View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13266_low_6 (Length: 312)
Name: NF13266_low_6
Description: NF13266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13266_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 117 - 294
Target Start/End: Complemental strand, 12944784 - 12944607
Alignment:
| Q |
117 |
aatcaatgaattttttctctttgtggtttaggatttgaaaatccgagttccgcatgttgtcatcaagcaggtcgatatggaggattggtcacttgtacgg |
216 |
Q |
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| T |
12944784 |
aatcaatgaattttttctctttgtggtttaggatttgaaaatccgagttccgcatgttgtcatcaagcaggtcgatatggaggattggtcacttgtacgg |
12944685 |
T |
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| Q |
217 |
gtgtttcaaaagtttgtgaagatcgatccaagtacattttttgggatactttccatcccagtgatgctgccaatgttt |
294 |
Q |
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| T |
12944684 |
gtgtttcaaaagtttgtgaagatcgatcgaagtacattttttgggatactttccatcccagtgatgctgccaatgttt |
12944607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 12944943 - 12944837
Alignment:
| Q |
11 |
taattctttatgcagatgcttaccacattactcaagatatgatcaagaattatcaaaaatatggtaacattaatcattttcgtttaccacgtttcttttg |
110 |
Q |
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| T |
12944943 |
taattctttatgcagatgcttacgacattactcaagatatgatcaagaattataaaaaatatggtaacattcatcattttcgtttaccacgtttcttttg |
12944844 |
T |
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| Q |
111 |
tttgaaa |
117 |
Q |
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| T |
12944843 |
tttgaaa |
12944837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 12938991 - 12938919
Alignment:
| Q |
221 |
ttcaaaagtttgtgaagatcgatccaagtacattttttgggatactttccatcccagtgatgctgccaatgtt |
293 |
Q |
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| T |
12938991 |
ttcaaaagtttgtgaagatcgatctaagtacattttttgggatactttccatcccagtgatgctgccaatgtt |
12938919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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