View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13268_low_2 (Length: 618)
Name: NF13268_low_2
Description: NF13268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13268_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 573; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 22 - 610
Target Start/End: Original strand, 49267770 - 49268358
Alignment:
| Q |
22 |
cctagagcattggctcgttgctgctcctggcactcctctggactcaccaacaagtttgatatcgaatgtgtactttgtttgttggtccataaaattacta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49267770 |
cctagagcattggctcgttgctgctcctggcactcctctggactcaccaacaagtttgatatcgaatgtgtactttgtttgttggtccataaaattacta |
49267869 |
T |
|
| Q |
122 |
atagaagaaacattcatgaatatttttgaagttttttgatacattgaaggactataatgacattgcctcgcagatttagggaccaaaatcaatgtatact |
221 |
Q |
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| T |
49267870 |
atagaagaaacattcatgaatatttttgaagttttttgatacattgaaggactataatgacattgcctcacagatttagggaccaaaatcaatgtatact |
49267969 |
T |
|
| Q |
222 |
tattatttgaatccaattattatgaaattgattgcattttattttatactttgtgcatatcaaacagtttggaatgtcatgtgcacttgaaactcaatgc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49267970 |
tattatttgaatccaattattatgaaattgattgcattttattttatactttgtgcatatcaaacagtttggaatgtcatgtgcacttgaaactcaatgc |
49268069 |
T |
|
| Q |
322 |
ggacaagcttatggcgcaaagcaatataaaaaatttggtgttcaaatttacactgctgtcttttctcttattatagcttgtcttcctctatctctattat |
421 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49268070 |
ggacaagcttatggtgcaaagcaatataaaaaatttggtgttcaaatttacactgctgtcttttctcttattatagcttgtcttcctctatctctattat |
49268169 |
T |
|
| Q |
422 |
ggatcttcttgggaaggctattgattttactcggtcaagaccctctgatttcacaagaagctggaaaatttgccatgtgcatgattcctgctctatttgc |
521 |
Q |
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| T |
49268170 |
ggatcttcttgggaaggctattgattttactcggtcaagaccctctgatttcacaagaagctggaaaattttccatgtgcatgattcctgctctatttgc |
49268269 |
T |
|
| Q |
522 |
ttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttataagttccactgttaccctatgct |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49268270 |
ttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttataagttccactgttaccctgtgct |
49268358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 242 - 605
Target Start/End: Original strand, 49255266 - 49255629
Alignment:
| Q |
242 |
tatgaaattgattgcattttattttatactttgtgcatatcaaacagtttggaatgtcatgtgcacttgaaactcaatgcggacaagcttatggcgcaaa |
341 |
Q |
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||||||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
49255266 |
tatgaaattaattgcattttattatatattttgtacatatcaaacagtttggaatgtcatgtgcacttgaaacgcaatgcggacaagcttatggtgcaaa |
49255365 |
T |
|
| Q |
342 |
gcaatataaaaaatttggtgttcaaatttacactgctgtcttttctcttattatagcttgtcttcctctatctctattatggatcttcttgggaaggcta |
441 |
Q |
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| T |
49255366 |
gcaatatagaaagtttggtgttcaagtttacactgctatcatttctcttattatagcttgtgttcctctctctttattgtggctcaacttggggaagtta |
49255465 |
T |
|
| Q |
442 |
ttgattttactcggtcaagaccctctgatttcacaagaagctggaaaatttgccatgtgcatgattcctgctctatttgcttatgcaacgcttcaggcac |
541 |
Q |
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||| |||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
49255466 |
ctgagtttacttggccaagaccctttgatttcacaagaagctggaaaatttgctatgtgcatgattcctgctctttttgcttatgcaactcttcaggcac |
49255565 |
T |
|
| Q |
542 |
tggtcagatactttctgatgcaaagtttgatacttcctcttgttataagttccactgttaccct |
605 |
Q |
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|||||||||||||||| |||||||||||| | ||||||||||||||||||||| |||||||||| |
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| T |
49255566 |
tggtcagatactttcttatgcaaagtttggttcttcctcttgttataagttcctctgttaccct |
49255629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 429 - 605
Target Start/End: Complemental strand, 49274180 - 49274004
Alignment:
| Q |
429 |
cttgggaaggctattgattttactcggtcaagaccctctgatttcacaagaagctggaaaatttgccatgtgcatgattcctgctctatttgcttatgca |
528 |
Q |
| |
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|||||| | ||||| || ||||||||| ||||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
49274180 |
cttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgca |
49274081 |
T |
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| Q |
529 |
acgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttataagttccactgttaccct |
605 |
Q |
| |
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|| |||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| |
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| T |
49274080 |
acacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcctctgttaccct |
49274004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 500 - 588
Target Start/End: Original strand, 49273272 - 49273360
Alignment:
| Q |
500 |
gcatgattcctgctctatttgcttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttata |
588 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
49273272 |
gcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgttata |
49273360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 475 - 602
Target Start/End: Original strand, 29356746 - 29356873
Alignment:
| Q |
475 |
caagaagctggaaaatttgccatgtgcatgattcctgctctatttgcttatgcaacgcttcaggcactggtcagatactttctgatgcaaagtttgatac |
574 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || | || |||||| ||||||||||||||||||||||||| |
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| T |
29356746 |
caagaagctggaaaatttgctatgtgcatgattcctgctctatttgcttatgcaactcctcggccaatggtcatatactttctgatgcaaagtttgatag |
29356845 |
T |
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| Q |
575 |
ttcctcttgttataagttccactgttac |
602 |
Q |
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||| ||||||||||| |||||||||||| |
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| T |
29356846 |
ttcatcttgttataacttccactgttac |
29356873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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