View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326R-Insertion-15 (Length: 796)

Name: NF1326R-Insertion-15
Description: NF1326R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326R-Insertion-15
NF1326R-Insertion-15
[»] chr7 (19 HSPs)
chr7 (8-660)||(41566146-41566781)
chr7 (675-796)||(33081816-33081938)
chr7 (9-142)||(41434908-41435037)
chr7 (558-662)||(41435538-41435642)
chr7 (396-561)||(41435354-41435517)
chr7 (674-759)||(46912927-46913012)
chr7 (182-349)||(41435187-41435338)
chr7 (683-761)||(31670591-31670669)
chr7 (438-571)||(41574404-41574540)
chr7 (674-776)||(46357785-46357887)
chr7 (670-741)||(4519742-4519813)
chr7 (672-743)||(36616866-36616937)
chr7 (672-743)||(46457681-46457752)
chr7 (672-743)||(28998311-28998382)
chr7 (675-741)||(43998120-43998186)
chr7 (672-741)||(42896850-42896919)
chr7 (684-759)||(18104498-18104573)
chr7 (676-743)||(23041601-23041670)
chr7 (672-729)||(34643966-34644023)
[»] chr5 (10 HSPs)
chr5 (672-796)||(13475555-13475680)
chr5 (674-796)||(971737-971859)
chr5 (674-759)||(25981440-25981525)
chr5 (678-759)||(3059273-3059354)
chr5 (672-773)||(33798692-33798793)
chr5 (674-743)||(34225995-34226064)
chr5 (686-760)||(11773292-11773366)
chr5 (675-776)||(26326944-26327045)
chr5 (672-773)||(33727413-33727514)
chr5 (674-761)||(39421265-39421354)
[»] chr8 (5 HSPs)
chr8 (672-796)||(7351394-7351519)
chr8 (671-774)||(35702105-35702208)
chr8 (674-759)||(29246835-29246920)
chr8 (672-743)||(14443053-14443124)
chr8 (674-727)||(16428095-16428148)
[»] chr4 (6 HSPs)
chr4 (672-796)||(47286605-47286730)
chr4 (674-759)||(2917620-2917705)
chr4 (672-743)||(15545053-15545124)
chr4 (672-743)||(4940061-4940132)
chr4 (672-761)||(18764646-18764735)
chr4 (759-796)||(35030305-35030343)
[»] chr6 (4 HSPs)
chr6 (676-796)||(13850693-13850814)
chr6 (672-743)||(6174375-6174446)
chr6 (672-759)||(595723-595810)
chr6 (674-741)||(843657-843724)
[»] chr3 (7 HSPs)
chr3 (672-796)||(27237344-27237469)
chr3 (674-759)||(50386140-50386225)
chr3 (674-759)||(497692-497777)
chr3 (672-743)||(22418844-22418915)
chr3 (677-740)||(3541699-3541762)
chr3 (672-743)||(49430480-49430551)
chr3 (674-743)||(7147179-7147248)
[»] chr1 (7 HSPs)
chr1 (674-779)||(32942249-32942354)
chr1 (674-759)||(2123582-2123667)
chr1 (674-759)||(38741288-38741373)
chr1 (674-759)||(33403738-33403823)
chr1 (674-759)||(50158893-50158978)
chr1 (672-759)||(11943666-11943753)
chr1 (672-743)||(37188202-37188273)
[»] chr2 (2 HSPs)
chr2 (674-759)||(918011-918096)
chr2 (674-774)||(41911764-41911864)


Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 8 - 660
Target Start/End: Complemental strand, 41566781 - 41566146
Alignment:
Q  8 aagtacaagaagctgctaatgctgttccggactgatcaagttctcatgccgcccttatcatactcaattctggaacatacaggttatcttcctttaatgt 107  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41566781 aagtacaagaagctgttaatgctgttccggactgatcaagttctcatgccacccttatcatactcaattctggaacatacaggttatcttcctttaatgt 41566682  T
Q  108 ttttattggtacatatttcttggtgtttgattaatgatgaattttataactatacataaatgacacaattagacaaattcaatcttatgtatatataatg 207  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41566681 ttttattgatacatatttcttggtgtttgattaatgatgaattttataactatacataaatgacacaattagacaaattcaatcgtatgtatatataatg 41566582  T
Q  208 tgcataaattttaagaagaaatattatgatgatgaaatatgattagaatattataaacaacttatacaaaaatattgaactttatacaaaaaagatatta 307  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41566581 tgcataaactttaagaagaaatattatgatgatgaaatatgattagaatattataaacaacttatacaaaaatattgaactttatacaaaaatgatatta 41566482  T
Q  308 aactttatacatttatatgctatttcactaaacaaaaatattaaaccccaaccaccnnnnnnnnnnnnnnngatgaatcttagggatcgagaaggtaatg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||               |||||||||||||    ||||||||||||    
T  41566481 aactttatacatttatatgctatttcactaaacaaaaatattaaaccccggccacc---aaaaaaaaattagatgaatcttagg----gagaaggtaatg 41566389  T
Q  408 gttaacgcc-aaaaaacaaacttgatattgcgtcaagggtatctgaatacagtcatagaatggaatgacaatggaaattccacaggaacattcgatagct 506  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||    
T  41566388 gttaacgccaaaaaaacaaacttgatactgcgtcaagggtatctgaatacagtcatag-----------aatggaaattccacaggaacattcgatagct 41566300  T
Q  507 actcgtttggtgtatttgcctctgagttcattgcttacaacgttagctttaaggtgagcaatttcgtttgttcaatattaacgtgttgctcttgttgttt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41566299 actcgtttggtgtatttgcctctgagttcattgcttacaacgttagctttaaggtgagcaatttcgtttgttcaatattaacgtgttgctcttgttgttt 41566200  T
Q  607 atggatattcatattaatttacataacatatagtaagttcttagttaattaaca 660  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41566199 atggatattcatattaatttacataacatatagtaagatcttagttaattaaca 41566146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 675 - 796
Target Start/End: Complemental strand, 33081938 - 33081816
Alignment:
Q  675 ggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaaatg 774  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33081938 ggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaaatg 33081839  T
Q  775 gtata-gtggaagcattttacca 796  Q
    ||||| |||||||||||||||||    
T  33081838 gtataggtggaagcattttacca 33081816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 41434908 - 41435037
Alignment:
Q  9 agtacaagaagctgctaatgctgttccggactgatcaagttctcatgccgcccttatcatactcaattctggaacatacaggttatcttcctttaatgtt 108  Q
    |||||||||||||| ||||||||||||||||| ||   ||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||    
T  41434908 agtacaagaagctgttaatgctgttccggactcat---gttctcatgccacccttatcatactcaattctggaacatacaggttatctt-ctcttatgtt 41435003  T
Q  109 tttattggtacatatttcttggtgtttgattaat 142  Q
    ||||||| |||||||| |||||| ||||||||||    
T  41435004 tttattgatacatattacttggtatttgattaat 41435037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 558 - 662
Target Start/End: Original strand, 41435538 - 41435642
Alignment:
Q  558 aggtgagcaatttcgtttgttcaatattaacgtgttgctcttgttgtttatggatattcatattaatttacataacatatagtaagttcttagttaatta 657  Q
    |||||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  41435538 aggtgagcaatttcgtttgttcaatattaatgtgtttttcttgttatttatggatattcatattaatttgcataacatatagtaagatcttagtcaatta 41435637  T
Q  658 acaca 662  Q
    |||||    
T  41435638 acaca 41435642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 396 - 561
Target Start/End: Original strand, 41435354 - 41435517
Alignment:
Q  396 gagaaggtaatggttaacgccaaaaaa-caaacttgatattgcgtcaagggtatctgaatacagtcatagaatggaatgacaatggaaattccacaggaa 494  Q
    |||||||||||| |||| ||||||||| ||||||||||| | |    | ||||| | | ||||||||||||||||||||| | || ||||||||| | ||    
T  41435354 gagaaggtaatgattaatgccaaaaaaacaaacttgatactac----aaggtatatcattacagtcatagaatggaatgatattgcaaattccacggtaa 41435449  T
Q  495 cattcgatagctactcgttt-ggtgtatttgcctctgagttcattgcttacaacgttagctttaaggt 561  Q
    ||| |||||||||||| ||| ||||||||||| ||| ||||||||||||||||| |||| ||||||||    
T  41435450 catacgatagctactccttttggtgtatttgcttctaagttcattgcttacaacattagttttaaggt 41435517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 674 - 759
Target Start/End: Original strand, 46912927 - 46913012
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||||  ||||||||||||||    
T  46912927 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaa 46913012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 182 - 349
Target Start/End: Original strand, 41435187 - 41435338
Alignment:
Q  182 aaattcaatcttatgtatatataatgtgcataaattttaagaagaaatattatgatgatgaaatatgattagaatattataaacaacttatacaaaaata 281  Q
    |||||||||| ||||||||||   ||||||||||||||||||     | ||||||||||||||||||||||||||||||||||||||||| |||| |       
T  41435187 aaattcaatcgtatgtatataaggtgtgcataaattttaagatttttt-ttatgatgatgaaatatgattagaatattataaacaactta-acaaca--- 41435281  T
Q  282 ttgaactttatacaaaaaagatattaaactttatacatttatatgctatttcactaaacaaaaatatt 349  Q
            |||| |||||   |||||||||||||||||||||| ||||||||||||||||||||||||    
T  41435282 --------tatataaaaa---tattaaactttatacatttatacgctatttcactaaacaaaaatatt 41435338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 683 - 761
Target Start/End: Complemental strand, 31670669 - 31670591
Alignment:
Q  683 cagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaaca 761  Q
    |||||||||||||||||||||| ||||| | |||| ||||||||| |||||||||||||||  ||||| ||||||||||    
T  31670669 cagacatttgatattggtgtgataaaatttccaaaacaactatatatattaacaaagtaaaatattgacaccttaaaca 31670591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 571
Target Start/End: Complemental strand, 41574540 - 41574404
Alignment:
Q  438 gtcaagggtatctgaatacagtcatagaatggaatgacaatggaaattccacagga---acattcgatagctactcgtttggtgtatttgcctctgagtt 534  Q
    ||||||| |||||  ||||| |||||||||||||||||| || ||||||||| |||   || | | |||||||||||||||  || ||||| ||  ||||    
T  41574540 gtcaaggctatcttgatacaatcatagaatggaatgacactgcaaattccactggagggacttcctatagctactcgtttgcggtttttgcttcaaagtt 41574441  T
Q  535 cattgcttacaacgttagctttaaggtgagcaatttc 571  Q
    || |||||||||| ||||||||||||| |||||||||    
T  41574440 cactgcttacaacattagctttaaggtaagcaatttc 41574404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 674 - 776
Target Start/End: Original strand, 46357785 - 46357887
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaaat 773  Q
    ||||||||| |||||||||||||||||||| |||||  ||||||  |||||||| ||||||||||||| |  ||||| || ||||||| |||||| ||||    
T  46357785 gggcggatctagacatttgatattggtgtggcaaaactttcaaagaaactatatatattaacaaagtagaccattgacactttaaacagtatagcaaaat 46357884  T
Q  774 ggt 776  Q
    |||    
T  46357885 ggt 46357887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 670 - 741
Target Start/End: Complemental strand, 4519813 - 4519742
Alignment:
Q  670 ataggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagta 741  Q
    ||||||| ||||| ||||||||||||||||||||||||||  | |||| ||||||||| |||||||||||||    
T  4519813 ataggggtggatctagacatttgatattggtgtgacaaaacttgcaaagcaactatatatattaacaaagta 4519742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 672 - 743
Target Start/End: Original strand, 36616866 - 36616937
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||||| ||||||||||||||||||||  ||||| ||||||  |||||||| |||||||||||||||    
T  36616866 aggggcggatctagacatttgatattggtgtggtaaaattttcaaacaaactatatatattaacaaagtaaa 36616937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 672 - 743
Target Start/End: Original strand, 46457681 - 46457752
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||||||||||| |||||||||||||| |||||| | ||||  |||||||| |||||||||||||||    
T  46457681 aggggcggatccagacagttgatattggtgtggcaaaatttgcaaagtaactatatatattaacaaagtaaa 46457752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 672 - 743
Target Start/End: Complemental strand, 28998382 - 28998311
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||| ||||||||||| ||||||||||| || |||||| | |||| ||||||||| |||||||||||||||    
T  28998382 aggggtggatccagacaattgatattggtatggcaaaatttgcaaagcaactatatatattaacaaagtaaa 28998311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 675 - 741
Target Start/End: Original strand, 43998120 - 43998186
Alignment:
Q  675 ggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagta 741  Q
    |||||||||||| | ||||||||||||||||||||| | ||||  |||||||| |||||||||||||    
T  43998120 ggcggatccagagagttgatattggtgtgacaaaatttgcaaagtaactatatatattaacaaagta 43998186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 672 - 741
Target Start/End: Original strand, 42896850 - 42896919
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagta 741  Q
    ||||||||||| |||||||||||||||||||| |||||  || |||  |||||||| |||||||||||||    
T  42896850 aggggcggatctagacatttgatattggtgtggcaaaacttttaaaaaaactatatatattaacaaagta 42896919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 684 - 759
Target Start/End: Complemental strand, 18104573 - 18104498
Alignment:
Q  684 agacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||||||||||||||||||||| || |||  |||||||| |||||| |||||||   |||||||| |||||    
T  18104573 agacatttgatattggtgtgacaaaattttgaaacaaactatatatattaataaagtaacacattgatacattaaa 18104498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 676 - 743
Target Start/End: Original strand, 23041601 - 23041670
Alignment:
Q  676 gcggatccagacatttgatattggtgtgacaaaatattcaaatcaac--tatatttattaacaaagtaaa 743  Q
    ||||||||||||| |||||||||||||| |||||| |  ||| ||||  ||||| |||||||||||||||    
T  23041601 gcggatccagacagttgatattggtgtggcaaaatttgaaaagcaactatatatatattaacaaagtaaa 23041670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 729
Target Start/End: Complemental strand, 34644023 - 34643966
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatattt 729  Q
    |||| |||||||||||| || ||||||||||| |||||| | |||| |||||||||||    
T  34644023 agggacggatccagacagttaatattggtgtggcaaaatttgcaaagcaactatattt 34643966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 672 - 796
Target Start/End: Original strand, 13475555 - 13475680
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaa 771  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13475555 aggggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaa 13475654  T
Q  772 atggtata-gtggaagcattttacca 796  Q
    |||||||| |||||||||||||||||    
T  13475655 atggtataggtggaagcattttacca 13475680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 674 - 796
Target Start/End: Original strand, 971737 - 971859
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaaat 773  Q
    |||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||    
T  971737 gggcggatccagacatttgataatagtgtggcaaaacattcaaatcaactatatttattaacaaagtaaat-attgataccttaaacaatatagtaaaat 971835  T
Q  774 ggtata-gtggaagcattttacca 796  Q
    || ||| |||||||||||||||||    
T  971836 ggcataggtggaagcattttacca 971859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 674 - 759
Target Start/End: Complemental strand, 25981525 - 25981440
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| ||||||| |||||||||||| |||||  |||||| ||||||||| |||||||||||||||  ||||||||||||||    
T  25981525 gggcggatctagacattcgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaa 25981440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 678 - 759
Target Start/End: Complemental strand, 3059354 - 3059273
Alignment:
Q  678 ggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||| |||||||||||||||||||| |||||  ||||||  |||||||| |||||||||||||||  ||||||||||||||    
T  3059354 ggatctagacatttgatattggtgtggcaaaactttcaaagtaactatatatattaacaaagtaaaacattgataccttaaa 3059273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 672 - 773
Target Start/End: Complemental strand, 33798793 - 33798692
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaa 771  Q
    ||||||||||| ||||||||||||||||| || |||||  |||||| ||||||||| ||||||||||||| |  ||||| || ||||| | |||||||||    
T  33798793 aggggcggatctagacatttgatattggtttggcaaaactttcaaaacaactatatgtattaacaaagtagaccattgacactttaaatagtatagcgaa 33798694  T
Q  772 at 773  Q
    ||    
T  33798693 at 33798692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 674 - 743
Target Start/End: Complemental strand, 34226064 - 34225995
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||||    
T  34226064 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaa 34225995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 686 - 760
Target Start/End: Complemental strand, 11773366 - 11773292
Alignment:
Q  686 acatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaac 760  Q
    ||||||||| |||||||| |||||| |||||| ||| ||||| |||||| ||||||||  |||||||||||||||    
T  11773366 acatttgattttggtgtggcaaaattttcaaagcaattatatatattaataaagtaaagcattgataccttaaac 11773292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 675 - 776
Target Start/End: Complemental strand, 26327045 - 26326944
Alignment:
Q  675 ggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaaatg 774  Q
    |||||||| |||||||||||||||||||  |||||  ||||||  |||||| | ||||||||||||| |  ||||| || |||||||||||||  |||||    
T  26327045 ggcggatctagacatttgatattggtgtagcaaaactttcaaagaaactatgtatattaacaaagtagaacattgacactttaaacaatatagaaaaatg 26326946  T
Q  775 gt 776  Q
    ||    
T  26326945 gt 26326944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 672 - 773
Target Start/End: Complemental strand, 33727514 - 33727413
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaa 771  Q
    ||||||||||| ||||||||||||||||| ||  ||||  ||||||  |||||||| ||||||||||||| |  ||||| || ||||| | |||||||||    
T  33727514 aggggcggatctagacatttgatattggtttggtaaaactttcaaaataactatatatattaacaaagtagaccattgacactttaaatagtatagcgaa 33727415  T
Q  772 at 773  Q
    ||    
T  33727414 at 33727413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 761
Target Start/End: Complemental strand, 39421354 - 39421265
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaac--tatatttattaacaaagtaaataattgataccttaaaca 761  Q
    ||||| ||||| |||||||||||||||||| |||||  |||||| ||||  ||||| |||||| |||| |||  ||||| ||||||||||    
T  39421354 gggcgaatccatacatttgatattggtgtggcaaaactttcaaagcaactatatatatattaataaagaaaagcattgacaccttaaaca 39421265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 672 - 796
Target Start/End: Original strand, 7351394 - 7351519
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaa 771  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7351394 aggggcggatccagacatttgatattggtgtggcaaaatatttaaatcaactatatttattaacaaagtaaataattgataccttgaacaatatagcgaa 7351493  T
Q  772 atggtatag-tggaagcattttacca 796  Q
    ||||||||| ||||||||||||||||    
T  7351494 atggtatagatggaagcattttacca 7351519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 671 - 774
Target Start/End: Complemental strand, 35702208 - 35702105
Alignment:
Q  671 taggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcga 770  Q
    |||||||| | |||||||||||||||||||||| |||||  ||||||  |||||||| |||||||||||||||  ||||| |||||||||| || ||| |    
T  35702208 taggggcgaacccagacatttgatattggtgtggcaaaactttcaaagaaactatatatattaacaaagtaaaacattgacaccttaaacactacagcaa 35702109  T
Q  771 aatg 774  Q
    ||||    
T  35702108 aatg 35702105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 674 - 759
Target Start/End: Original strand, 29246835 - 29246920
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| ||||||||||||||| |||| |||||  |||||| ||||||||| ||||||||||||| |  ||||||||||||||    
T  29246835 gggcggatctagacatttgatattgatgtggcaaaactttcaaagcaactatatatattaacaaagtataacattgataccttaaa 29246920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 672 - 743
Target Start/End: Complemental strand, 14443124 - 14443053
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    |||| |||||||||||| |||||||||||||| |||||| | ||||  |||||||| |||||||||||||||    
T  14443124 agggacggatccagacagttgatattggtgtggcaaaatttgcaaagtaactatatatattaacaaagtaaa 14443053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 727
Target Start/End: Original strand, 16428095 - 16428148
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatat 727  Q
    ||||||||||||||||||||||||| |||| |||||  ||||||| ||||||||    
T  16428095 gggcggatccagacatttgatattgatgtggcaaaactttcaaataaactatat 16428148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 672 - 796
Target Start/End: Original strand, 47286605 - 47286730
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaa 771  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  47286605 aggggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagtgaa 47286704  T
Q  772 atggtata-gtggaagcattttacca 796  Q
    ||| |||| |||||||||||||||||    
T  47286705 atgatataggtggaagcattttacca 47286730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 674 - 759
Target Start/End: Original strand, 2917620 - 2917705
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||||  ||||||| ||||||    
T  2917620 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgatatcttaaa 2917705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 672 - 743
Target Start/End: Complemental strand, 15545124 - 15545053
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||||||||||| |||||||||||||| |||||| | |||| ||||||||| |||||||||||||||    
T  15545124 aggggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaa 15545053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 743
Target Start/End: Complemental strand, 4940132 - 4940061
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||||| ||| | |||||||||||||| |||||| | ||||  |||||||| |||||||||||||||    
T  4940132 aggggcggatctagagagttgatattggtgtggcaaaatttgcaaaggaactatatatattaacaaagtaaa 4940061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 672 - 761
Target Start/End: Original strand, 18764646 - 18764735
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaaca 761  Q
    ||||||||||||  |||||| |||||| | ||||||||   | |||  |||||||| |||||||||||||||  ||||||||||||||||    
T  18764646 aggggcggatccgaacatttaatattgatctgacaaaactgttaaagtaactatatatattaacaaagtaaagtattgataccttaaaca 18764735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 759 - 796
Target Start/End: Original strand, 35030305 - 35030343
Alignment:
Q  759 acaatatagcgaaatggtatag-tggaagcattttacca 796  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  35030305 acaatatagcgaaatggtatagttggaagcattttacca 35030343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 3e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 676 - 796
Target Start/End: Complemental strand, 13850814 - 13850693
Alignment:
Q  676 gcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaaatgg 775  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  13850814 gcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagtgaattgg 13850715  T
Q  776 tata-gtggaagcattttacca 796  Q
    |||| |||||||||||||||||    
T  13850714 tataggtggaagcattttacca 13850693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 672 - 743
Target Start/End: Original strand, 6174375 - 6174446
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||||||||||| |||||||||||||| |||||| | |||| ||||||||| |||||||||||||||    
T  6174375 aggggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaa 6174446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 672 - 759
Target Start/End: Complemental strand, 595810 - 595723
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||| ||||| |||||||||||||| ||||| |||||| ||||||  |||||||| |||||||||||||||  ||||||| ||||||    
T  595810 aggggtggatctagacatttgatattagtgtggcaaaattttcaaacaaactatatatattaacaaagtaaaacattgatatcttaaa 595723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 674 - 741
Target Start/End: Complemental strand, 843724 - 843657
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagta 741  Q
    ||||||||| | ||||||||||||||||||||||||  || ||| ||||||||| |||||| ||||||    
T  843724 gggcggatctaaacatttgatattggtgtgacaaaacttttaaaacaactatatatattaataaagta 843657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 672 - 796
Target Start/End: Original strand, 27237344 - 27237469
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaa 771  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||    
T  27237344 aggggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgatatcttaaataatatagtgaa 27237443  T
Q  772 atggtata-gtggaagcattttacca 796  Q
    |||||||| |||||||||||||||||    
T  27237444 atggtataggtggaagcattttacca 27237469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 674 - 759
Target Start/End: Complemental strand, 50386225 - 50386140
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||||  ||||||||||||||    
T  50386225 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaa 50386140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 674 - 759
Target Start/End: Original strand, 497692 - 497777
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| |||||| ||||||||||||| |||||  |||||||||||||||| |||||||||||||||  ||| ||||||||||    
T  497692 gggcggatctagacatatgatattggtgtggcaaaactttcaaatcaactatatatattaacaaagtaaaacattaataccttaaa 497777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 672 - 743
Target Start/End: Complemental strand, 22418915 - 22418844
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||||||||||| |||||||||||||| |||||| | |||| ||||||||| |||||||||||||||    
T  22418915 aggggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaa 22418844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 677 - 740
Target Start/End: Original strand, 3541699 - 3541762
Alignment:
Q  677 cggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagt 740  Q
    ||||| |||||||||||||||||||||||||||| ||||||  |||||||| |||||| |||||    
T  3541699 cggatgcagacatttgatattggtgtgacaaaattttcaaagtaactatatatattaataaagt 3541762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 672 - 743
Target Start/End: Original strand, 49430480 - 49430551
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||||| ||| | ||||||||||||||||||||| |  |||  |||||||| |||||||||||||||    
T  49430480 aggggcggatctagagagttgatattggtgtgacaaaatttgtaaagaaactatatatattaacaaagtaaa 49430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 743
Target Start/End: Original strand, 7147179 - 7147248
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||| ||||| |||||||||||||| |||||| | ||||  |||||||| |||||||||| ||||    
T  7147179 gggcggatctagacagttgatattggtgtggcaaaatttgcaaagaaactatatatattaacaaaataaa 7147248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 674 - 779
Target Start/End: Complemental strand, 32942354 - 32942249
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaaat 773  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32942354 gggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaaat 32942255  T
Q  774 ggtata 779  Q
    ||||||    
T  32942254 ggtata 32942249  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 674 - 759
Target Start/End: Original strand, 2123582 - 2123667
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| ||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||||  ||||||||||||||    
T  2123582 gggcggatctagacatttgatattggtgtgacaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaa 2123667  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 674 - 759
Target Start/End: Complemental strand, 38741373 - 38741288
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||||  ||||||||||||||    
T  38741373 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaa 38741288  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 674 - 759
Target Start/End: Complemental strand, 33403823 - 33403738
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||||  |||| |||||||||    
T  33403823 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgttaccttaaa 33403738  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 674 - 759
Target Start/End: Complemental strand, 50158978 - 50158893
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| |||| |||| |||||||||||||||  ||||||||||||||    
T  50158978 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaaccatatatattaacaaagtaaaacattgataccttaaa 50158893  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 672 - 759
Target Start/End: Original strand, 11943666 - 11943753
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||||| |||||||||||||| ||||| |||||| ||||||  |||||||| |||||||||||||||  ||||| ||||||||    
T  11943666 aggggcggatctagacatttgatattagtgtggcaaaattttcaaacaaactatatatattaacaaagtaaaacattgacaccttaaa 11943753  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 672 - 743
Target Start/End: Complemental strand, 37188273 - 37188202
Alignment:
Q  672 aggggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaa 743  Q
    ||||||||||||||||| |||||||||||||| |||||| | |||| ||||||||| |||||||||||||||    
T  37188273 aggggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaa 37188202  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 674 - 759
Target Start/End: Complemental strand, 918096 - 918011
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 759  Q
    ||||||||| | |||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||||  ||||||||||||||    
T  918096 gggcggatctaaacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaa 918011  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 674 - 774
Target Start/End: Complemental strand, 41911864 - 41911764
Alignment:
Q  674 gggcggatccagacatttgatattggtgtgacaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaacaatatagcgaaat 773  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| |||| |||| ||||||||||||| |  ||| | || ||||||| |||||| ||||    
T  41911864 gggcggatctagacatttgatattggtgtggcaaaactttcaaagcaacaatatatattaacaaagtagaccattaacactttaaacagtatagcaaaat 41911765  T
Q  774 g 774  Q
    |    
T  41911764 g 41911764  T

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