View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13268_high_3 (Length: 405)
Name: NF13268_high_3
Description: NF13268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13268_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 40624437 - 40624810
Alignment:
| Q |
15 |
gagaagaaaaccacaaccagaacctattactcgaagtagtagctttttgtccaattaccaaggttagtttaaagttatagctagctaacatattatctga |
114 |
Q |
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| T |
40624437 |
gagaagaaaaccacaaccagaacctattactcgaagtagtagctttttgtccaattaccaaggttagtttaaagttatagctagctaacatattatctga |
40624536 |
T |
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| Q |
115 |
gtggacccaataattgtctagatttggagcagacaattgctgaggatccccacataggtacaaacatcttaaaagagtcagaaataacacaaaaattaca |
214 |
Q |
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| T |
40624537 |
gtggacccaataattgtctagatttggagcagacaattgctgaggatccccacataggtacaaacatcttaaaagagtcagaaataacacaaaaattaca |
40624636 |
T |
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| Q |
215 |
taatgcacttggctggctggctagctacctcaccatgcttgatttggtccacttatttgccatgtttatgacaatctagtggccattactaaaacaacaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624637 |
taatgcacttggctggctggctagctacctcaccatgcttgatttggtccacttatttgccatgtttatgacaatctagtggccattactaaaacaacaa |
40624736 |
T |
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| Q |
315 |
acatgtcactatgtcagtactacacacatacataaaagacttttcagcttttgagtgagggcaagctagttagt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624737 |
acatgtcactatgtcagtactacacacatacataaaagacttttcagcttttgagtgagggcaagctagttagt |
40624810 |
T |
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