View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13269_low_2 (Length: 491)

Name: NF13269_low_2
Description: NF13269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13269_low_2
NF13269_low_2
[»] chr4 (2 HSPs)
chr4 (73-477)||(10203203-10203607)
chr4 (241-402)||(49611797-49611958)
[»] chr6 (6 HSPs)
chr6 (25-477)||(1192728-1193182)
chr6 (65-477)||(1181804-1182213)
chr6 (133-456)||(896621-896952)
chr6 (204-477)||(1187026-1187296)
chr6 (241-414)||(1197319-1197492)
chr6 (25-74)||(896962-897011)
[»] chr8 (8 HSPs)
chr8 (241-330)||(5171560-5171649)
chr8 (244-330)||(5195094-5195180)
chr8 (244-330)||(1795823-1795909)
chr8 (248-330)||(5185100-5185182)
chr8 (248-330)||(5198910-5198992)
chr8 (248-405)||(5177584-5177740)
chr8 (241-309)||(5207113-5207181)
chr8 (263-330)||(6231610-6231677)
[»] chr7 (2 HSPs)
chr7 (248-330)||(5178792-5178874)
chr7 (241-379)||(8306682-8306820)
[»] chr5 (1 HSPs)
chr5 (244-300)||(14878124-14878180)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 73 - 477
Target Start/End: Complemental strand, 10203607 - 10203203
Alignment:
Q  73 taatagtacctcttttcaacatttttcaaccaaaaagaatgcacctcttttcaagaggtaatattaaacttctaaacaaaattaaaattctagcctgaag 172  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10203607 taatagtacctcttttcaacatttttcaacaaaaaataatgtacctcttttcaagaggtaatattaaacttctaaacaaaattaaaattctagcttgaag 10203508  T
Q  173 gtaatatttgtttgatctggataagttggtgcataagctggcgacgaatctaaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatga 272  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10203507 gtaatatttgtttgatctggataagctggtgcataagctggcgacgaatctaaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatga 10203408  T
Q  273 ctttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaatcgttctcnnnnnnncccattagcgtctcaaagaaaaactg 372  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||| | ||||||||    
T  10203407 ctttcacatccttcaagccatgccaccaacacttagtttcagtagaaatgcaaaagcaatcgttctctttttttcccattagcgtctcataaaaaaactg 10203308  T
Q  373 tagttttagatgataaacaaaatagagttagaattcacaagccacagaaaacattaattataaacattttggagataaatgcacttttgccccttttcat 472  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10203307 tagttttagatgataaacaaaatagagttagaactcacaagccacagaaaacattaattataaacattttggagataaatgcacttttaccccttttcat 10203208  T
Q  473 ttgag 477  Q
    |||||    
T  10203207 ttgag 10203203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 402
Target Start/End: Complemental strand, 49611958 - 49611797
Alignment:
Q  241 aacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaatcgttctcn 340  Q
    ||||||||||||||| ||||| ||  ||  |||||||| ||||||||||||||||||||||||||| || |||  ||||  ||||| ||||||||  ||     
T  49611958 aacattctcatcaattttctttgaagttgagactttcaaatccttcaagccatgccaccaacacttggtatcactagaaccgcaaacgcaatcgtcgtct 49611859  T
Q  341 nnnnnncccattagcgtctcaaagaaaaactgtagttttagatgataaacaaaatagagtta 402  Q
          | |||||| |||||  ||||||||||||||||| ||  || ||||||||| |||||    
T  49611858 tttcttctcattagtgtctcgtagaaaaactgtagttttggacaattaacaaaatatagtta 49611797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 25 - 477
Target Start/End: Complemental strand, 1193182 - 1192728
Alignment:
Q  25 ctgtattttataagtgttggaacaaaatacctgggagttagaacaaaataatagtacctcttttcaacatttttcaacca-aaaagaatgcacctctttt 123  Q
    ||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  1193182 ctgtaatttataagtgttggaacaaaatacttgggacttggaacaaaataatagtacctcttttcaacatttttcaacatgaaaagaatgcacctctttt 1193083  T
Q  124 caagaggtaatattaaacttctaaacaaaattaaaattctagcctgaaggtaatatttgtttgatctggataagttggtgcataagctggcgacgaatct 223  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |  | |   |||||||||||||||||| ||||||    
T  1193082 caagaggtaatatcaaacttctaaacaacattaaaattctagcctgaaggtaatatttgttcgatgttcaaattctggtgcataagctggcgatgaatct 1192983  T
Q  224 aaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1192982 aaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 1192883  T
Q  324 aaaagcaatcgttctcnnnnnnncccattagcgtctcaaagaaaaactgtagttttagatgataaac-aaaatagagttagaattcacaagccacagaaa 422  Q
    ||||||||| ||||||       ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |    
T  1192882 aaaagcaattgttctctttttttcccattagcgtctcatacaaaaactgtagttttagatgataaacaaaaatagagttagaactcacaagccacacata 1192783  T
Q  423 acattaattataaacattttggagataaatgcacttttgccccttttcatttgag 477  Q
    |||||||||||||| |||||  || ||||||||||||||||||||||||||||||    
T  1192782 acattaattataaatattttttagttaaatgcacttttgccccttttcatttgag 1192728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 65 - 477
Target Start/End: Complemental strand, 1182213 - 1181804
Alignment:
Q  65 gaacaaaataatagtacctcttttcaacatttttcaaccaaaaagaatgcacctcttttcaagaggtaatattaaacttctaaacaaaattaaaattcta 164  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  1182213 gaacaaagtaatagcacctcttttcaacatttttcaacaaaaaagaatgcacctcttttcaagaggtaatatcaaacttctaaacaacattaaaattcta 1182114  T
Q  165 gcctgaaggtaatatttgtttgatctggataagttggtgcataagctggcgacgaatctaaaattgtgttaaaacaaacattctcatcaatcttcttaga 264  Q
    |||||||||||||||||||||||| || | |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1182113 gcctgaaggtaatatttgtttgatgtgcaaattttggtgcataagctggcgatgaatctaaaattgtgttaaaacaaacattctcatcaatcttcttaga 1182014  T
Q  265 gcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaatcgttctcnnnnnnncccattagcgtctcaaag 364  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||   ||       | ||||||||||||| ||    
T  1182013 gcttatgactttcacatccttcaagtcatgccaccaacacttaatttcagcagaaatgcaaaagcaatcg---tctttttttctcattagcgtctcatag 1181917  T
Q  365 aaaaactgtagttttagatgataaacaaaatagagttagaattcacaagccacagaaaacattaattataaacattttggagataaatgcacttttgccc 464  Q
    |||| ||| ||||||||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||||||||||  |||||||||||| |      
T  1181916 aaaatctgcagttttagatgataaacaaaatagagtcagaactcacaagccacatataacattaattataaacattttggagtaaaatgcactttttctt 1181817  T
Q  465 cttttcatttgag 477  Q
    |||||||||||||    
T  1181816 cttttcatttgag 1181804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 133 - 456
Target Start/End: Complemental strand, 896952 - 896621
Alignment:
Q  133 atattaaacttctaaacaaaattaaaattctagcctgaaggtaatatttgtttgatctggataagttggtgcataagctggcgacgaatctaaaattgtg 232  Q
    |||| |||||||||||||  ||||| ||||||| ||||||||||||||||| ||||||  ||||| |||||||||||||||||| |||||||||||||||    
T  896952 atatcaaacttctaaacatcattaatattctagactgaaggtaatatttgtgtgatcttcataagctggtgcataagctggcgatgaatctaaaattgtg 896853  T
Q  233 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaa---tgcaaaagc 329  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  896852 ttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagc 896753  T
Q  330 aatcgttctcnnnnnnncccattagcgtctcaaagaaaaactgtagttttagatgataaacaaaatagagt--tagaattcacaagc--cacagaa---a 422  Q
    |||||||||        ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || || ||||||||  |||| ||   |    
T  896752 aatcgttct--ttttttcccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacacataacata 896655  T
Q  423 acattaattataaacattttggagataaatgcac 456  Q
    |||||||||||||| ||||||||| |||||||||    
T  896654 acattaattataaatattttggagttaaatgcac 896621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 204 - 477
Target Start/End: Complemental strand, 1187296 - 1187026
Alignment:
Q  204 cataagctggcgacgaatctaaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaaca 303  Q
    ||||||||| || ||  |||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  1187296 cataagctgacggcgcctctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaaca 1187197  T
Q  304 cttagtttcagcagaaatgcaaaagcaatcgttctcnnnnnnncccattagcgtctcaaagaaaaactgtagttttagatgataaacaaaatagagttag 403  Q
    ||| || | || |||||||||||||||||||    |       | ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  1187196 cttcgtattagaagaaatgcaaaagcaatcg---cctttttttctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagttag 1187100  T
Q  404 aattcacaagccacagaaaacattaattataaacattttggagataaatgcacttttgccccttttcatttgag 477  Q
    || ||| |||| ||| |||||||||| ||| |||| ||||| | || || || ||||||||| || ||||||||    
T  1187099 aagtcataagctacacaaaacattaagtattaacaatttggggttatatccagttttgcccccttccatttgag 1187026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 241 - 414
Target Start/End: Complemental strand, 1197492 - 1197319
Alignment:
Q  241 aacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaatcgttctcn 340  Q
    |||||||||||| |||||| ||| |||  |||||||||||||||||||| |||||||||||||||| || ||| ||||| |||||||||| |||||||      
T  1197492 aacattctcatcgatcttcatagtgctcgtgactttcacatccttcaagtcatgccaccaacactttgtatcatcagaactgcaaaagcagtcgttcttt 1197393  T
Q  341 nnnnnncccattagcgtctcaaagaaaaactgtagttttagatgataaacaaaatagagttagaattcacaagc 414  Q
          | ||||| ||||||| ||||||||||||||| | || ||| |||||||||||||||||| ||| ||||    
T  1197392 ttttttctcattaacgtctcatagaaaaactgtagttatcgacgattaacaaaatagagttagaagtcaaaagc 1197319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 897011 - 896962
Alignment:
Q  25 ctgtattttataagtgttggaacaaaatacctgggagttagaacaaaata 74  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  897011 ctgttttttataagtgttggaacaaaatacttgtgagttagaacaaaata 896962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 5171649 - 5171560
Alignment:
Q  241 aacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 330  Q
    ||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| || |||  |||||||||||||||    
T  5171649 aacattctcgtcaatcttcatagagcttgtaactttcacatccttcaagccatgccaccaacacttggtatcacaagaaatgcaaaagca 5171560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 330
Target Start/End: Complemental strand, 5195180 - 5195094
Alignment:
Q  244 attctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 330  Q
    ||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||||||||||    
T  5195180 attctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaaaagca 5195094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 1795823 - 1795909
Alignment:
Q  244 attctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 330  Q
    ||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||| |||||    
T  1795823 attctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcacaagca 1795909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 5185182 - 5185100
Alignment:
Q  248 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 330  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||| |||||    
T  5185182 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcacaagca 5185100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 5198910 - 5198992
Alignment:
Q  248 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 330  Q
    ||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||||||||||    
T  5198910 tcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaaaagca 5198992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 248 - 405
Target Start/End: Complemental strand, 5177740 - 5177584
Alignment:
Q  248 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaatcgttctcnnnnnnnc 347  Q
    ||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||| ||||| || | | |            
T  5177740 tcatcaatcttcactgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcacaagcagtcatccccctttcttt 5177641  T
Q  348 ccattagcgtctcaaagaaaaactgtagttttagatgataaacaaaatagagttagaa 405  Q
    |||||||||||||| | |||||||| || || ||||||| ||| ||||||||||||||    
T  5177640 ccattagcgtctcatataaaaactgcagattcagatgattaac-aaatagagttagaa 5177584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 5207181 - 5207113
Alignment:
Q  241 aacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 309  Q
    ||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||| ||||    
T  5207181 aacattctcatcaatcttcatagagctcgtgacttttacatccttcaagccatgccaccaacacctagt 5207113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 6231677 - 6231610
Alignment:
Q  263 gagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 330  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||||||||||    
T  6231677 gagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaaaagca 6231610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 5178874 - 5178792
Alignment:
Q  248 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 330  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||| |||||    
T  5178874 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcacaagca 5178792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 379
Target Start/End: Complemental strand, 8306820 - 8306682
Alignment:
Q  241 aacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaatcgttctcn 340  Q
    ||||||||||||||| ||| | |||| | ||||||||| ||||||||||||||||||||||||||| || |||  |||  |||||||||| ||||  ||     
T  8306820 aacattctcatcaattttcattgagcgtgtgactttcaaatccttcaagccatgccaccaacactttgtatcattagagctgcaaaagcagtcgtcgtct 8306721  T
Q  341 nnnnnncccattagcgtctcaaagaaaaactgtagtttt 379  Q
          | |||||| |||||| |||||||||||||||||    
T  8306720 tttcttctcattagagtctcatagaaaaactgtagtttt 8306682  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 14878124 - 14878180
Alignment:
Q  244 attctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccacca 300  Q
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T  14878124 attcttatcaatattcatagcgctagtgacttttacatccttcaagccatgccacca 14878180  T

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