View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13267_high_7 (Length: 306)
Name: NF13267_high_7
Description: NF13267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13267_high_7 |
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| [»] scaffold0466 (1 HSPs) |
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| [»] scaffold1041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 25495096 - 25495360
Alignment:
| Q |
2 |
acacacgccacaacttcaaccccacaattattttggtagtttcttacttttgagcatgattcgagtcatatcaagaattgttctaattttccttcctaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25495096 |
acacacgccacaacttcaaccccacaattattttggtagtttcttacttttgagcatgattcgagtcatatcaagaattgttctaattttccttcctaaa |
25495195 |
T |
|
| Q |
102 |
aatcatggttccaaccataatttgttatgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttagaagttaattcatatc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25495196 |
aatcatggttccaaccataatttgttatgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttagaagttaattcatatc |
25495295 |
T |
|
| Q |
202 |
ctcggtacgtccatatagcttttatctgcaagctggttctctcgattgtacctttgttattcttg |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25495296 |
ctcggtacgtccatatagcttttatctgcaagctggttctctcgattgtacctttgttattcttg |
25495360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 25651165 - 25651309
Alignment:
| Q |
122 |
tttgttatgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttagaagttaattcatatcctcggtacgtccatatagct |
221 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
25651165 |
tttgttctgttttgttagttgaagcctaattcaattatctttcacaaactcttgaaactctttagaagttaattcacatcttcggtacgtccatatagct |
25651264 |
T |
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| Q |
222 |
tttatctgcaagctggttctctcgattgtacctttgttattcttg |
266 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25651265 |
tttatctgcaagctggttctctcgatagtacctttgttattcttg |
25651309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 25618204 - 25618388
Alignment:
| Q |
2 |
acacacgccacaacttcaaccccacaattattttggtagtttcttacttttgagcatgattcgagtcatatcaagaattgttctaattttccttcctaaa |
101 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
25618204 |
acacacgccacaacttaaaccc-acaattattttggtagtttcttactttggagcatgattcgagccatatcaacaattgttctaattttccttc----- |
25618297 |
T |
|
| Q |
102 |
aatcatggttccaaccataatttgttatgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttagaagttaattcatatc |
201 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25618298 |
----------------ataatttgttttgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttagaaattaattcatatc |
25618381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 25650929 - 25651055
Alignment:
| Q |
2 |
acacacgccacaacttcaaccccacaattattttggtagtttcttacttttgagcatgattcg-----agtcatatcaagaattgttctaattttccttc |
96 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
25650929 |
acacacgccacaacttcaaccc-acaattattttggtagtttcttacttttgagcatgattcgagccaagccatatcaagaattgttctaattttccttc |
25651027 |
T |
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| Q |
97 |
ctaaaaatcatggttccaaccataattt |
124 |
Q |
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||| ||| |||||||| ||||||||||| |
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| T |
25651028 |
ctacaaagcatggttcgaaccataattt |
25651055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 25359196 - 25359256
Alignment:
| Q |
188 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgcaagctggttctctc |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25359196 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctc |
25359256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 25399229 - 25399289
Alignment:
| Q |
188 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgcaagctggttctctc |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25399229 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctc |
25399289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 25359160 - 25359199
Alignment:
| Q |
2 |
acacacgccacaacttcaaccccacaattattttggtagtt |
42 |
Q |
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||||||||||||||||||| || |||||||||||||||||| |
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| T |
25359160 |
acacacgccacaacttcaa-ccaacaattattttggtagtt |
25359199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 6260 - 5996
Alignment:
| Q |
2 |
acacacgccacaacttcaaccccacaattattttggtagtttcttacttttgagcatgattcgagtca-----tatcaagaattgttctaattttccttc |
96 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
6260 |
acacacgccacaacttcaaccc-acaattattttggtagtttcttacttttgagcatgattcgagccaagccatatcaagaattgttctaattttccttc |
6162 |
T |
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| Q |
97 |
ctaaaaatcatggttccaaccataatttgttatgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttagaagttaattc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6161 |
ctaaaaatcatggttccaaccataatttgttatgttttgttagttgaagcctaattcaattctctttcacaaactcttgaaactctttagaagttaattc |
6062 |
T |
|
| Q |
197 |
atatcctcggtacgtccatatagcttttatctgcaagctggttctctcgattgtacctttgttatt |
262 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
6061 |
atatcctcggtacgtccatatagcttttatctgtaagctggttctctcgattttacctttgttatt |
5996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 56 - 266
Target Start/End: Complemental strand, 549 - 348
Alignment:
| Q |
56 |
catgattcgagtcatatcaagaattgttctaattttccttcctaaaaatcatggttccaaccataatttgttatgttttgttagttgaagcctaattcaa |
155 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
549 |
catgattcgagccatatcaagaattgttctaattttccttcctaaaaagaatggttcggaccataatttgttctgttttgttagttgaagcctaattcaa |
450 |
T |
|
| Q |
156 |
ttctctttcacaaactcttgaaactctttagaagttaattcatatcctcggtacgtccatatagcttttatctgcaagctggttctctcgattgtacctt |
255 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |
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|
| T |
449 |
ttctctttca---------gaaactctttagaagttaatccatatcctcggtacgtccatatagcttttatctgcaagctggttctctccataatagctt |
359 |
T |
|
| Q |
256 |
tgttattcttg |
266 |
Q |
| |
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||||||||||| |
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|
| T |
358 |
tgttattcttg |
348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 15673487 - 15673539
Alignment:
| Q |
32 |
ttttggtagtttcttacttttgagcatgattcgagtcatatcaagaattgttc |
84 |
Q |
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||||||||| |||||||||||||||||| |||||| ||||||||| ||||||| |
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|
| T |
15673487 |
ttttggtagattcttacttttgagcatgcttcgagccatatcaagtattgttc |
15673539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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