View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326R-Insertion-13 (Length: 701)
Name: NF1326R-Insertion-13
Description: NF1326R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326R-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 9 - 674
Target Start/End: Original strand, 42967877 - 42968530
Alignment:
| Q |
9 |
ttttgataagctacaaattgattgtgaattctttactgcaccaatcgaaatgaattataaatagttcaaattcaattcatttatcttaccaactcaattt |
108 |
Q |
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| T |
42967877 |
ttttgataagctacaaattgattgtgaattctttactgcaccaaacgaaatgaattacacatagttcaaattcaattcatttatcttaccaactcaattt |
42967976 |
T |
|
| Q |
109 |
tcagttcatatttccgtgaatttgatattgttcttgtcttatttttatgtctactgaaatcctcaagtatttatttggttatttattcaatcttgcatta |
208 |
Q |
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| T |
42967977 |
tcagttcatattcccgtgaatt-gatattgttctagtcttatttttatgtctactgaaatcctcaagtatttatttggttatttattcaatcttgcatta |
42968075 |
T |
|
| Q |
209 |
ttccgtaagaacagaatagcaagtggaatcagggtgcgtattctgataatcctaattccattgcataattcaacctactttatgtatttaaattaaatta |
308 |
Q |
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| T |
42968076 |
ttccgtaagaacagaatagcaagtgg-----------------tgataatcctaatcccattgcataattcaacctactttatgtatttaaattaaatta |
42968158 |
T |
|
| Q |
309 |
gaaaaaacatacagaaatgagaaaaggcaaaataaagcaattgtctgctatgaatatgatatttgagataaagcaaaattaagctttgtacaaaaa-gca |
407 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
42968159 |
gaaaaaacatacagaaatgagataaggcaaaataaagcaattgtctgctatgaatatgatatttgagataaagcaaaattaagttttgtacaaaaaagca |
42968258 |
T |
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| Q |
408 |
gccaaactactaccactaggaagctgatgatgctggaaagaaacaaaggccttgagacattcagttttatgtccaataccatacactgtggaactagtga |
507 |
Q |
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| T |
42968259 |
gccaaactactactactaggaagctgatgatgctggaaagaaacaaaggccttgagacattcagttttatgtccaataccatacactgtggaactagtga |
42968358 |
T |
|
| Q |
508 |
attgtc-----acaatccacggagcacccacccaacccaagcatggatgattgagcatatctgctaataaagctgttcttttctgtcatgcaaccatctc |
602 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42968359 |
attgtcatgtcacaatccatggagcacccacccaacccaagcatggatggttgagcatatctgctaataaagctgttctttcctgtcatgcaaccatctc |
42968458 |
T |
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| Q |
603 |
caactgttgaaaaaagcacataacagtcagtcatattgagcatcttgtgtatgatttatttttaccatttct |
674 |
Q |
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| T |
42968459 |
caactgttgaaaaaagcacataacaatcagtcatattgagcatcttgtgtatgatttatttttaccatttct |
42968530 |
T |
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