View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13265_low_6 (Length: 470)

Name: NF13265_low_6
Description: NF13265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13265_low_6
NF13265_low_6
[»] chr2 (12 HSPs)
chr2 (267-455)||(2474509-2474697)
chr2 (10-162)||(2474238-2474390)
chr2 (15-162)||(2469972-2470119)
chr2 (10-124)||(2458018-2458132)
chr2 (10-129)||(3063281-3063403)
chr2 (10-140)||(2462594-2462727)
chr2 (10-117)||(2466642-2466752)
chr2 (40-109)||(2471021-2471090)
chr2 (159-207)||(2474456-2474504)
chr2 (10-100)||(2486512-2486602)
chr2 (41-100)||(2478858-2478917)
chr2 (41-100)||(2483362-2483421)
[»] chr4 (1 HSPs)
chr4 (10-129)||(18015917-18016039)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 267 - 455
Target Start/End: Original strand, 2474509 - 2474697
Alignment:
Q  267 tttaactaactcacaccatccacaaatattttttcggacaaaatagtatgaaacgtcggtattcttattaatataaattgtttttgtnnnnnnnnnnnnt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  2474509 tttaactaactcacaccatccacaaatattttttcggacaaaatagtatgaaacgtcggtattcttattaatataaattgtttttgtaaatagaaaaaat 2474608  T
Q  367 aaatacactcagcagtgttgttcagtgcaacagctgaacgcccttagttatacgactgagaattttaatatttaacttccctacaaact 455  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474609 aaatatactcagcagtgttgttcggtgcaacagctgaacgcccttagttatacgactgagaattttaatatttaacttccctacaaact 2474697  T

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Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 2474238 - 2474390
Alignment:
Q  10 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccacc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2474238 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccccc 2474337  T
Q  110 aggcaactatattggcgaaagaccatactaatttattcatatttgtttgtatt 162  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2474338 tggcaactatattggcgaaagaccatactaattgattcatatttgtttgtatt 2474390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 2469972 - 2470119
Alignment:
Q  15 actcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccaccaggca 114  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  2469972 actcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccaccaggca 2470071  T
Q  115 actatattggcgaaagaccatactaatttattcatatttgtttgtatt 162  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||    
T  2470072 actatattggcgaaagaccatactaagtgattcatatttatttgtatt 2470119  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 2458018 - 2458132
Alignment:
Q  10 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccacc 109  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||||| | |||| |||||||||| |||||||||| |||||||||||| |||||    
T  2458018 attacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacc 2458117  T
Q  110 aggcaactatattgg 124  Q
    |||||||||| ||||    
T  2458118 aggcaactatgttgg 2458132  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 3063403 - 3063281
Alignment:
Q  10 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgaccc 106  Q
    ||||||||||||| |||||||||||| || ||||| |||||||||||||||||| |||||   ||||| |||||||||||||||| ||||||||||||||    
T  3063403 attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc 3063304  T
Q  107 accaggcaactatattggcgaaa 129  Q
    ||||||||||||| |||| ||||    
T  3063303 accaggcaactatgttggtgaaa 3063281  T

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Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 2462594 - 2462727
Alignment:
Q  10 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatg---gaggaacattcattacttgcaattacgaccc 106  Q
    ||||||| ||||| |||||||||||| || ||||| |||||||||||||||||| ||||||||||    |||||||||||||||| ||||||||||||||    
T  2462594 attatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc 2462693  T
Q  107 accaggcaactatattggcgaaagaccatactaa 140  Q
    ||||||||||||| |||| ||||  |||||||||    
T  2462694 accaggcaactatgttggtgaaaagccatactaa 2462727  T

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Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 2466642 - 2466752
Alignment:
Q  10 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgaccc 106  Q
    ||||||| ||||| |||||||||||| || ||||| |||||||||||||||||| |||||   ||||| |||||||||||||||| ||||||||||||||    
T  2466642 attatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc 2466741  T
Q  107 accaggcaact 117  Q
    |||||||||||    
T  2466742 accaggcaact 2466752  T

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Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 2471021 - 2471090
Alignment:
Q  40 aacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccacc 109  Q
    ||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  2471021 aacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc 2471090  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 2474456 - 2474504
Alignment:
Q  159 tatttttcccctactcatatataatttgtggtatttaatttaaagtgaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474456 tatttttcccctactcatatataatttgtggtatttaatttaaagtgaa 2474504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 2486512 - 2486602
Alignment:
Q  10 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 100  Q
    ||||||||||||| ||||||  |||  ||  |||| ||||||||| ||||||||||||||||||||| ||  ||||  |||||||||||||    
T  2486512 attatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttacttgcaatta 2486602  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 2478858 - 2478917
Alignment:
Q  41 acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 100  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||  ||||||| |||||    
T  2478858 acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta 2478917  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 2483362 - 2483421
Alignment:
Q  41 acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 100  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||  ||||||| |||||    
T  2483362 acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta 2483421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 18015917 - 18016039
Alignment:
Q  10 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgaccc 106  Q
    ||||||||||||| |||||||||||| || ||||| |||||||||||||||||| |||||   ||||| |||||||||||||||| ||||||||||||||    
T  18015917 attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc 18016016  T
Q  107 accaggcaactatattggcgaaa 129  Q
    ||||||||||||| |||| ||||    
T  18016017 accaggcaactatgttggtgaaa 18016039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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