View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13269_low_6 (Length: 246)

Name: NF13269_low_6
Description: NF13269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13269_low_6
NF13269_low_6
[»] chr2 (3 HSPs)
chr2 (136-229)||(7026834-7026927)
chr2 (136-229)||(14688725-14688818)
chr2 (136-229)||(35297198-35297291)
[»] scaffold0015 (1 HSPs)
scaffold0015 (136-229)||(14134-14227)
[»] chr8 (2 HSPs)
chr8 (136-229)||(29259339-29259432)
chr8 (136-229)||(13821489-13821580)
[»] chr6 (4 HSPs)
chr6 (136-229)||(16498179-16498272)
chr6 (136-229)||(9756850-9756943)
chr6 (175-216)||(28493819-28493860)
chr6 (175-216)||(29806228-29806269)
[»] chr5 (1 HSPs)
chr5 (136-229)||(31112065-31112158)
[»] chr3 (3 HSPs)
chr3 (136-229)||(49147659-49147752)
chr3 (135-216)||(43367782-43367863)
chr3 (147-225)||(4325877-4325958)
[»] chr1 (2 HSPs)
chr1 (136-228)||(44094017-44094109)
chr1 (136-229)||(45516372-45516465)
[»] chr7 (1 HSPs)
chr7 (136-229)||(42128571-42128664)
[»] chr4 (1 HSPs)
chr4 (158-214)||(19149843-19149899)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 7026834 - 7026927
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7026834 gaggctagcgcctcataaagaggactcctaattcatccgtcctaagcagaggcagcaggtcctctggaggagaagagtggagagtcaattcaac 7026927  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 14688818 - 14688725
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  14688818 gaggctagcgcctcataaagaggactcctaattcatccgtcctaaccagaggcagcaggtcctctagaggagaagagtggagagtcaattcaac 14688725  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 35297291 - 35297198
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    ||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  35297291 gaggctagcgcttcataaagagaactcctaattcatccgtcctaagcagaggcagcaggtcctctgaaggagaagagtggagagtcaattcaac 35297198  T

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Target: scaffold0015 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 14227 - 14134
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  14227 gaggctagcgcctcataaagaggactcctaattcatccgtcctaagcagaggctgcatgtcctttggaggagaagagtggagagtcaattcaac 14134  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 29259432 - 29259339
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  29259432 gaggctagcgcctcataaagaggactcctaattcatccgtcctaagcagaggcggcatgtcctttggaggagaagagtggagagtcaattcaac 29259339  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 13821580 - 13821489
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||| |||||||   ||||||||||||||||||||||||||    
T  13821580 gaggctagcgtctcataaagatgactcctaattcattcgtcctaagcagaggcagcaggtcctct--cggagaagagtggagagtcaattcaac 13821489  T

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Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 16498179 - 16498272
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    |||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  16498179 gaggctagcgcctcataaagaggactcctaattcatctgtcctaagcggaggcagcaggtcctctggaggagaagagtggagagtcaattcaac 16498272  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 9756850 - 9756943
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    ||||||| || |||||||||||||||||||||||| |||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||    
T  9756850 gaggctatcgcctcataaagaggactcctaattcatccgtcctaagaagaggcagcatgtcctatgaaggagaagagtggagagtcaattcaac 9756943  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 28493860 - 28493819
Alignment:
Q  175 tcctaagcagaggcagcaagtcctctggaggagaagagtgga 216  Q
    |||||||||||||||||| || ||||||||| ||||||||||    
T  28493860 tcctaagcagaggcagcaggttctctggaggtgaagagtgga 28493819  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 29806269 - 29806228
Alignment:
Q  175 tcctaagcagaggcagcaagtcctctggaggagaagagtgga 216  Q
    |||||||||||||||||| || ||||||||| ||||||||||    
T  29806269 tcctaagcagaggcagcaggttctctggaggtgaagagtgga 29806228  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 31112065 - 31112158
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  31112065 gaggctagcgcctcataaagaggactcctaattcatccgtcctaagcagcggcagcaggtcctctggaggagaatagtggagagtcaattcaac 31112158  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 49147659 - 49147752
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    |||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  49147659 gaggctagtgcctcataaagaggactcctaattcatccgtcctaagcagaggcagcaggtcctctggaggagaagattggagagtcaattcaac 49147752  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 43367863 - 43367782
Alignment:
Q  135 cgaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtgga 216  Q
    ||||||||||| |||||||| |  ||||||| |||| |||||||||||||||| |||| ||||| |||||| ||||||||||    
T  43367863 cgaggctagcgcctcataaaaacaactcctagttcatccgtcctaagcagaggtagcaggtcctttggaggtgaagagtgga 43367782  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 4325958 - 4325877
Alignment:
Q  147 ctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaag---agtggagagtcaatt 225  Q
    ||||||||||||||||||||||||  | ||||||| |||| |||||| |||||||||| |||||   |||||||||||||||    
T  4325958 ctcataaagaggactcctaattcattcatcctaagtagagacagcaaatcctctggagaagaagagtagtggagagtcaatt 4325877  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 44094109 - 44094017
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaa 228  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  44094109 gaggctagcgcctcataaagaggactcctaaatcatccgtcctaagcagaggcagcaggtcctctggaggagaagagtggaaagtcaattcaa 44094017  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 45516372 - 45516465
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  45516372 gaggctagcgcctcataaaaaggactcctaattcatccgtcctaagcagaggcagtaggtcctctcgaggagaagagtggagagtcaattcaac 45516465  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 42128664 - 42128571
Alignment:
Q  136 gaggctagcgtctcataaagaggactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtggagagtcaattcaac 229  Q
    |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  42128664 gaggctagcgcctcataaagaggactcctaattcatctgtcctaagcagaggcagcaggtcctctggaagagaagagtggagggtcaattcaac 42128571  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 19149843 - 19149899
Alignment:
Q  158 gactcctaattcacccgtcctaagcagaggcagcaagtcctctggaggagaagagtg 214  Q
    ||||||||||||| | ||||| |||||||||| || |||||| ||||||||||||||    
T  19149843 gactcctaattcatctgtccttagcagaggcaacaggtcctccggaggagaagagtg 19149899  T

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