View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13267_low_1 (Length: 213)

Name: NF13267_low_1

Description: NF13267

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13267_low_1

[»] chr1 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 179; E-Value: 9e-97

Query Start/End: Original strand, 19 - 205

Target Start/End: Original strand, 49433099 - 49433285

Alignment:

Q	19	ccagtttcctgccatttgttacagagctcagtcttgaacatcccctggttgtacacaaccatctcaagaggctcttcctctttctgccctcctcgcacaa	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49433099	ccagtttcctgccatttgttacagagctcagtcttgaacatcccctggttgtacacaaccatctcaagaggctcttcctctttctgccctcctcgcacaa	49433198	T

Q	119	ataccttttgctgcaagcatagtaacacaaaatttcaacaataatcaattcttccgaatatcaacaatcaaatctagatgatgtcca	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	49433199	ataccttttgctgcaagcatagtaacacaaaatttcaacaataatcaattcttccgaatatcaacaatcaaatctatataatgtcca	49433285	T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 47 - 86

Target Start/End: Original strand, 39170894 - 39170934

Alignment:

Q	47	cagtcttgaacatcccctggttgtacac-aaccatctcaag	86	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	39170894	cagtcttgaacatcccctggttgtacacaaaccatctcaag	39170934	T

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