View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1326R-Insertion-14 (Length: 759)
Name: NF1326R-Insertion-14
Description: NF1326R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326R-Insertion-14 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 6e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 123 - 346
Target Start/End: Complemental strand, 44989749 - 44989526
Alignment:
| Q |
123 |
aaaacaatatgactgacttaatttataagatatnnnnnnngtagatttagataagatakaattgcttgtatcttttatcttgactatgacataaaccata |
222 |
Q |
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| T |
44989749 |
aaaacaatatgactgacttaatttataagatataaaaaaagttgatttagataagatataattgcttctatcttttatcttgactatgacataaaccata |
44989650 |
T |
|
| Q |
223 |
acgtgacttaatttaaaagtagaatcgtatttgattgaatgtacaatttttctgttctatatggtggaacacactttcagcactcgttacatgtttgggg |
322 |
Q |
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|||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44989649 |
acgttacttaatttaaaaggataatcgtatttgattgaatgtacaatttttctattctatatggtgttacacactttcagcactcgttacatgtttgggg |
44989550 |
T |
|
| Q |
323 |
gagcaacagagcacctatacatga |
346 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
44989549 |
cagcaacagagcacctatacatga |
44989526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 44989800 - 44989747
Alignment:
| Q |
29 |
aactgagactccctaaagacacaaagtcctagagcaatctcaccgaatagcaaa |
82 |
Q |
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| T |
44989800 |
aactgagactccctaaagacacaaagtcctagagcaatctcaccgaatagcaaa |
44989747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 401 - 435
Target Start/End: Complemental strand, 44989529 - 44989495
Alignment:
| Q |
401 |
atgaatttgtaccctttaattatttgaaagtattc |
435 |
Q |
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| T |
44989529 |
atgaatttgtaccctttaattatttgaaagtattc |
44989495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 469 - 576
Target Start/End: Original strand, 16570521 - 16570627
Alignment:
| Q |
469 |
taatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataata |
568 |
Q |
| |
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||||||| |||||||||||| ||||||| ||||||||| | ||||||| || |||||||||| || ||||| ||| ||||| |||||||||||||| |
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| T |
16570521 |
taatcaaagttctctaaaaatatatttttaatagaattaatcaaagtgaatt-aaaaagaaatatatctatatggtaccaactaataagtaaaaataata |
16570619 |
T |
|
| Q |
569 |
aatttgat |
576 |
Q |
| |
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| |||||| |
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| T |
16570620 |
attttgat |
16570627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 574
Target Start/End: Original strand, 26835618 - 26835723
Alignment:
| Q |
468 |
ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat |
567 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||||| | |||| | ||||||| ||||| |||||||| ||| ||||||| ||||||||||||| |
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| T |
26835618 |
ataatcaaagttctctaaaaatatattttcaatagaattaataaaagaaaattaaaaa-gaaatatatttatattgtactaactattaagtaaaaataat |
26835716 |
T |
|
| Q |
568 |
aaatttg |
574 |
Q |
| |
|
|| |||| |
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|
| T |
26835717 |
aattttg |
26835723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 574
Target Start/End: Original strand, 13580397 - 13580487
Alignment:
| Q |
483 |
taaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg |
574 |
Q |
| |
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||||||| |||||| ||||||||| | |||| || ||||||| ||||| ||||||||| || ||||||| ||||||||||||||| |||| |
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| T |
13580397 |
taaaaatatattttcaatagaattaatcaaagcgaattaaaaa-gaaatatatttatataatactaactattaagtaaaaataataattttg |
13580487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 569
Target Start/End: Original strand, 36071581 - 36071681
Alignment:
| Q |
468 |
ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat |
567 |
Q |
| |
|
|||||||| |||||||||||| |||||| || |||||| | |||| | ||||||| ||||| || ||||||||| ||||||||||||||||||||| |
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| T |
36071581 |
ataatcaaagttctctaaaaatatattttcaattgaattaatcaaagaaaattaaaaa-gaaatatatctatatagtactaactatcaagtaaaaataat |
36071679 |
T |
|
| Q |
568 |
aa |
569 |
Q |
| |
|
|| |
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|
| T |
36071680 |
aa |
36071681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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