View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13266_low_3 (Length: 446)
Name: NF13266_low_3
Description: NF13266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13266_low_3 |
 | |
|
| [»] chr3 (15 HSPs) |
| |
|
| [»] scaffold0201 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 23478145 - 23477718
Alignment:
| Q |
19 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
23478145 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttctatcttttctctccctgatcttagatatct |
23478046 |
T |
|
| Q |
119 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23478045 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaa |
23477946 |
T |
|
| Q |
219 |
ttttcagtgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgc |
318 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23477945 |
ttttcagtgacatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgc |
23477846 |
T |
|
| Q |
319 |
ttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23477845 |
ttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcac |
23477746 |
T |
|
| Q |
419 |
agaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
23477745 |
agaaatgaatgcattaagtctgtggtcc |
23477718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 23498594 - 23498167
Alignment:
| Q |
19 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23498594 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatct |
23498495 |
T |
|
| Q |
119 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
23498494 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctttgtgaactcttactcgatggttgttcttctctcacagaa |
23498395 |
T |
|
| Q |
219 |
ttttcagtgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgc |
318 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
23498394 |
ttctcagtgacatcggatgaaatgacagagttgaccttagatggcactgctatacgtgaattgtcttcatcgatttggcgtaacagaaaacttacttctc |
23498295 |
T |
|
| Q |
319 |
ttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcac |
418 |
Q |
| |
|
|| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
23498294 |
tttccctaaccgagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttatagaactaaacctttcacggtgcac |
23498195 |
T |
|
| Q |
419 |
agaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
23498194 |
agaaatcaatgcattaagtctgtggtcc |
23498167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 23446845 - 23446419
Alignment:
| Q |
19 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23446845 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttccatcttttctctccctgatcttagatatct |
23446746 |
T |
|
| Q |
119 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaa |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
23446745 |
agatttacgagactgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttactcgatggttgtgcatctctcacagaa |
23446646 |
T |
|
| Q |
219 |
ttttcagtgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgc |
318 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23446645 |
ttttcggtgacatcagatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaacagaaaacttacttcgc |
23446546 |
T |
|
| Q |
319 |
ttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcac |
418 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
23446545 |
ttggcctatccgagtgtaacaagcttaacattgttgggaataagttaacaaatgatcatggacttgggtctgttaccgagctagaccttttagggtgcac |
23446446 |
T |
|
| Q |
419 |
agaaatgaatgcattaagtctgtggtc |
445 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
23446445 |
agaaatcaatgcattaagtctgtggtc |
23446419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 23453617 - 23453194
Alignment:
| Q |
19 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatct |
118 |
Q |
| |
|
||||||||| ||||||||||||| |||| | ||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
23453617 |
tatctaaggatacaaatcttcatggagtgt----ttttcaatgtgaaagcctgtgtcagctccatccttccatcttctgtctccctgatcttagatatct |
23453522 |
T |
|
| Q |
119 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
23453521 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttactcgatggttgttcaactctcacagaa |
23453422 |
T |
|
| Q |
219 |
ttttcagtgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgc |
318 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
23453421 |
tttttggtgacatcggaggaaatgacagagttgaccttaggcggcactgctatacgtgaattgtcttcatcgatttggcgcaatagcaaacttacttggc |
23453322 |
T |
|
| Q |
319 |
ttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcac |
418 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||| |
|
|
| T |
23453321 |
ttggcctatctgagtgtaacaagcttaaaattgttgggaataagttaagagatgatcatggactgtggtctgttacaaagctagacctttcagggtgcac |
23453222 |
T |
|
| Q |
419 |
agaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
|||||| |||||||||||||| |||||| |
|
|
| T |
23453221 |
agaaatcaatgcattaagtctttggtcc |
23453194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 23439444 - 23439017
Alignment:
| Q |
19 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatct |
118 |
Q |
| |
|
|||||| ||||||||||||| |||| || ||| | ||||||||||||| || ||||||||||||| || ||||||||||||||| |||| || ||| |
|
|
| T |
23439444 |
tatctagggctacaaatcttggaagagcatctctctgtcaatgtgaaagcttgcgtcagctccatccatccatcttttctctccctcgacttacatttct |
23439345 |
T |
|
| Q |
119 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaa |
218 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
23439344 |
agatttaggaggttgcattactattgaaagccttaaaacgaacattcattcaaaatctcttcgtgaactcttactggatggttgttcatctctcacagaa |
23439245 |
T |
|
| Q |
219 |
ttttcagtgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgc |
318 |
Q |
| |
|
||||| || | || ||| ||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
23439244 |
ttttcggttacattggaggaaattacagagttattcttacgtggcactgctatacgtgagttgtcttcatcgatttggcgtaataccaaacttacttctc |
23439145 |
T |
|
| Q |
319 |
ttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcac |
418 |
Q |
| |
|
|| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
23439144 |
tttccataactaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggactggggtctgttacacagctagacctttcagggtgcac |
23439045 |
T |
|
| Q |
419 |
agaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
|||||| |||||||||||||| |||||| |
|
|
| T |
23439044 |
agaaatcaatgcattaagtctatggtcc |
23439017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 23351542 - 23351115
Alignment:
| Q |
19 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatct |
118 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||| | |||||||||||||||| ||||||||||||| || ||||||||||||||| |||| || ||| |
|
|
| T |
23351542 |
tatctagggctacaaatcttgaaagagtatatctctgtcaatgtgaaagcctgcgtcagctccatccatccatcttttctctccctcgacttatatttct |
23351443 |
T |
|
| Q |
119 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaa |
218 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||| | ||| |||| ||||||| ||| |
|
|
| T |
23351442 |
agatttagaagattgcataaagattgaaagccttaaaaccaacattcattcaaaatctctttgtaaacttaaactcggtggctgttcatctctcatcgaa |
23351343 |
T |
|
| Q |
219 |
ttttcagtgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgc |
318 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
23351342 |
ttttcagtgacatcggaggaaatgacaaagttaaccttacatggcactgctatacgtgaattgtcctcatcgatttggcgtaatagaaaacttacttctc |
23351243 |
T |
|
| Q |
319 |
ttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcac |
418 |
Q |
| |
|
|||||||| | |||| || || |||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
23351242 |
ttggcctaactgagtgcaaaaatcttaactttgttgggaataagttatcaaatgatcagggactggggtctgttacagaactagacctctctgggtgcac |
23351143 |
T |
|
| Q |
419 |
agaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
|||||| |||||| |||||||||||||| |
|
|
| T |
23351142 |
agaaatcaatgcactaagtctgtggtcc |
23351115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 58 - 446
Target Start/End: Complemental strand, 23404212 - 23403824
Alignment:
| Q |
58 |
aatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaaaagattgaaagccttaaaac |
157 |
Q |
| |
|
||||||||||| || |||| |||||||| || ||||||||||||||| | ||| ||||||||| ||| ||||||||| || ||||||||||||||||| |
|
|
| T |
23404212 |
aatgtgaaagcttgcgtcaactccatccatccatcttttctctccctcaacttcaatatctagacttaagaggttgcataagtattgaaagccttaaaac |
23404113 |
T |
|
| Q |
158 |
caacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaattttcagtgatatcggatgaaatgacagagttgacctta |
257 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||| ||| |||||| ||||||||| | || ||||| |
|
|
| T |
23404112 |
aaacattcattcaaaatctctttgtcaactcttactcaatggttgttcatctctcacagaattttcaatgacatcggaggaaatgacaaaattatcctta |
23404013 |
T |
|
| Q |
258 |
ggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgcttggcctatccaagtgtaacaagcttaacattgttggga |
357 |
Q |
| |
|
||| |||| |||||| ||||||| ||||||||||||||| ||||| ||||||||| |||| |||| | ||||||||||||| |||||||||| |
|
|
| T |
23404012 |
tgtgacacttctatacatgaattgacttcatcgatttggcataataccaaacttactgttcttgacctagctggatgtaacaagcttactattgttggga |
23403913 |
T |
|
| Q |
358 |
ataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcacagaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
23403912 |
ataagttaacagatgatcatggactggggtctgttacagagctagacctttcagggtgcacagaaatcaatgcatcaagtctgtggtcc |
23403824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 58 - 446
Target Start/End: Complemental strand, 23462831 - 23462443
Alignment:
| Q |
58 |
aatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaaaagattgaaagccttaaaac |
157 |
Q |
| |
|
||||||||||| || |||| |||||||| || ||||||||||||||| | ||| ||||||||| ||| ||||||||| || ||||||||||||||||| |
|
|
| T |
23462831 |
aatgtgaaagcttgcgtcaactccatccatccatcttttctctccctcaacttcaatatctagacttaagaggttgcataagtattgaaagccttaaaac |
23462732 |
T |
|
| Q |
158 |
caacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaattttcagtgatatcggatgaaatgacagagttgacctta |
257 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||||| | || ||||| |
|
|
| T |
23462731 |
aaacattcattcaaaatctcttcgtcaactcttactcaatggttgttcatctctcacagaattttcagtgacatcggaggaaatgacaaaattatcctta |
23462632 |
T |
|
| Q |
258 |
ggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgcttggcctatccaagtgtaacaagcttaacattgttggga |
357 |
Q |
| |
|
||| |||| |||||| ||||||| ||||||||||||||| ||||| ||||||||| |||| |||| | ||||||||||||| |||||||||| |
|
|
| T |
23462631 |
cgtgacacttctatacatgaattgacttcatcgatttggcataataccaaacttactgttcttgacctagctggatgtaacaagcttactattgttggga |
23462532 |
T |
|
| Q |
358 |
ataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcacagaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||| |||| |
|
|
| T |
23462531 |
ataagttaacagatgatcatggactggggtctgttacagagctagacctttctgggtgcacagaaatcaatgcaataagtctgtcgtcc |
23462443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 23471980 - 23471553
Alignment:
| Q |
19 |
tatctaaggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatct |
118 |
Q |
| |
|
|||||| ||||||||||||| | | |||| |||| | | |||||||||||||| |||| |||||||| | ||||||||||||||| |||| || |
|
|
| T |
23471980 |
tatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatacatcttttctctccctcgacttattgtact |
23471881 |
T |
|
| Q |
119 |
agatttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaa |
218 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||| ||||| || | || |||||||||||||| ||||||| ||| |
|
|
| T |
23471880 |
agatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctctccgaaaccttaaacttgatggttgttcatctctcatggaa |
23471781 |
T |
|
| Q |
219 |
ttttcagtgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgc |
318 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||||| ||||||||| ||||| | ||||||||||||| ||||||||||||| ||| | ||| |
|
|
| T |
23471780 |
ttttcagtgacatcggaggaaatgacagagttatccttatgtggcactgatatacatcaattgtcttcatcaatttggcgtaataccaaaatgactgtta |
23471681 |
T |
|
| Q |
319 |
ttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcac |
418 |
Q |
| |
|
|| |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
23471680 |
ttaacctaactggatgtaacaagcttaacattgtcgggaataagttatcagatgatcatggacttgggtttgttacggaactagacctttcagggtgcac |
23471581 |
T |
|
| Q |
419 |
agaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
|||||| |||||||||||| |||||||| |
|
|
| T |
23471580 |
agaaattaatgcattaagtttgtggtcc |
23471553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 196 - 446
Target Start/End: Complemental strand, 23382930 - 23382680
Alignment:
| Q |
196 |
atggttgttattctctcacagaattttcagtgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttg |
295 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23382930 |
atggttgttcatctctcacagaattttcggtgacatcggaagaaatgacagagttattcttagatggcactgctatacgtgaattgtcttcatcgttttg |
23382831 |
T |
|
| Q |
296 |
gcgtaatagaaaacttacttcgcttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttaca |
395 |
Q |
| |
|
| |||||| ||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| |
|
|
| T |
23382830 |
gtgtaataccaaacttactgttcttgacctaattggatgtaacaagcttaacattgttgggaaaaagttatcagatgatcatggacttttgtcggttaca |
23382731 |
T |
|
| Q |
396 |
gaactagacctttcagggtgcacagaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23382730 |
gaactagacctttcagggtgcacagaaatcaatgcattaagtctgtggtcc |
23382680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 186 - 446
Target Start/End: Complemental strand, 23468307 - 23468047
Alignment:
| Q |
186 |
ctcttacttgatggttgttattctctcacagaattttcagtgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtctt |
285 |
Q |
| |
|
|||||| |||||||||||| || |||| |||||||| |||| ||| || |||||||||||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
23468307 |
ctcttagttgatggttgttcatccctcatggaattttcggtgacatcagaggaaatgacagagttatccttacatggcactgctatacgtgaattatctt |
23468208 |
T |
|
| Q |
286 |
catcgatttggcgtaatagaaaacttacttcgcttggcctatccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgg |
385 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||| ||| | ||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23468207 |
tatcgatttggcgtaattgcaaacttacttctcttggtctaactgagtgtaacaagctcaacactgttgggaagaagttatcagatgatcatgggcttgg |
23468108 |
T |
|
| Q |
386 |
gtctgttacagaactagacctttcagggtgcacagaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23468107 |
gtttgttaccgaactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtcc |
23468047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 58 - 275
Target Start/End: Complemental strand, 23385841 - 23385624
Alignment:
| Q |
58 |
aatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaaaagattgaaagccttaaaac |
157 |
Q |
| |
|
|||||||||||||| ||||||||||||| || ||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||| | |
|
|
| T |
23385841 |
aatgtgaaagcctgcgtcagctccatccatccatcttttctctccctcgaattatatatctagatttaagaggttgcataaagattgaaagccttaaatc |
23385742 |
T |
|
| Q |
158 |
caacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaattttcagtgatatcggatgaaatgacagagttgacctta |
257 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||||| |||| |||||| |||||||||||||| |||| |
|
|
| T |
23385741 |
caacattcattcaaaatctctctgtgtacttttactcaatggttgttcatctctcacagaattttcggtgacatcggaagaaatgacagagttattctta |
23385642 |
T |
|
| Q |
258 |
ggtggcactgctatacgt |
275 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
23385641 |
gatggcactgctatacgt |
23385624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 163 - 446
Target Start/End: Complemental strand, 23401614 - 23401331
Alignment:
| Q |
163 |
ttcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaattttcagtgatatcggatgaaatgacagagttgaccttaggtgg |
262 |
Q |
| |
|
||||||||||||| || | |||||||||||||||| |||| ||||||| ||||||||||| | ||| || |||||| | | ||| ||||| ||| |
|
|
| T |
23401614 |
ttcattcaaaatccctctggaaactcttacttgatggctgttcatctctcattgaattttcagtaacatcagagaaaatgatacatttgtccttacatgg |
23401515 |
T |
|
| Q |
263 |
cactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgcttggcctatccaagtgtaacaagcttaacattgttgggaataag |
362 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |||| ||| | | ||||||||||| |||| || |||||||||| |
|
|
| T |
23401514 |
cactgctatacatgaattgccttcatcgatttggcgtaatagcaaacttacttttcttgatctaactgaatgtaacaagctgaacaatgctgggaataag |
23401415 |
T |
|
| Q |
363 |
ttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcacagaaatgaatgcattaagtctgtggtcc |
446 |
Q |
| |
|
||||| ||||||||||||| | ||||||| ||||||||||||||| | |||||||||||| ||| |||||| ||||||||| |
|
|
| T |
23401414 |
ttatccaatgatcatggactgagatctgttaaagaactagacctttctgagtgcacagaaatcaatacattaaaactgtggtcc |
23401331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 36001953 - 36001906
Alignment:
| Q |
132 |
tgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctt |
179 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36001953 |
tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt |
36001906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 36023026 - 36022970
Alignment:
| Q |
122 |
tttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctct |
178 |
Q |
| |
|
|||| |||| |||||||| ||||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
36023026 |
tttaagaggatgcaaaaatattgaaagcctgaaaaccaacatttcttccaaatctct |
36022970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 26 - 446
Target Start/End: Complemental strand, 11008 - 10588
Alignment:
| Q |
26 |
ggctacaaatcttcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttcgatcttttctctccctgatcttagatatctagattta |
125 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||| |||||||| ||||||||||| | || ||| ||||||||||| ||| |||||||||||| |
|
|
| T |
11008 |
ggctacaaatcttcaaagtctatatctcactcaatgtaaaagcctgcgtcagctccatacatccatcctttctctccctcgacttgattatctagattta |
10909 |
T |
|
| Q |
126 |
cgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctcttcgtgaactcttacttgatggttgttattctctcacagaattttcag |
225 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| || | ||||||||||||||||| |||| ||| ||||| ||||||||| ||||||||||||||||| | |
|
|
| T |
10908 |
cgaggttgcataaatattgaaagccttaaagccgagattcattcaaaatctctccgtgtacttttactcaatggttgttcatctctcacagaattttcgg |
10809 |
T |
|
| Q |
226 |
tgatatcggatgaaatgacagagttgaccttaggtggcactgctatacgtgaattgtcttcatcgatttggcgtaatagaaaacttacttcgcttggcct |
325 |
Q |
| |
|
||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||| ||| |
|
|
| T |
10808 |
tgacatcggaagaaatgacagagttattcttagatggcactgctatacgtgaattgtcttcatcgttttggtgtaataccaaacttactgttcttgacct |
10709 |
T |
|
| Q |
326 |
atccaagtgtaacaagcttaacattgttgggaataagttatcagatgatcatggacttgggtctgttacagaactagacctttcagggtgcacagaaatg |
425 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||| || || |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
10708 |
aattggatgtaacaagcttaacattgttgggaaaaagttatcagatgatcatggatttttatcggttacacaactagacctttcagggtgtacagaaatc |
10609 |
T |
|
| Q |
426 |
aatgcattaagtctgtggtcc |
446 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10608 |
aatgcattaagtctgtggtcc |
10588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 12897553 - 12897603
Alignment:
| Q |
128 |
aggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctct |
178 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
12897553 |
aggttgcaaaaagattgaaagcctgaaaactaacattcattcaaaatctct |
12897603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 16338083 - 16338133
Alignment:
| Q |
128 |
aggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctct |
178 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
16338083 |
aggttgtaaaaagattgaaagccttgtaactgacattcattcaaaatctct |
16338133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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