View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13267_high_1_N (Length: 560)
Name: NF13267_high_1_N
Description: NF13267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13267_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 60 - 444
Target Start/End: Complemental strand, 10085412 - 10085016
Alignment:
| Q |
60 |
cttgagattaggttcagctcttttctcaccccatgttcggacgacaacattgttcgcctaaaacataaat--tatcccatgaattt--caatacagacaa |
155 |
Q |
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| T |
10085412 |
cttgagattagattaagctcttttctcaccccatgttcggacggcaacattgtttgcctaaaacataaatattatcccatgaatttttcaatacaaactc |
10085313 |
T |
|
| Q |
156 |
aacattatcaaagaaaaaatcaatagaattgtaaataaagcaaacctcatcattgctaatgggaacagaatcatgaactag---------ggtttccaat |
246 |
Q |
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| T |
10085312 |
tatattatctaagaaaaaatcaatagaattgtaaataaaacaaacgtcgtcattgctaatgggaacagaatcatgaacaaggtttccaatggtttccaac |
10085213 |
T |
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| Q |
247 |
ttagaactcaagaggtttagggtttcttgagcctcaaccctctttctcaacgannnnnnncttaatctctttagatttagaaataaactcggatgcatct |
346 |
Q |
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| T |
10085212 |
ttagaattcaagaggtttacggtttcctgagcctcaa-cctctttaacagcgactttttttttaatctctttagatttagaaataaactcggcagcatct |
10085114 |
T |
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| Q |
347 |
tcaccacctcgcttgagtttggaaacttccatgttgattttgttgaatcatttactaagattctcaaactcaaattgacgttttcgccattctatgtc |
444 |
Q |
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| T |
10085113 |
tcaccacctcgcttgagtttggaaacttccgtgttgattttgttgaattctttacgaagattcttcaactcaaattgatgttttcgccattctttgtc |
10085016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 60 - 354
Target Start/End: Complemental strand, 36860179 - 36859878
Alignment:
| Q |
60 |
cttgagattaggttcagctcttttctcaccccatgttcggacgacaacattgttcgcctaaaacataaattatcccatgaatttcaatacagacaaaaca |
159 |
Q |
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| T |
36860179 |
cttgagcttcggttcatctcttttctcaccccatgttcggacgacaagattattagcctaaaacataaattatcctatgaatttcaa-acaaatactaca |
36860081 |
T |
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| Q |
160 |
ttatcaaagaaaaaatcaatagaattgtaaataaagcaaacctcatcattgctaatgggaacagaatcatgaactag---------ggtttccaatttag |
250 |
Q |
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| T |
36860080 |
ttatcaaagaaaaaatcaatagaattgtaaataaaacaaacctcatcattgctgatgggaacagaatcatgaacgaggtttccaatggtttccaatttag |
36859981 |
T |
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| Q |
251 |
aactcaagaggtttagggtttcttgagcctcaaccctctttctcaacgannnnnnncttaatctctttagatttagaaataaactcggatgcatcttcac |
350 |
Q |
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| T |
36859980 |
aattcaagaggtttagggtttcctgagcctcaa-cctctttttcagctatctttttcttaatctcttcagatttagcaataaactcggttgcatcttcac |
36859882 |
T |
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| Q |
351 |
cacc |
354 |
Q |
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|||| |
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| T |
36859881 |
cacc |
36859878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 36859802 - 36859731
Alignment:
| Q |
354 |
ctcgcttgagtttggaaacttccatgttgattttgttgaatcatttactaagattctcaaactcaaattgac |
425 |
Q |
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| T |
36859802 |
ctcgcttgagtttggaaacttccttattgattttgttgacttctttacggagattctcaaactcgaattgac |
36859731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 455 - 541
Target Start/End: Complemental strand, 4764327 - 4764245
Alignment:
| Q |
455 |
tcagtagttggacttaagtttttgcttgcttaagtcccttgcaactgttttgccaggtgcaggttgatagtgtcttaattcatgtct |
541 |
Q |
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| T |
4764327 |
tcagaagttggacttaagtttttgctt----aagtcccttgcaactgttttgccaggtgcaggttgatagtttcttaattcatgtct |
4764245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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