View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13266_high_9 (Length: 248)
Name: NF13266_high_9
Description: NF13266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13266_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 27998812 - 27998608
Alignment:
| Q |
26 |
catcgttttccaaaatggctgatataatatagaccacatgtataatttgtttaaagaacctnnnnnnnnnnnnnttgtttataattgatacggccggaag |
125 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
27998812 |
catcgtttcccaaaatggctgatataatatagaccacatgcataatttgtttaatgaacctaaaaagtaaaaaattgtttataattgatgcggccggaag |
27998713 |
T |
|
| Q |
126 |
aagtattagattatctagtatttgttcctcattgtctcttgttttttgaccttt-tgctgtgcaacagccataactaaagttgtcataattttttatttg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27998712 |
aagtattagattatctagtatttgttcctcattgtctcttgttttttgacctttgtgctgtgcaacagccataactaaagttgtcataattttttatttg |
27998613 |
T |
|
| Q |
225 |
gagtt |
229 |
Q |
| |
|
||||| |
|
|
| T |
27998612 |
gagtt |
27998608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 28056114 - 28055910
Alignment:
| Q |
26 |
catcgttttccaaaatggctgatataatatagaccacatgtataatttgtttaaagaacctnnnnnnnnnnnnnttgtttataattgatacggccggaag |
125 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
28056114 |
catcgtttcccaaaatggctgatataatatagaccacatgcataatttgtttaatgaacctaaaaagtaaaaaattgtttataattgatgcggccggaag |
28056015 |
T |
|
| Q |
126 |
aagtattagattatctagtatttgttcctcattgtctcttgttttttgaccttt-tgctgtgcaacagccataactaaagttgtcataattttttatttg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28056014 |
aagtattagattatctagtatttgttcctcattgtctcttgttttttgacctttgtgctgtgcaacagccataactaaagttgtcataattttttatttg |
28055915 |
T |
|
| Q |
225 |
gagtt |
229 |
Q |
| |
|
||||| |
|
|
| T |
28055914 |
gagtt |
28055910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University