View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13265_low_12 (Length: 330)

Name: NF13265_low_12
Description: NF13265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13265_low_12
NF13265_low_12
[»] chr5 (1 HSPs)
chr5 (1-312)||(38447715-38448014)
[»] chr4 (1 HSPs)
chr4 (197-249)||(53351104-53351156)
[»] chr1 (4 HSPs)
chr1 (189-249)||(38343190-38343250)
chr1 (189-249)||(38447383-38447443)
chr1 (1-45)||(38343019-38343063)
chr1 (1-45)||(38447212-38447256)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 38447715 - 38448014
Alignment:
Q  1 tgattgataggtgagtagattatgcattgctattctcttttatatatatctattagtgttgccaatattaataatagttttccgtnnnnnnnttatacgt 100  Q
    ||||||||||||||||||||||||||||||||| |            ||||||||||||||||||||||||||||||||||| ||       ||||||||    
T  38447715 tgattgataggtgagtagattatgcattgctatac------------atctattagtgttgccaatattaataatagttttctgtaaaaaaattatacgt 38447802  T
Q  101 taaatttacaattactttcgtcaatttcaggggtggcgctggaattttacctatacttttgactatgcaatctgatctgcctccactccctcagaatcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447803 taaatttacaattactttcgtcaatttcaggggtggcgctggaatttcacctatacttttgactatgcaatctgatctgcctccactccctcagaatcca 38447902  T
Q  201 ccacctatggagactcaatatcagatgtcaggatcaatttctccatatacagaagagaattgggaaggtttggatgctagtcgcgtgaattcctcgaaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38447903 ccacctatggagactcaatatcagatgtcaggatcaatttctccatatacagaagagaattgggaaggtttggatgctagtcgcgtgaattcctctaaga 38448002  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 53351156 - 53351104
Alignment:
Q  197 tccaccacctatggagactcaatatcagatgtcaggatcaatttctccatata 249  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  53351156 tccaccacctatggagactcaatatcagatgtcagaatcaagttctccatata 53351104  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 38343190 - 38343250
Alignment:
Q  189 cctcagaatccaccacctatggagactcaatatcagatgtcaggatcaatttctccatata 249  Q
    ||||||||||||| |||||||||||||||||||||| |||||  |||||||||||||||||    
T  38343190 cctcagaatccacaacctatggagactcaatatcagttgtcacaatcaatttctccatata 38343250  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 38447383 - 38447443
Alignment:
Q  189 cctcagaatccaccacctatggagactcaatatcagatgtcaggatcaatttctccatata 249  Q
    ||||||||||||| |||||||||||||||||||||| |||||  |||||||||||||||||    
T  38447383 cctcagaatccacaacctatggagactcaatatcagttgtcacaatcaatttctccatata 38447443  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38343019 - 38343063
Alignment:
Q  1 tgattgataggtgagtagattatgcattgctattctcttttatat 45  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||||    
T  38343019 tgattgataggtgagttgattatgcaatgccattctcttttatat 38343063  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38447212 - 38447256
Alignment:
Q  1 tgattgataggtgagtagattatgcattgctattctcttttatat 45  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||||    
T  38447212 tgattgataggtgagttgattatgcaatgccattctcttttatat 38447256  T

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