View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13269_low_3 (Length: 445)
Name: NF13269_low_3
Description: NF13269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13269_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 2137573 - 2137154
Alignment:
| Q |
17 |
aaaactatgacggccaaattggttatgttcaatttgatgtaatagatagatagatgcatacattaacaattgcatttggatttagagggttgttcctcct |
116 |
Q |
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| T |
2137573 |
aaaactatgacgaccaaattggttatgttcaatttgatgtaatagatagatagatgcatacattaacaattgcatttggatttagagggttgttcctcct |
2137474 |
T |
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| Q |
117 |
tgtccttggttccaaatgatgcaaccctcccacccgtttcattcatggcttgatttaacatgagccttagagcgtgattttggaccttctgtgtatgagt |
216 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2137473 |
tgtccttggttccaaatgatgcaaacgtcccacccgtttcattcatggcttgatttaacacgagccttagagcgtgattttggaccttctgtgtatgagt |
2137374 |
T |
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| Q |
217 |
gccttagagaaagctatgttgtttaagcttcaccaaaactggttctattagtgatcaatgatgctgccggtagtttacggctctataaaataaagttgtt |
316 |
Q |
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| T |
2137373 |
gccttagagaaagctatgttgtttaagcttcaccaaaactggttctattagtgatcaatgatgctgcgggtagtttacggctctataaaataaaattgtt |
2137274 |
T |
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| Q |
317 |
attgcatttactattaaatcaagctttacatagtgcattgaatcatgtttcagcaaatgtaatacaaccctaagaataacactaattaggattttcgtta |
416 |
Q |
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| T |
2137273 |
attgcatttactattaaatcaagctttacatagtgcattgaatcatggttcagcaaatgtaacacaaccctgagaataacactaattaggattttcggta |
2137174 |
T |
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| Q |
417 |
ttttcttctattagtataat |
436 |
Q |
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| T |
2137173 |
ttttcttctattagtataat |
2137154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 98 - 274
Target Start/End: Complemental strand, 2128193 - 2128017
Alignment:
| Q |
98 |
ttagagggttgttcctccttgtccttggttccaaatgatgcaaccctcccacccgtttcattcatggcttgatttaacatgagccttagagcgtgatttt |
197 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2128193 |
ttagagggttgttcctccttatccttggttccaaatgatgcaaacgtcccacccgtttcattcatggcttgatttaacacgagccttagagcgtgatttt |
2128094 |
T |
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| Q |
198 |
ggaccttctgtgtatgagtgccttagagaaagctatgttgtttaagcttcaccaaaactggttctattagtgatcaa |
274 |
Q |
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| T |
2128093 |
ggaccttctttgtatgagtgccctagagaaagctatgttgtttaagcttcaccaaaactgattctattagtgatcaa |
2128017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 2081176 - 2081273
Alignment:
| Q |
119 |
tccttggttccaaatgatgcaaccc-tcccacccgtttcattcatggcttgatttaacatgagccttagagcgtgattttggaccttctgtgtatgag |
215 |
Q |
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|||||||||||||||||||||| |||||||| ||||||| | || |||||| ||| |||| ||||||| ||||||||||||||||||||||||| |
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| T |
2081176 |
tccttggttccaaatgatgcaaaatgtcccacccatttcattaacagcgtgattttacacgagcgttagagcttgattttggaccttctgtgtatgag |
2081273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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