View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13268_low_4 (Length: 379)
Name: NF13268_low_4
Description: NF13268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13268_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 369
Target Start/End: Complemental strand, 30928841 - 30928481
Alignment:
| Q |
9 |
ttgaaaatgaattataagaaatggattctactgattgttctacactgcacagcattcatatgggtctgtgactggagatcgatactatggagcaaaggct |
108 |
Q |
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| T |
30928841 |
ttgaaaatgaattataagaaatggattcttctgattgctctacactgcacagcattcatatgggtctgtgactggagatcgatactatggagcaaaggct |
30928742 |
T |
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| Q |
109 |
acaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggtcctcgccaatggaaatgagaacaccattgaagctg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30928741 |
acaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggtcctcgccaatggaaatgagaacaccattgaagctg |
30928642 |
T |
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| Q |
209 |
gttggcaggcatgttcataaataacatacnnnnnnnnnnatctattcattcccactttaattcatttcctatatgcatggatattttatctatttaatta |
308 |
Q |
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| T |
30928641 |
gttggcaggcatgttcataaataacatacttttctttttatctattcatttccactttaattcatttcctatatgcatagatattttatctatttaatta |
30928542 |
T |
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| Q |
309 |
gtatatactaatatctatatatgtcaataatcatgttatagtaatctcactttgccctttg |
369 |
Q |
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| T |
30928541 |
gtatatactaatatctatatacgtcaataatcatgttatagtaatctcactttgccctttg |
30928481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 58 - 223
Target Start/End: Complemental strand, 30908862 - 30908697
Alignment:
| Q |
58 |
cagcattcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagct |
157 |
Q |
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| T |
30908862 |
cagcattcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagct |
30908763 |
T |
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| Q |
158 |
tgtctcaaatatgggtcctcgccaatggaaatgagaacaccattgaagctggttggcaggcatgtt |
223 |
Q |
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| T |
30908762 |
tgtctcaaatatggctcgtcactggtagaaatgccaacaccattgaagctggttggcaggtatgtt |
30908697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 30918948 - 30918780
Alignment:
| Q |
69 |
tgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaata |
168 |
Q |
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||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||||| |||| |||||| ||||||||||||||||||||| |
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| T |
30918948 |
tgggtatgtgaccggagatctgtactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaata |
30918849 |
T |
|
| Q |
169 |
tgggtcctcgccaatggaaatgagaacaccattgaagctggttggcaggcatgttcataaataacatac |
237 |
Q |
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||| | || | ||||| ||||||||||||||||||||||||||||||| || ||| |||||| |
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| T |
30918848 |
tggctgacgaccggtagaaattccaacaccattgaagctggttggcaggcatgttaattaattacatac |
30918780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 40029482 - 40029510
Alignment:
| Q |
146 |
atgaattcagcttgtctcaaatatgggtc |
174 |
Q |
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| T |
40029482 |
atgaattcagcttgtctcaaatatgggtc |
40029510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 29254295 - 29254394
Alignment:
| Q |
34 |
ttctactgattgttctacactgcacagcattcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatg |
133 |
Q |
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||||||| ||| |||| |||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||||| |||||| ||||||| || |||| |
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| T |
29254295 |
ttctacttattcttct-cactgcacagcattcaattgggtctgtgactggagatagataccatggagcacaggctaccataaatgtgtgggccccccatg |
29254393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 29254461 - 29254492
Alignment:
| Q |
192 |
gaacaccattgaagctggttggcaggcatgtt |
223 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29254461 |
gaacaccattgaagctggttggcaggcatgtt |
29254492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 29234684 - 29234712
Alignment:
| Q |
193 |
aacaccattgaagctggttggcaggcatg |
221 |
Q |
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| T |
29234684 |
aacaccattgaagctggttggcaggcatg |
29234712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 29364704 - 29364776
Alignment:
| Q |
95 |
atggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaat |
167 |
Q |
| |
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|||||||||||||||||||||| ||||||| || || || ||| | |||||||||||||||| ||||||| |
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| T |
29364704 |
atggagcaaaggctacaataaacgtgtgggccccccaagtggaaagtccaaatgaattcagcttggctcaaat |
29364776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 14496728 - 14496629
Alignment:
| Q |
75 |
tgtgactggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggtc |
174 |
Q |
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| T |
14496728 |
tgtgactggaaatcaatactatggagcaaaggctagcataaacgtgtgggccccacgtgtagcaaaccaatatgaattcagcttgtcccaaatgtgggtc |
14496629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 34759934 - 34759842
Alignment:
| Q |
81 |
tggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggt |
173 |
Q |
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|||| ||| ||||| |||||||||||| | |||||| ||||||| || |||||| ||||| | ||||||| |||||||| || |||||||| |
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| T |
34759934 |
tggaaatcaatactttggagcaaaggcaaacataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggt |
34759842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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