View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13268_low_5 (Length: 356)
Name: NF13268_low_5
Description: NF13268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13268_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 33634084 - 33633745
Alignment:
| Q |
1 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
33634084 |
gttcgcatccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgattctcctccgatctcaacttctccgacgtcgttc |
33633985 |
T |
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| Q |
101 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633984 |
tcaccgttgccttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
33633885 |
T |
|
| Q |
201 |
ttttcattatcggaagtgacgaagcttgattcagtgttttcggtgaaatttcttttgcaggaagaacactatgtttcgaagctgaatttctcgtggcctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633884 |
ttttcattatcggaagtgacgaagcttgattcagtgttttcggtgaaatttcttttacaggaagaacactatgtttcgaagctgaatttctcgtggcctc |
33633785 |
T |
|
| Q |
301 |
aagtatcgtgtgatcctggatttcctgctaggggaattag |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33633784 |
aagtatcgtgtgatcctggatttcctgctaggggaattag |
33633745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 29191750 - 29191991
Alignment:
| Q |
1 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||| | | |
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| T |
29191750 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
29191849 |
T |
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| Q |
101 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
200 |
Q |
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||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||| |
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| T |
29191850 |
tcaccgttgcattcaacgccaaactccttgtaactccgataacttttcctttttcgatttcgtttctgtttt-cgctattacgtaatccatgcaactgaa |
29191948 |
T |
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| Q |
201 |
ttttcattatcggaagtgacgaagcttgattcagtgttttcgg |
243 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29191949 |
ttttgattatcggaagtgacgaagcttgattcagtgttttcgg |
29191991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 29192206 - 29192303
Alignment:
| Q |
243 |
gtgaaatttcttttgcaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggatttcctgctaggggaattag |
340 |
Q |
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|||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29192206 |
gtgatatttgttgtgcaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggatttcctgctaggggaattag |
29192303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 10668440 - 10668359
Alignment:
| Q |
243 |
gtgaaatttcttttgcaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggatttc |
324 |
Q |
| |
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||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10668440 |
gtgaaatttgttgtgtaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtattgtgtgatcctggatttc |
10668359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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