View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13265_low_9 (Length: 427)
Name: NF13265_low_9
Description: NF13265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13265_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 188 - 410
Target Start/End: Complemental strand, 37976152 - 37975930
Alignment:
| Q |
188 |
agccaagggactaaaaatagctctactatacacaaaattgagcacttctagcatatgattttgaaattggttgattttggtac----caagtattattaa |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37976152 |
agccaagggactaaaaatagctctactatacacaaaattgagcacttctagcatatgattttgaaattggttgattttggtactaattaagtattattaa |
37976053 |
T |
|
| Q |
284 |
caccaataaaattaaaccattgactgattgtagatcaaaactttgcatttatattatttatttagagattctaggttccaattccactcatcacatgcat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |
|
|
| T |
37976052 |
caccaataaaattaaaccattgactgattgtagatcaaaactttgcatttatattatttatttagagattctaggttccacttacactcatca----cat |
37975957 |
T |
|
| Q |
384 |
gcagcttggtgatataaaataaaaaag |
410 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37975956 |
gcagcttggtgatataaaataaaaaag |
37975930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 37976349 - 37976199
Alignment:
| Q |
12 |
aatactcaacactttgtgctatatgtcattattcaatgttcacatcaatgctcctttggccataatgccagagacactccaatagctttagttctgtcat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37976349 |
aatactcaacactttgtgctatatgtcattattcaatgttcacatcaatgctcctttggccataatgccagagacactccaatagctttagttctgtcat |
37976250 |
T |
|
| Q |
112 |
gcagtagtatactgacatttatgtattctatataagtgttggaaatggttt |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37976249 |
gcagtagtatactgacatttatgtattctatataagtgttggaaatggttt |
37976199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University