View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13269_low_4 (Length: 301)
Name: NF13269_low_4
Description: NF13269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13269_low_4 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 11395824 - 11396110
Alignment:
| Q |
15 |
agatgaacaatgcatccaatggatttcaagtctcgcaacatcgatcgcaaccatcgcatcgagatatagagtgagaaacagcgtatttgannnnnnnncg |
114 |
Q |
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| T |
11395824 |
agatgaacaatgcatccaatggatttcaagcctcgcaacatcgatcgcaaccgtcgcatcgagatatagagtgagaaacagcatatttgattttttttcg |
11395923 |
T |
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| Q |
115 |
agatttgaattttcaagtttgaaaatatatgcaaccgttttagcttattcattaacttcgtgtttctgaaatgaatttcacgaattctgtataacgctat |
214 |
Q |
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| T |
11395924 |
agatttgaattttcaagtttgaaaatatatgcaaccgttttagcttattcattaacttcgtgtttctgaattgaatttcacgaattctgtataaagctat |
11396023 |
T |
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| Q |
215 |
gttcgaatcatgtgaaattataagatctagaaacgaattatgtgtatcagttcaaattcatgcttatttatagtcgaatcatgtgtt |
301 |
Q |
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| T |
11396024 |
gttcgaatcatgtgaaattataagatctagaaacgaattatgtgtatcagttcaaattcattcttatttatagtcgaatcatgtgtt |
11396110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 11395667 - 11395708
Alignment:
| Q |
206 |
taacgctatgttcgaatcatgtgaaattataagatctagaaa |
247 |
Q |
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| T |
11395667 |
taacgctatgttcgaatcatgtgaaattaatggatctagaaa |
11395708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 12848822 - 12848858
Alignment:
| Q |
198 |
attctgtataacgctatgttcgaatcatgtgaaattat |
235 |
Q |
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| T |
12848822 |
attctgtataacgctatg-tcgaatcatgtgaaattat |
12848858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 12849110 - 12849142
Alignment:
| Q |
198 |
attctgtataacgctatgttcgaatcatgtgaa |
230 |
Q |
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| T |
12849110 |
attctgcataacgctatgttcgaatcatgtgaa |
12849142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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