View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13267_high_1 (Length: 213)
Name: NF13267_high_1
Description: NF13267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13267_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 49433099 - 49433285
Alignment:
| Q |
19 |
ccagtttcctgccatttgttacagagctcagtcttgaacatcccctggttgtacacaaccatctcaagaggctcttcctctttctgccctcctcgcacaa |
118 |
Q |
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| T |
49433099 |
ccagtttcctgccatttgttacagagctcagtcttgaacatcccctggttgtacacaaccatctcaagaggctcttcctctttctgccctcctcgcacaa |
49433198 |
T |
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| Q |
119 |
ataccttttgctgcaagcatagtaacacaaaatttcaacaataatcaattcttccgaatatcaacaatcaaatctagatgatgtcca |
205 |
Q |
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| T |
49433199 |
ataccttttgctgcaagcatagtaacacaaaatttcaacaataatcaattcttccgaatatcaacaatcaaatctatataatgtcca |
49433285 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 39170894 - 39170934
Alignment:
| Q |
47 |
cagtcttgaacatcccctggttgtacac-aaccatctcaag |
86 |
Q |
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| T |
39170894 |
cagtcttgaacatcccctggttgtacacaaaccatctcaag |
39170934 |
T |
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