View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13265_low_2 (Length: 873)
Name: NF13265_low_2
Description: NF13265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13265_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 5901499 - 5901119
Alignment:
| Q |
1 |
tttttaaaaaataaatagagagtataaaacattaattaagatcaagtaaattaccatttatccaattctttggaggttggaaatgataagcagttctgta |
100 |
Q |
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| T |
5901499 |
tttttaaaaaataaatagagagtataaaacattaattaagatcaagtaaattaccatttatccaattctttggaggttggaaatgataagcagttctgta |
5901400 |
T |
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| Q |
101 |
aggttgtttgaaggaatcatcagaagataaactctgaaggtttctataaacatgatgagtagcttcaataggaagaataccattgacataaatgaaagta |
200 |
Q |
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| T |
5901399 |
aggttgtttgaaggaatcatcagaagataaactctgaaggtttctataaacatggtgagtagcttcaataggaagaataccattgacataaatgaaagta |
5901300 |
T |
|
| Q |
201 |
aagagaggcagtagccacatagtagagagtatagtcattgttgctagttatgttga--aatgtgaaggaatttacaattgatatgttatctatttatata |
298 |
Q |
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| T |
5901299 |
aagagaggcattagccacatagtagagagtatagtcattgttgctagttatgttgaataatgtgaaggaatttacaagtgatatgttatctacttatata |
5901200 |
T |
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| Q |
299 |
gagaatagaaaaatgttgtgctggctaatggctatggttgaaacttgtgagtaatagaaaaggatgtatattcagtcaagg |
379 |
Q |
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| T |
5901199 |
gagaatagaaaaatgttgtgctggctaatgcctatggttgaaacttgtgagtaatagaaaaggatgtatattcagtcaagg |
5901119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 439 - 834
Target Start/End: Complemental strand, 5901059 - 5900670
Alignment:
| Q |
439 |
agaagaactattgagtaaaaattcattgctcatgtgaggaagcaaccacgaaggtatgtggtcttaaatgtcaaaggaaagcnnnnnnnnnttttgtgga |
538 |
Q |
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| T |
5901059 |
agaagaactattgagtaaaaattcattgctcatgtgaggaagcaaccacgaaggtatgtggtcttaaatgtcaaaggaaagcaaaaaatttttttgtgga |
5900960 |
T |
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| Q |
539 |
tttgctattatttttatgatgggttgttctaatatgtaatttnnnnnnnnnnnnnnn----ttggaccctcgcaatatttactaaaataatggattttat |
634 |
Q |
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| T |
5900959 |
tttgctattatttttatgatgggtggttctaatatgtaatttaaaaaaaaataaaaaaaaattggaccctcgcaatatttactaaaataatggattttat |
5900860 |
T |
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| Q |
635 |
gaagnnnnnnnnnnnnnnnntggggtgttttactaaaaactgtgagagtccacaattgaactcnnnnnnngaggtccattagtacatattagaagcacaa |
734 |
Q |
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| T |
5900859 |
gaagaaaaaa----------tggggtgttttactaaaaactgtgagagtccacaattgaactctttttttgaggtccattagttcatattagaagcacaa |
5900770 |
T |
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| Q |
735 |
ttttattttatcaacatgtcttcgaaagagtctttaaatcannnnnnnaaaggaaagaaaatttagattaatgaagtcgttcattggttaaactttatac |
834 |
Q |
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| T |
5900769 |
ttttatttgatcaacatgtcctcgaaagagtctttaaatcatttttttaaaggaaagaaaatttagattattgaagtcgttcattggttaaactttatac |
5900670 |
T |
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