View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326R-Insertion-11 (Length: 603)

Name: NF1326R-Insertion-11
Description: NF1326R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326R-Insertion-11
NF1326R-Insertion-11
[»] chr8 (1 HSPs)
chr8 (61-571)||(18306460-18306966)
[»] chr3 (6 HSPs)
chr3 (415-603)||(41753347-41753524)
chr3 (531-601)||(41750128-41750198)
chr3 (252-368)||(41753179-41753294)
chr3 (534-603)||(41744679-41744748)
chr3 (188-237)||(33807165-33807214)
chr3 (272-321)||(41748661-41748710)
[»] chr1 (2 HSPs)
chr1 (534-603)||(29589979-29590048)
chr1 (192-242)||(46601408-46601458)
[»] chr6 (2 HSPs)
chr6 (189-248)||(7052411-7052469)
chr6 (188-237)||(3608071-3608120)
[»] chr7 (2 HSPs)
chr7 (188-237)||(728032-728081)
chr7 (188-237)||(39218884-39218933)


Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 61 - 571
Target Start/End: Original strand, 18306460 - 18306966
Alignment:
Q  61 acaccaacaatccatacttagtggagttaaagagttttctttgattttcttttcatcgtgtgtcaattgtgttgcaccatatagcaaaataaccttgtgc 160  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  18306460 acaccaacaatccatacttagtggagttaaagagttttctttaattttcttttcatcgtgtgtcaattgtgttgcaccatataacaaaataacctcgtgc 18306559  T
Q  161 ttggaattaata--aggagccaaatgcttggtgtattcaattaggattttaaaggaaaatatttatttaaaaatgtcttcaagaattttactaaaagtga 258  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  18306560 ttggaattaatagaaggagccaaatgtttggtgtattcaattaggattttaaaggacaatatttgtttaaaaatgtcttcaagaattttactaaaagtga 18306659  T
Q  259 caaaatgaattcttactcataaacttctcaaaatacatttgctacactcaaattagtctcctactaaaatatag-tttaaaagtatctactactcaattt 357  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18306660 caaaatgaattcttactcataaacttctcaaaatacacttgcttcactcaaattagtctcctactaaaatatagttttaaaagtatctactactcaattt 18306759  T
Q  358 gatcccaatcatnnnnnnnnnnnnnnnnnnnnnncattaaaatcaagtagtaacatatcaatgagtccttttcactatacgatgtgtgaggcttttcttt 457  Q
    ||||||||||||                      ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  18306760 gatcccaatcat--aagaagaagaagaaaaaaaacattaaaatcaagtagtaacatagcaatgagtcctcttcactatacgatgtgtgagtcttttcttt 18306857  T
Q  458 acattcatttcaagcaaaagaggttgaacgttcattcaaggattgagggtaattaattaatcttctcttacactatttagctttgaaacatgcttgcctc 557  Q
    |||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  18306858 acattcatttcaagcaaaagaggttgaac-----ttcaaggattaagggtaattaattaatcttctcttacactatttagctttaaaacattcttgcctc 18306952  T
Q  558 agcttctcaatttc 571  Q
    |||||||| |||||    
T  18306953 agcttctcgatttc 18306966  T

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Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 415 - 603
Target Start/End: Original strand, 41753347 - 41753524
Alignment:
Q  415 tcaatgagtccttttcactatacgatgtgtgaggcttttctttacattcatttcaagcaaaagaggttgaacgttcattcaaggattgagggtaattaat 514  Q
    |||||||||||||  ||||||||  |||||||||||||| ||||||||||||||||||||||||||| |||      |||||||||||||||    ||||    
T  41753347 tcaatgagtcctt--cactatactctgtgtgaggcttttttttacattcatttcaagcaaaagaggtagaa-----gttcaaggattgaggg----taat 41753435  T
Q  515 taatcttctcttacactatttagctttgaaacatgcttgcctcagcttctcaatttcttcattcaattccatttcaggaagtttctcca 603  Q
    |||||||||||| |  || |||||| | |||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||    
T  41753436 taatcttctcttgctatacttagctctaaaacatgcttgcctcagctttttgatctcttcattcaattccatttcaggaagtttctcca 41753524  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 601
Target Start/End: Original strand, 41750128 - 41750198
Alignment:
Q  531 tatttagctttgaaacatgcttgcctcagcttctcaatttcttcattcaattccatttcaggaagtttctc 601  Q
    ||||||||||| | |||||| | |||||||||||  |||||||| ||||||||||||||||||||||||||    
T  41750128 tatttagctttaatacatgcattcctcagcttcttgatttcttcgttcaattccatttcaggaagtttctc 41750198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 368
Target Start/End: Original strand, 41753179 - 41753294
Alignment:
Q  252 aaagtgacaaaatgaattcttactcataaacttctcaaaatacatttgctacactcaaattagtctcctact--aaaatatagtttaaaagtatctacta 349  Q
    |||||||||||||| |||| ||||||  |||| |||||||||||| |||| || ||||||||||| |||| |  || |||||| |  || ||||||||||    
T  41753179 aaagtgacaaaatggattcctactca--aactcctcaaaatacatgtgcttcagtcaaattagtc-cctaatagaatatatagctctaaggtatctacta 41753275  T
Q  350 ctcaatttgatcccaatca 368  Q
    ||||||||||||| |||||    
T  41753276 ctcaatttgatcctaatca 41753294  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 603
Target Start/End: Original strand, 41744679 - 41744748
Alignment:
Q  534 ttagctttgaaacatgcttgcctcagcttctcaatttcttcattcaattccatttcaggaagtttctcca 603  Q
    |||||||| || |||||||||||||||||||  ||||| |||||||| | |||| | |||||||||||||    
T  41744679 ttagctttaaagcatgcttgcctcagcttcttgatttcatcattcaaatgcattcccggaagtttctcca 41744748  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 33807165 - 33807214
Alignment:
Q  188 ggtgtattcaattaggattttaaaggaaaatatttatttaaaaatgtctt 237  Q
    ||||||||  ||||||||||||||||| ||| |||||||||||| |||||    
T  33807165 ggtgtattggattaggattttaaaggacaatttttatttaaaaaagtctt 33807214  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 41748661 - 41748710
Alignment:
Q  272 tactcataaacttctcaaaatacatttgctacactcaaattagtctccta 321  Q
    |||||||||||| |||||||||||| |||| || |||||||||| |||||    
T  41748661 tactcataaactcctcaaaatacatgtgcttcagtcaaattagtttccta 41748710  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 603
Target Start/End: Complemental strand, 29590048 - 29589979
Alignment:
Q  534 ttagctttgaaacatgcttgcctcagcttctcaatttcttcattcaattccatttcaggaagtttctcca 603  Q
    |||||||| || |||||||||||||||||||  ||||| |||||||| |||||| | |||||||||||||    
T  29590048 ttagctttaaagcatgcttgcctcagcttcttgatttcgtcattcaaatccattcccggaagtttctcca 29589979  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 46601408 - 46601458
Alignment:
Q  192 tattcaattaggattttaaaggaaaatatttatttaaaaatgtcttcaaga 242  Q
    |||||||||||||||||||| || ||| |||||||||||| ||||| ||||    
T  46601408 tattcaattaggattttaaaagacaatttttatttaaaaaagtcttgaaga 46601458  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 7052469 - 7052411
Alignment:
Q  189 gtgtattcaattaggattttaaaggaaaatatttatttaaaaatgtcttcaagaatttta 248  Q
    ||||||| |||||||||||||||||| ||| ||| |||||||| ||||| ||||||||||    
T  7052469 gtgtattgaattaggattttaaaggacaatttttgtttaaaaaagtctt-aagaatttta 7052411  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 3608120 - 3608071
Alignment:
Q  188 ggtgtattcaattaggattttaaaggaaaatatttatttaaaaatgtctt 237  Q
    |||||||| |||||||||||||||||| ||| ||| |||||||| |||||    
T  3608120 ggtgtattgaattaggattttaaaggataatttttgtttaaaaaagtctt 3608071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 728081 - 728032
Alignment:
Q  188 ggtgtattcaattaggattttaaaggaaaatatttatttaaaaatgtctt 237  Q
    |||||||| |||||||||||||||||| ||| ||| |||||||| |||||    
T  728081 ggtgtattgaattaggattttaaaggagaatttttgtttaaaaaagtctt 728032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 39218884 - 39218933
Alignment:
Q  188 ggtgtattcaattaggattttaaaggaaaatatttatttaaaaatgtctt 237  Q
    |||||||| |||||||||||||||||| ||| ||| |||||||| |||||    
T  39218884 ggtgtattgaattaggattttaaaggacaatttttgtttaaaaaagtctt 39218933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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