View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13265_low_7 (Length: 453)

Name: NF13265_low_7
Description: NF13265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13265_low_7
NF13265_low_7
[»] scaffold0224 (3 HSPs)
scaffold0224 (168-336)||(12614-12791)
scaffold0224 (351-444)||(12822-12915)
scaffold0224 (18-76)||(11842-11900)
[»] chr1 (3 HSPs)
chr1 (168-336)||(42933980-42934157)
chr1 (351-444)||(42933856-42933949)
chr1 (18-76)||(42934871-42934929)
[»] chr4 (1 HSPs)
chr4 (18-76)||(21263196-21263254)
[»] chr2 (1 HSPs)
chr2 (28-76)||(1718001-1718049)


Alignment Details
Target: scaffold0224 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 168 - 336
Target Start/End: Original strand, 12614 - 12791
Alignment:
Q  168 tcttttctcgtatttcaacttcaattcttttcacttcaactagttcaattctcattctctcnnnnnnnn---------ctagttcaattctcatggaaga 258  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||    
T  12614 tcttttctagtatttcaacttcaattcttttcacttcaactagttcaattctcattctctaaaaaaaaaaaaaaaaaactagttcaattctcatggaaga 12713  T
Q  259 taccctaaacaataggctgctcaaacaatatttttcactgttgggtaattgcattttgagagaggctataaacaagga 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12714 taccctaaacaataggctgctcaaacaatatttttcactgttgggtgattgcattttgagagaggctataaacaagga 12791  T

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Target: scaffold0224; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 351 - 444
Target Start/End: Original strand, 12822 - 12915
Alignment:
Q  351 ttgggtttctctaataaacatttatgtaagttgtagcaatcacacttatgtgcgctagatatttgatgaaatacctcaacaagatattgtctct 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12822 ttgggtttctctaataaacatttatgtaagttgtagcaatcacacttatgtgcgctggatatttgatgaaatacctcaacaagatattgtctct 12915  T

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Target: scaffold0224; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 11842 - 11900
Alignment:
Q  18 aagtgcagtgtctagagttatttgggaatatccaagttgaaaaagccatttttaatcct 76  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  11842 aagtgcagtgtctagagttatttgagaatatccaagttgaaaaggccatttttaatcct 11900  T

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Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 168 - 336
Target Start/End: Complemental strand, 42934157 - 42933980
Alignment:
Q  168 tcttttctcgtatttcaacttcaattcttttcacttcaactagttcaattctcattctctcnnnnnnnn---------ctagttcaattctcatggaaga 258  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||    
T  42934157 tcttttctagtatttcaacttcaattcttttcacttcaactagttcaattctcattctctaaaaaaaaaaaaaaaaaactagttcaattctcatggaaga 42934058  T
Q  259 taccctaaacaataggctgctcaaacaatatttttcactgttgggtaattgcattttgagagaggctataaacaagga 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42934057 taccctaaacaataggctgctcaaacaatatttttcactgttgggtgattgcattttgagagaggctataaacaagga 42933980  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 351 - 444
Target Start/End: Complemental strand, 42933949 - 42933856
Alignment:
Q  351 ttgggtttctctaataaacatttatgtaagttgtagcaatcacacttatgtgcgctagatatttgatgaaatacctcaacaagatattgtctct 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42933949 ttgggtttctctaataaacatttatgtaagttgtagcaatcacacttatgtgcgctggatatttgatgaaatacctcaacaagatattgtctct 42933856  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 42934929 - 42934871
Alignment:
Q  18 aagtgcagtgtctagagttatttgggaatatccaagttgaaaaagccatttttaatcct 76  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  42934929 aagtgcagtgtctagagttatttgagaatatccaagttgaaaaggccatttttaatcct 42934871  T

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Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 21263196 - 21263254
Alignment:
Q  18 aagtgcagtgtctagagttatttgggaatatccaagttgaaaaagccatttttaatcct 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21263196 aagtgcagtgtctagagttatttgggaatatccaagttgaaaaagccatttttaatcct 21263254  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 1718049 - 1718001
Alignment:
Q  28 tctagagttatttgggaatatccaagttgaaaaagccatttttaatcct 76  Q
    |||| |||||||||||||| |||||||| ||||| ||||||||||||||    
T  1718049 tctaaagttatttgggaatctccaagttaaaaaaaccatttttaatcct 1718001  T

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