View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13265_low_3 (Length: 575)

Name: NF13265_low_3
Description: NF13265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13265_low_3
NF13265_low_3
[»] chr8 (17 HSPs)
chr8 (12-273)||(6518794-6519053)
chr8 (5-62)||(18806528-18806585)
chr8 (5-66)||(13628992-13629053)
chr8 (5-66)||(13729404-13729465)
chr8 (12-63)||(4797191-4797242)
chr8 (16-66)||(14426076-14426126)
chr8 (12-66)||(31226425-31226479)
chr8 (5-66)||(1155092-1155153)
chr8 (20-65)||(9135123-9135168)
chr8 (13-62)||(38937908-38937957)
chr8 (15-66)||(23982366-23982417)
chr8 (12-50)||(3628342-3628380)
chr8 (20-66)||(35468454-35468500)
chr8 (18-63)||(4326033-4326078)
chr8 (15-64)||(14728875-14728924)
chr8 (5-65)||(9604458-9604518)
chr8 (12-60)||(31128518-31128566)
[»] chr1 (14 HSPs)
chr1 (12-66)||(38902078-38902132)
chr1 (12-66)||(32451714-32451768)
chr1 (5-66)||(43822883-43822944)
chr1 (15-66)||(47783609-47783660)
chr1 (12-63)||(51504491-51504542)
chr1 (14-63)||(52353747-52353796)
chr1 (15-63)||(27544489-27544537)
chr1 (15-62)||(26991705-26991751)
chr1 (15-50)||(50011435-50011470)
chr1 (16-66)||(36167009-36167059)
chr1 (5-66)||(13984145-13984206)
chr1 (19-52)||(39096702-39096735)
chr1 (15-51)||(10472398-10472434)
chr1 (14-66)||(25813852-25813904)
[»] chr3 (10 HSPs)
chr3 (5-66)||(55222598-55222659)
chr3 (11-63)||(36619272-36619324)
chr3 (12-66)||(35539704-35539758)
chr3 (12-60)||(40242146-40242194)
chr3 (12-63)||(52744678-52744729)
chr3 (12-63)||(13755111-13755162)
chr3 (12-63)||(13768512-13768563)
chr3 (16-63)||(26085176-26085223)
chr3 (12-55)||(46006045-46006088)
chr3 (9-63)||(44110942-44110996)
[»] chr6 (4 HSPs)
chr6 (12-66)||(32658381-32658435)
chr6 (15-63)||(27753038-27753086)
chr6 (19-62)||(5002328-5002371)
chr6 (12-66)||(33755854-33755908)
[»] chr5 (7 HSPs)
chr5 (13-66)||(41520817-41520870)
chr5 (12-63)||(22579788-22579839)
chr5 (15-62)||(8571950-8571997)
chr5 (6-61)||(26675440-26675495)
chr5 (6-61)||(26947048-26947103)
chr5 (5-63)||(12593233-12593291)
chr5 (5-62)||(1309722-1309779)
[»] chr4 (14 HSPs)
chr4 (5-62)||(35144495-35144552)
chr4 (12-63)||(10180572-10180623)
chr4 (12-66)||(52199917-52199971)
chr4 (5-62)||(23607461-23607518)
chr4 (12-60)||(45833962-45834010)
chr4 (15-66)||(39055279-39055330)
chr4 (12-66)||(2396413-2396467)
chr4 (5-63)||(35308943-35309001)
chr4 (13-62)||(8489456-8489505)
chr4 (5-62)||(42426850-42426907)
chr4 (12-55)||(12447533-12447576)
chr4 (5-63)||(49211135-49211194)
chr4 (17-63)||(28897710-28897756)
chr4 (12-64)||(24030740-24030792)
[»] chr2 (15 HSPs)
chr2 (5-62)||(6710831-6710888)
chr2 (5-66)||(9583249-9583310)
chr2 (5-66)||(37347792-37347853)
chr2 (15-62)||(16117871-16117918)
chr2 (12-63)||(11922058-11922109)
chr2 (12-63)||(31050067-31050118)
chr2 (12-63)||(15269311-15269362)
chr2 (12-63)||(26312585-26312636)
chr2 (12-63)||(34375162-34375213)
chr2 (12-62)||(3668953-3669003)
chr2 (5-43)||(4755284-4755322)
chr2 (5-43)||(30465369-30465407)
chr2 (14-63)||(14332048-14332097)
chr2 (17-66)||(14772881-14772930)
chr2 (15-63)||(21848156-21848204)
[»] scaffold0036 (1 HSPs)
scaffold0036 (12-63)||(63665-63716)
[»] chr7 (8 HSPs)
chr7 (5-62)||(5513805-5513863)
chr7 (12-62)||(30859686-30859736)
chr7 (5-66)||(36657844-36657905)
chr7 (13-63)||(36656567-36656617)
chr7 (12-62)||(46747992-46748042)
chr7 (16-65)||(17503171-17503220)
chr7 (16-65)||(17549994-17550043)
chr7 (17-66)||(44441711-44441760)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 6519053 - 6518794
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaacnnnnnnntaagtgtatccattgttgatgctcttaaaagagaacat 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||       | |||||||||||||| |||||||||||| ||||||||    
T  6519053 tactattaaaaaattataaataagtgatatgtgcacgtgggacccatttaagaacaaaaaa-tgagtgtatccattgtagatgctcttaaa-gagaacat 6518956  T
Q  112 ggtgcatatatatggggagagatagatgaagggggaagactttgtgcataaatatgccaatgttatcatttttgtttcaaataaagttgggcagttaatt 211  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  6518955 ggtgcataaatatggggagagatagatgaagggggaagactttgtgcataattatgccaatgttctcatttttgtttcaaataaagtagggcaattaatt 6518856  T
Q  212 taatctaagattacttttcattgttccatcgatatgggacttggttgagctctcccctataa 273  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6518855 taatctaagagtacttttcattgttccatcgatatgggacttgattgagctctcccctataa 6518794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 18806585 - 18806528
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  18806585 tagatactactattaaaaaattataaataagtgatgtgtacacgtgaaacccatttaa 18806528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 13629053 - 13628992
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||| ||||||||||||||||||||| | |||| ||| || |||||||||||||||||||    
T  13629053 tagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccatttaagaac 13628992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 13729465 - 13729404
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||| ||||||||||||||||||||| | |||| ||| || |||||||||||||||||||    
T  13729465 tagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccatttaagaac 13729404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 4797242 - 4797191
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| ||||||| || ||||||||| |||||||||    
T  4797242 tactattaaaaaattataaattagtgatacgtacacgtgagatccatttaag 4797191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 14426126 - 14426076
Alignment:
Q  16 attaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||||||||||||| ||||||| ||| |||||| |||||||||||||||    
T  14426126 attaaaaaattataaagaagtgatgtgtacacgtgtgacccatttaagaac 14426076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 31226479 - 31226425
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||||||| |||||| ||| || |||| ||||||||||||||    
T  31226479 tactattaaaaaattataaatgagtgatgtgtacatgtgacacccatttaagaac 31226425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 1155153 - 1155092
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||| ||||||||||||||||||||| |||||| ||| |||| | || ||||||||||||    
T  1155153 tagatactactattaaaaaattataaatgagtgatgtgtacacgcgggatccatttaagaac 1155092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 9135123 - 9135168
Alignment:
Q  20 aaaaattataaataagtgatatgtgcacgtgagacccatttaagaa 65  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||||    
T  9135123 aaaaattgtaaatgagtgatatgtacacgtgagacccatttaagaa 9135168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 38937908 - 38937957
Alignment:
Q  13 actattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    ||||||||||||||||||||||||||||||| ||| | ||| ||||||||    
T  38937908 actattaaaaaattataaataagtgatatgtacacataagatccatttaa 38937957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 23982366 - 23982417
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||||||||||||||| |||||| ||| ||||||| | ||||||||||||    
T  23982366 tattaaaaaattataaatgagtgatgtgtacacgtgaaaaccatttaagaac 23982417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 3628342 - 3628380
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtg 50  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  3628342 tactattaaaaaattataaataaatgatatgtacacgtg 3628380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 35468454 - 35468500
Alignment:
Q  20 aaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  35468454 aaaaattataaatgagtgatgtgtacgcgtgagacccatttaagaac 35468500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 4326033 - 4326078
Alignment:
Q  18 taaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||| |||||| ||| ||| |||||||||||||||    
T  4326033 taaaaaattataaatgagtgatgtgtacacttgagacccatttaag 4326078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 14728924 - 14728875
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaaga 64  Q
    |||||||||||||| || ||||||| ||| || |||||||||||||||||    
T  14728924 tattaaaaaattattaaaaagtgatgtgtccatgtgagacccatttaaga 14728875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 9604518 - 9604458
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaa 65  Q
    |||||| || |||||||||||||||||| ||||||  ||  |||||||||| |||||||||    
T  9604518 tagatactattattaaaaaattataaattagtgatgcgtagacgtgagacctatttaagaa 9604458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 31128566 - 31128518
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccattt 60  Q
    ||||||||||||||||||||| |||||| |||   ||||||||||||||    
T  31128566 tactattaaaaaattataaatgagtgatgtgtatgcgtgagacccattt 31128518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 38902078 - 38902132
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  38902078 tactattaaaaaattataaatgagtgatatgtacacgtgagacccatttaagaac 38902132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 32451768 - 32451714
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||||||| |||||| |||  |||||||||||||||||||||    
T  32451768 tactattaaaaaattataaattagtgatgtgtaaacgtgagacccatttaagaac 32451714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 43822883 - 43822944
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||| ||||||||||||||||||||| |||||| ||| | |||| |||||||||||||||    
T  43822883 tagatactactattaaaaaattataaatgagtgatgtgtacgcgtgggacccatttaagaac 43822944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 47783660 - 47783609
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||| || |||| ||| ||||||||||||||||||||||    
T  47783660 tattaaaaaattataaacaaatgatgtgtacacgtgagacccatttaagaac 47783609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 51504542 - 51504491
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| |||||| | | |||||||||||||||||||    
T  51504542 tactattaaaaaattataaatgagtgatgtatacacgtgagacccatttaag 51504491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 52353796 - 52353747
Alignment:
Q  14 ctattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||| |||||| ||| |||||| ||||||||||||    
T  52353796 ctattaaaaaattataaattagtgatgtgtacacgtgggacccatttaag 52353747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 27544489 - 27544537
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||||||||||||||| |||||| ||| ||| |||||||||||||||    
T  27544489 tattaaaaaattataaatgagtgatgtgtacacatgagacccatttaag 27544537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 26991751 - 26991705
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    ||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  26991751 tattaaaaaattataaataagtgatatgt-cacgtgaggtccatttaa 26991705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 50011470 - 50011435
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtg 50  Q
    ||||||||||||||||||||||||||||| ||||||    
T  50011470 tattaaaaaattataaataagtgatatgtacacgtg 50011435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 36167009 - 36167059
Alignment:
Q  16 attaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||||| |||| ||| || ||| |||||||||||||||    
T  36167009 attaaaaaattataaataaatgatgtgtacatgtgggacccatttaagaac 36167059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 13984145 - 13984206
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||| |||||||||||||||||||||  ||||| |||   |||| |||||||||||||||    
T  13984145 tagatactactattaaaaaattataaatgtgtgatgtgtatgcgtgggacccatttaagaac 13984206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 39096702 - 39096735
Alignment:
Q  19 aaaaaattataaataagtgatatgtgcacgtgag 52  Q
    ||||||||||||||||||||||||| ||||||||    
T  39096702 aaaaaattataaataagtgatatgtacacgtgag 39096735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 10472434 - 10472398
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtga 51  Q
    |||||||||||||||||||| |||||||| |||||||    
T  10472434 tattaaaaaattataaataaatgatatgtacacgtga 10472398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 25813852 - 25813904
Alignment:
Q  14 ctattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||||| |||||| ||| | |||| |||| ||||||||||    
T  25813852 ctattaaaaaattataaatgagtgatgtgtacgcgtgggacctatttaagaac 25813904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 55222598 - 55222659
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||    
T  55222598 tagatactactattaaaaaattataaatgactgatatgtacacgtgagacccatttaagaac 55222659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 36619272 - 36619324
Alignment:
Q  11 atactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  36619272 atactattaaaaaattataaatcagtgatgtgtacacgtgagacccatttaag 36619324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 35539704 - 35539758
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||    
T  35539704 tactattaaaaaattataaataaatgatgtgtacacgtgagactcatttaagaac 35539758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 40242194 - 40242146
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccattt 60  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||    
T  40242194 tactattaaaaaattataaataagtgatatatacacgtgagacacattt 40242146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 52744729 - 52744678
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||||||| || ||| |||||||||| ||||||||    
T  52744729 tactattaaaaaattataaataagtaatgtgtacacgtgagactcatttaag 52744678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 13755162 - 13755111
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||||| ||||||    
T  13755162 tactattaaaaaattataaatgagtgatgtgtacacgtgggacccgtttaag 13755111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 13768563 - 13768512
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||||| ||||||    
T  13768563 tactattaaaaaattataaatgagtgatgtgtacacgtgggacccgtttaag 13768512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 26085176 - 26085223
Alignment:
Q  16 attaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||| | |||| ||| |||||||||||||||||||    
T  26085176 attaaaaaattataaatgaatgatgtgtacacgtgagacccatttaag 26085223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 46006088 - 46006045
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacc 55  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||    
T  46006088 tactattaaaaaattataaatgagtgatgtgtacacgtgagacc 46006045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 44110942 - 44110996
Alignment:
Q  9 taatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||||||||||||||||||||| | | || ||| |||||| ||||||||||||    
T  44110942 taatactattaaaaaattataaatgaattatgtgtacacgtgtgacccatttaag 44110996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 32658435 - 32658381
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  32658435 tactattaaaaaattataaatgagtgatgtgtccacgtgagacccatttaagaac 32658381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 27753086 - 27753038
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||||||||||| || |||||| | |||||||    
T  27753086 tattaaaaaattataaataagtgatatgtacatgtgagatctatttaag 27753038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 5002371 - 5002328
Alignment:
Q  19 aaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||    
T  5002371 aaaaaattataaataagtgatgtgtacacgtaagacccatttaa 5002328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 33755854 - 33755908
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||||||||||| |||||||||| || | | ||| ||||||||||||||||||    
T  33755854 tactattaaaaaataataaataagtaatgtatacacttgagacccatttaagaac 33755908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 41520870 - 41520817
Alignment:
Q  13 actattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  41520870 actattaaaaaattataaataagtgatgtgtacacgtgaaacccatttaagaac 41520817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 22579788 - 22579839
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| ||||||||||| ||||||||  ||||||||    
T  22579788 tactattaaaaaattataaatgagtgatatgtgtacgtgagattcatttaag 22579839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 8571997 - 8571950
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||||    
T  8571997 tattaaaaaattataaataattcatgtgtacacgtgagacccatttaa 8571950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 26675495 - 26675440
Alignment:
Q  6 agataatactattaaaaaattataaataagtgatatgtgcacgtgagacccattta 61  Q
    ||||| ||||||||||||||||||||| |||||| ||| ||  |||||||||||||    
T  26675495 agatactactattaaaaaattataaatgagtgatgtgtacatatgagacccattta 26675440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 26947103 - 26947048
Alignment:
Q  6 agataatactattaaaaaattataaataagtgatatgtgcacgtgagacccattta 61  Q
    ||||| ||||||||||||||||||||| |||||| ||| ||  |||||||||||||    
T  26947103 agatactactattaaaaaattataaatgagtgatgtgtacatatgagacccattta 26947048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 12593233 - 12593291
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||| |||||||||||| |||||||| |||||| ||| |||||| |||| |||||||    
T  12593233 tagatactactattaaaaagttataaatgagtgatgtgtacacgtgtgaccaatttaag 12593291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 1309779 - 1309722
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||| || |||||||||||||||||||| |||||| | |||||| ||| |||||||    
T  1309779 tagatactattattaaaaaattataaataaatgatatatacacgtgggactcatttaa 1309722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 35144495 - 35144552
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  35144495 tagatactactactaaaaaattataaataattgatatgtacacgtgagacccatttaa 35144552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 10180623 - 10180572
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  10180623 tactattaaaaaattataaatgagtgatatgtacacgtgagatccatttaag 10180572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 52199917 - 52199971
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||||||||||||||| |||||  |||||||||| |||||||||||||||    
T  52199917 tactattaaaaaattataaatgagtgacgtgtgcacgtgggacccatttaagaac 52199971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 23607461 - 23607518
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||| ||||||||||||||||||||||||| || |||  |||||||||||||||||    
T  23607461 tagatactactattaaaaaattataaataagtaatgtgtatacgtgagacccatttaa 23607518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 45833962 - 45834010
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccattt 60  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  45833962 tactattaaaaaattataaatgagtgatgtgtacacgtgagacccattt 45834010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 39055279 - 39055330
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  39055279 tattaaaaaattataaatgagtgatgtgtacgcgtgagacccatttaagaac 39055330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 2396413 - 2396467
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    ||||||||| |||||||||||||||||| ||| |||||| ||| |||||||||||    
T  2396413 tactattaacaaattataaataagtgatgtgtacacgtgggactcatttaagaac 2396467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 35309001 - 35308943
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||| |||||||||||||||||||||||||||  ||| | |||||||| ||||||||    
T  35309001 tagatattactattaaaaaattataaataagtgacgtgtacgcgtgagactcatttaag 35308943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 8489505 - 8489456
Alignment:
Q  13 actattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    ||||||||||||||||||||||||||| | | ||||| ||||||||||||    
T  8489505 actattaaaaaattataaataagtgatgtatacacgtaagacccatttaa 8489456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 42426907 - 42426850
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||| ||||||||||||||||||||||||| |  ||| ||||||||| ||||||||    
T  42426907 tagatactactattaaaaaattataaataagtaacgtgtacacgtgagatccatttaa 42426850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 12447533 - 12447576
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacc 55  Q
    |||||||||||||||||||||||||||| ||| | |||||||||    
T  12447533 tactattaaaaaattataaataagtgatttgtactcgtgagacc 12447576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 49211135 - 49211194
Alignment:
Q  5 tagataatactattaaaa-aattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||| ||||||||||| |||||||||||| |||||||| ||||||| ||| |||||||    
T  49211135 tagatactactattaaaaaaattataaataaatgatatgtacacgtgaaacctatttaag 49211194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 28897710 - 28897756
Alignment:
Q  17 ttaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||||||||||||| |||||||| | |||||||||| ||||||||    
T  28897710 ttaaaaaattataaatgagtgatatatacacgtgagactcatttaag 28897756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 24030740 - 24030792
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaaga 64  Q
    |||| ||||||||||||||| ||||||||||| |||||||  | |||||||||    
T  24030740 tacttttaaaaaattataaacaagtgatatgtacacgtgatgctcatttaaga 24030792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 6710888 - 6710831
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  6710888 tagatactactattaaaaaattataaatgagtgatctgtacacgtgagacccatttaa 6710831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 9583249 - 9583310
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||| ||||||||||||||||||||||||||||  || |||||||||| |||||||||||    
T  9583249 tagatactactattaaaaaattataaataagtgatgcgtacacgtgagactcatttaagaac 9583310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 37347853 - 37347792
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||| ||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||    
T  37347853 tagatattactattaaaaaattataaataaatgatgtgtacacgtgagatccatttaagaac 37347792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 16117918 - 16117871
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  16117918 tattaaaaaattataaatgagtgatatgtacacgtgagacccatttaa 16117871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 11922058 - 11922109
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  11922058 tactattaaaaaattataaatgagtaatgtgtacacgtgagacccatttaag 11922109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 31050118 - 31050067
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||||||||||||||||||||||||| ||| || ||||||| ||||||||    
T  31050118 tactattaaaaaattataaataagtgatgtgtacatgtgagactcatttaag 31050067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 15269311 - 15269362
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| ||| || ||| || ||||||||||||||||    
T  15269311 tactattaaaaaattataaatgagtaatgtgtacatgtgagacccatttaag 15269362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 26312585 - 26312636
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||||| ||||||    
T  26312585 tactattaaaaaattataaatgagtgatgtgtacacgtgtgacccgtttaag 26312636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 34375162 - 34375213
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||||||||||||||||||||||||| ||| || |||||| | |||||||    
T  34375162 tactattaaaaaattataaataagtgatgtgtacatgtgagatctatttaag 34375213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 3668953 - 3669003
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    ||||||||||||||||||||| ||| |||| | |||||||||| |||||||    
T  3668953 tactattaaaaaattataaattagtaatatatacacgtgagactcatttaa 3669003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 4755322 - 4755284
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgt 43  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  4755322 tagataataatattaaaaaattataaatgagtgatatgt 4755284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 30465369 - 30465407
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgt 43  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  30465369 tagatactactattaaaaaattataaataagttatatgt 30465407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 14332097 - 14332048
Alignment:
Q  14 ctattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||| |||||||||||||| |||||| ||| ||||||||| |||||||||    
T  14332097 ctatcaaaaaattataaatgagtgatgtgtacacgtgagatccatttaag 14332048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 14772930 - 14772881
Alignment:
Q  17 ttaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||||||||||||| | |||| ||| | ||||||||||||||||||||    
T  14772930 ttaaaaaattataaatgaatgatgtgtacgcgtgagacccatttaagaac 14772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 21848204 - 21848156
Alignment:
Q  15 tattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||||||| ||| |||||| || | |||||||    
T  21848204 tattaaaaaattataaataagtgatgtgtacacgtgggatctatttaag 21848156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 63665 - 63716
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    
T  63665 tactattaaaaaattataaattagtgacatgtacacgtgagacctatttaag 63716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 5513863 - 5513805
Alignment:
Q  5 tagataatactattaaaaaa-ttataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||| ||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||    
T  5513863 tagatattactattaaaaaaattataaataagtgatgtgtacacgtgagatccatttaa 5513805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 30859686 - 30859736
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    ||||||||||||||||||||| |||||||| | ||||| ||||||||||||    
T  30859686 tactattaaaaaattataaatgagtgatatatacacgtaagacccatttaa 30859736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 36657905 - 36657844
Alignment:
Q  5 tagataatactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||| ||||||||||||||||||||| ||  || ||| ||| ||||||||||||||||||    
T  36657905 tagatagtactattaaaaaattataaatgagcaatgtgtacacatgagacccatttaagaac 36657844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 36656617 - 36656567
Alignment:
Q  13 actattaaaaaattataaataagtgatatgtgcacgtgagacccatttaag 63  Q
    |||||||||||||||||||| |||||||| |  | ||||||||||||||||    
T  36656617 actattaaaaaattataaatgagtgatatatataagtgagacccatttaag 36656567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 46748042 - 46747992
Alignment:
Q  12 tactattaaaaaattataaataagtgatatgtgcacgtgagacccatttaa 62  Q
    |||||||||||||||||||||||||||| |||  | ||| |||||||||||    
T  46748042 tactattaaaaaattataaataagtgatgtgtataagtgggacccatttaa 46747992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 17503220 - 17503171
Alignment:
Q  16 attaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaa 65  Q
    |||||||||||||||||||||||| ||| |||||| |  |||||||||||    
T  17503220 attaaaaaattataaataagtgatgtgttcacgtggggtccatttaagaa 17503171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 17549994 - 17550043
Alignment:
Q  16 attaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaa 65  Q
    |||||||||||||||||||||||| ||| |||||| |  |||||||||||    
T  17549994 attaaaaaattataaataagtgatgtgttcacgtggggtccatttaagaa 17550043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 44441711 - 44441760
Alignment:
Q  17 ttaaaaaattataaataagtgatatgtgcacgtgagacccatttaagaac 66  Q
    |||||||||||||||| |||||| ||| ||  ||||||||||||||||||    
T  44441711 ttaaaaaattataaatgagtgatgtgtacatttgagacccatttaagaac 44441760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University