View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326R-Insertion-18 (Length: 895)

Name: NF1326R-Insertion-18
Description: NF1326R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326R-Insertion-18
NF1326R-Insertion-18
[»] chr3 (42 HSPs)
chr3 (8-176)||(3789143-3789311)
chr3 (8-170)||(3826865-3827026)
chr3 (757-891)||(3781185-3781320)
chr3 (512-639)||(3821407-3821536)
chr3 (552-639)||(3781403-3781489)
chr3 (756-891)||(3821189-3821324)
chr3 (556-632)||(3789743-3789819)
chr3 (250-339)||(3783864-3783952)
chr3 (8-67)||(3784254-3784313)
chr3 (8-67)||(3821981-3822040)
chr3 (250-339)||(3821741-3821829)
chr3 (556-643)||(54356282-54356365)
chr3 (556-637)||(11633077-11633154)
chr3 (557-643)||(8708032-8708114)
chr3 (557-643)||(9059919-9060001)
chr3 (556-607)||(33832811-33832862)
chr3 (556-643)||(10333114-10333197)
chr3 (556-643)||(21388411-21388494)
chr3 (135-176)||(3821903-3821944)
chr3 (556-638)||(40285039-40285117)
chr3 (556-643)||(42583606-42583690)
chr3 (556-604)||(3942604-3942652)
chr3 (556-604)||(10297426-10297474)
chr3 (558-643)||(12101076-12101157)
chr3 (559-643)||(7433591-7433671)
chr3 (558-604)||(2788477-2788523)
chr3 (556-635)||(24842481-24842555)
chr3 (556-643)||(45586113-45586196)
chr3 (556-643)||(54981900-54981983)
chr3 (559-592)||(3827468-3827501)
chr3 (556-643)||(44077791-44077876)
chr3 (140-176)||(3784026-3784062)
chr3 (556-604)||(10332711-10332758)
chr3 (558-643)||(47567628-47567709)
chr3 (828-887)||(3790031-3790090)
chr3 (579-614)||(3827511-3827546)
chr3 (556-635)||(26167886-26167964)
chr3 (556-636)||(54981604-54981680)
chr3 (556-643)||(30498429-30498512)
chr3 (558-600)||(47567788-47567830)
chr3 (556-601)||(24485623-24485668)
chr3 (556-604)||(54585859-54585908)
[»] scaffold0267 (4 HSPs)
scaffold0267 (512-695)||(3199-3383)
scaffold0267 (8-176)||(2695-2862)
scaffold0267 (756-891)||(3431-3566)
scaffold0267 (250-348)||(2935-3033)
[»] chr8 (25 HSPs)
chr8 (557-643)||(1030394-1030476)
chr8 (556-638)||(342682-342760)
chr8 (556-643)||(6007684-6007767)
chr8 (556-643)||(35308133-35308218)
chr8 (556-604)||(6008041-6008089)
chr8 (556-637)||(13916545-13916622)
chr8 (556-607)||(27882192-27882243)
chr8 (556-632)||(27964827-27964899)
chr8 (556-607)||(28022372-28022423)
chr8 (556-643)||(27963967-27964050)
chr8 (556-638)||(27881325-27881403)
chr8 (556-638)||(27917548-27917626)
chr8 (556-638)||(28021506-28021584)
chr8 (556-604)||(40737438-40737486)
chr8 (556-603)||(5424521-5424568)
chr8 (556-643)||(5424783-5424867)
chr8 (558-600)||(5764895-5764937)
chr8 (558-636)||(17072983-17073058)
chr8 (558-636)||(17575212-17575287)
chr8 (559-632)||(32855144-32855214)
chr8 (557-641)||(9269261-9269341)
chr8 (556-607)||(24981520-24981571)
chr8 (558-638)||(28828032-28828110)
chr8 (556-638)||(15199742-15199820)
chr8 (556-643)||(40796176-40796261)
[»] chr5 (21 HSPs)
chr5 (556-643)||(1349668-1349751)
chr5 (556-643)||(19134772-19134855)
chr5 (556-643)||(25458523-25458606)
chr5 (556-635)||(43582987-43583060)
chr5 (556-604)||(35039764-35039812)
chr5 (556-635)||(35040411-35040487)
chr5 (556-638)||(5246526-5246604)
chr5 (556-604)||(18585692-18585740)
chr5 (556-607)||(2211275-2211326)
chr5 (556-643)||(6429486-6429570)
chr5 (558-643)||(19135030-19135113)
chr5 (556-643)||(5249362-5249445)
chr5 (556-602)||(35781642-35781688)
chr5 (556-637)||(19950751-19950828)
chr5 (556-604)||(28794014-28794062)
chr5 (559-607)||(34383394-34383442)
chr5 (556-637)||(35781381-35781458)
chr5 (556-604)||(38184304-38184351)
chr5 (556-604)||(38214006-38214053)
chr5 (556-643)||(4727853-4727937)
chr5 (556-590)||(35781921-35781955)
[»] chr4 (22 HSPs)
chr4 (556-643)||(41692446-41692529)
chr4 (556-638)||(53130857-53130935)
chr4 (556-643)||(54175847-54175930)
chr4 (556-638)||(2494080-2494158)
chr4 (556-638)||(13222193-13222272)
chr4 (556-643)||(44886184-44886268)
chr4 (556-643)||(7238888-7238971)
chr4 (556-643)||(19298513-19298598)
chr4 (556-604)||(4780686-4780734)
chr4 (556-638)||(46255241-46255322)
chr4 (556-604)||(49897386-49897434)
chr4 (558-637)||(11125267-11125342)
chr4 (557-643)||(39136054-39136136)
chr4 (556-604)||(12928563-12928611)
chr4 (556-604)||(36889705-36889753)
chr4 (556-591)||(24739112-24739147)
chr4 (556-636)||(41104012-41104087)
chr4 (574-604)||(7238678-7238708)
chr4 (563-600)||(6046627-6046664)
chr4 (556-604)||(27838995-27839044)
chr4 (577-643)||(33802970-33803032)
chr4 (558-643)||(50715690-50715772)
[»] chr2 (21 HSPs)
chr2 (556-643)||(30668857-30668940)
chr2 (556-636)||(30632216-30632292)
chr2 (556-643)||(40662747-40662830)
chr2 (557-604)||(15458960-15459007)
chr2 (556-636)||(42676478-42676554)
chr2 (556-638)||(30666274-30666352)
chr2 (556-638)||(43968210-43968288)
chr2 (563-637)||(43968562-43968632)
chr2 (556-603)||(7495597-7495644)
chr2 (556-643)||(30620566-30620649)
chr2 (556-643)||(30623187-30623270)
chr2 (558-607)||(14787216-14787265)
chr2 (556-638)||(34454178-34454256)
chr2 (556-604)||(3197004-3197052)
chr2 (556-604)||(39844244-39844292)
chr2 (556-643)||(7074888-7074971)
chr2 (556-604)||(21479419-21479468)
chr2 (558-643)||(1826771-1826852)
chr2 (556-604)||(21479222-21479270)
chr2 (556-604)||(36950360-36950408)
chr2 (556-604)||(41145112-41145160)
[»] chr7 (25 HSPs)
chr7 (556-638)||(21696484-21696561)
chr7 (556-643)||(38319956-38320039)
chr7 (562-638)||(26151171-26151243)
chr7 (556-643)||(26970413-26970496)
chr7 (556-643)||(30121283-30121366)
chr7 (556-643)||(24689351-24689436)
chr7 (557-643)||(33857994-33858076)
chr7 (563-609)||(23808961-23809007)
chr7 (556-643)||(24688785-24688868)
chr7 (558-604)||(26246660-26246706)
chr7 (564-643)||(26970742-26970817)
chr7 (556-635)||(30121923-30121998)
chr7 (556-604)||(5801076-5801125)
chr7 (556-604)||(10283333-10283381)
chr7 (556-604)||(24162207-24162255)
chr7 (556-604)||(40261921-40261969)
chr7 (556-604)||(46897952-46898000)
chr7 (558-638)||(47222541-47222618)
chr7 (567-643)||(29854700-29854772)
chr7 (566-604)||(21696825-21696863)
chr7 (576-643)||(31278218-31278281)
chr7 (556-601)||(18984714-18984759)
chr7 (556-601)||(18989529-18989574)
chr7 (556-601)||(18999343-18999388)
chr7 (556-604)||(35526489-35526540)
[»] chr6 (7 HSPs)
chr6 (556-643)||(2258698-2258781)
chr6 (562-643)||(7204795-7204872)
chr6 (556-607)||(14094087-14094138)
chr6 (556-643)||(21980920-21981003)
chr6 (556-604)||(26001281-26001329)
chr6 (311-348)||(21092769-21092806)
chr6 (556-638)||(33438677-33438754)
[»] scaffold0016 (2 HSPs)
scaffold0016 (557-643)||(106069-106151)
scaffold0016 (556-643)||(205258-205340)
[»] chr1 (16 HSPs)
chr1 (558-643)||(43325954-43326035)
chr1 (556-643)||(24686204-24686287)
chr1 (556-638)||(49243790-49243868)
chr1 (556-643)||(43114756-43114840)
chr1 (558-637)||(6318922-6318997)
chr1 (556-643)||(6844474-6844557)
chr1 (556-643)||(48738506-48738589)
chr1 (558-607)||(33674993-33675042)
chr1 (562-643)||(47795054-47795131)
chr1 (556-643)||(47795431-47795514)
chr1 (556-604)||(11981724-11981771)
chr1 (556-604)||(43114991-43115039)
chr1 (556-643)||(42834920-42835001)
chr1 (556-643)||(17054238-17054321)
chr1 (556-643)||(47795947-47796030)
chr1 (577-643)||(39842797-39842859)
[»] scaffold0024 (1 HSPs)
scaffold0024 (558-643)||(150188-150269)
[»] scaffold0224 (1 HSPs)
scaffold0224 (556-643)||(22001-22082)
[»] scaffold0625 (1 HSPs)
scaffold0625 (556-601)||(7187-7232)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 4e-68; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 3789143 - 3789311
Alignment:
Q  8 acttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataacagtgtgtttttgttttatgattatcttgatgcaacttattt 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3789143 acttctttattttctgttgcagttggttattagtaacaaattcttgtagagttgataaccgtgtgtttttgttttatgattatcttgatgcaacttattt 3789242  T
Q  108 cttttatcgttagnnnnnnncttgaaggaattttatcgtgagtatttattctgcttaattatgacttga 176  Q
    |||||||||||||       | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  3789243 cttttatcgttagtttttttcatgaaggaattttatcgtgagtatttattctacttaattatgacttga 3789311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 3826865 - 3827026
Alignment:
Q  8 acttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataacagtgtgtttttgttttatgattatcttgatgcaacttattt 107  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3826865 acttctttattttctgttgcaatcagttattagtaacaaactcttgtagagttgataacagtgtgtttttgttttatgattatcttgatgcaacttattt 3826964  T
Q  108 cttttatcgttagnnnnnnncttgaaggaattttatcgtgagtatttattctgcttaattatg 170  Q
    |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  3826965 cttttatcgttag-ttttttcttgaaggaattttatcgtgagtatttattctgcttaattatg 3827026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 757 - 891
Target Start/End: Complemental strand, 3781320 - 3781185
Alignment:
Q  757 aacaaacttatgttttgatttgtaactaa-aaactctaaccctaacatggtggtttactcaaattcattt-catttaaccacatctgaaatagttggtat 854  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  3781320 aacaaacttttattttgatttgtaactaacaaactctaaccctaacatgccg-tttactcaaattcattttcatttaaccacatctgaaacagtttgtat 3781222  T
Q  855 gtgtattaatttactaaggtacattgacaatttataa 891  Q
    |||||||||||||| ||||||||||||||||||||||    
T  3781221 gtgtattaatttacaaaggtacattgacaatttataa 3781185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 512 - 639
Target Start/End: Complemental strand, 3821536 - 3821407
Alignment:
Q  512 ttatcatgataaacatcgcaaaatagattatagnnnnnnn---ataaagtttgtttggatacaattatataaaagtgattttttgttacaaaattaatta 608  Q
    ||||||||||||||||||||||||||||| |||          ||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||    
T  3821536 ttatcatgataaacatcgcaaaatagattctagttttttttttataaagtttgtttggatacaactatataaaagtgaatttttgttacaaaa-taatta 3821438  T
Q  609 gttcaatcttttgactcatattttctctctt 639  Q
    |||||||||||||||||||||||||||||||    
T  3821437 gttcaatcttttgactcatattttctctctt 3821407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 552 - 639
Target Start/End: Complemental strand, 3781489 - 3781403
Alignment:
Q  552 ataaagtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctctt 639  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3781489 ataaagtttgtttggaaacaactatataaaagtgattttttgttacaaaa-taattagttcaatcttttgactcatattttctctctt 3781403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 756 - 891
Target Start/End: Complemental strand, 3821324 - 3821189
Alignment:
Q  756 taacaaacttatgttttgatttgtaactaaaa-actctaaccctaacatggtggtttactcaaattcattt-catttaaccacatctgaaatagttggta 853  Q
    |||||||||| | |||||||||||||||||   ||||||||||||||||| || ||||||||||||||||| |||||||||| |||||||| |||| |||    
T  3821324 taacaaacttttattttgatttgtaactaaccgactctaaccctaacatgttg-tttactcaaattcattttcatttaacca-atctgaaacagtttgta 3821227  T
Q  854 tgtgtattaatttactaaggtacattgacaatttataa 891  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  3821226 tgtgtattaatttacaaaggtccattgacaatttataa 3821189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 556 - 632
Target Start/End: Original strand, 3789743 - 3789819
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatatttt 632  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  3789743 agtttgtttggatacaattatataaaagttattttttgttacaaaattaattagttcaatcctttgactcatatttt 3789819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 3783952 - 3783864
Alignment:
Q  250 ataagcgcttataatttgttattaagagtctatttgttatatcttttataagattaaaacaacttttaaaagtattgcttccgtttgtta 339  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||||||  ||||||| |||||||||||||| ||||||||||||    
T  3783952 ataagcgcttataatttgttattaagagcctgtttattatatcttttataaga-aaaaacaatttttaaaagtattgattccgtttgtta 3783864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 3784313 - 3784254
Alignment:
Q  8 acttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataaca 67  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3784313 acttctttattttctgttgcagttggttattagtaacaaattcttgtagagttgataaca 3784254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 3822040 - 3821981
Alignment:
Q  8 acttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataaca 67  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3822040 acttctttattttctgttgcagttggttattagtaacaaattcttgtagagttgataaca 3821981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 3821829 - 3821741
Alignment:
Q  250 ataagcgcttataatttgttattaagagtctatttgttatatcttttataagattaaaacaacttttaaaagtattgcttccgtttgtta 339  Q
    ||||| |||||||||||||||||||||| || ||| |||||||||||||||||  ||||||| |||||||||||||| ||||||||||||    
T  3821829 ataagagcttataatttgttattaagagcctgtttattatatcttttataaga-aaaaacaatttttaaaagtattgattccgtttgtta 3821741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 54356282 - 54356365
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||| || |||||||||| |||||||||||||||    ||||||||||||||||| | ||||||||||||||| ||||    
T  54356282 agtttgtttggatataactatataaaagggattttttgttacaa----aattagttcaatcttttaaatcatattttctctctcctct 54356365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 556 - 637
Target Start/End: Original strand, 11633077 - 11633154
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctc 637  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||    ||||||||||||||||| | ||||||||||||||    
T  11633077 agtttgtttggatacaactatataaaagagattttttattacaa----aattagttcaatcttttaaatcatattttctctc 11633154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 643
Target Start/End: Original strand, 8708032 - 8708114
Alignment:
Q  557 gtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||| ||||||| ||||||||||  ||||||||||||||    ||||||||||||||||| | ||||||||||||||| ||||    
T  8708032 gtttgttttgatacaactatataaaagaaattttttgttacaa----aattagttcaatcttttaaatcatattttctctctcctct 8708114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 643
Target Start/End: Original strand, 9059919 - 9060001
Alignment:
Q  557 gtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||| ||||||| ||||||||||  ||||||||||||||    ||||||||||||||||| | ||||||||||||||| ||||    
T  9059919 gtttgttttgatacaactatataaaagaaattttttgttacaa----aattagttcaatcttttaaatcatattttctctctcctct 9060001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 607
Target Start/End: Original strand, 33832811 - 33832862
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaatt 607  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  33832811 agtttgtttggatacaactatataaaagagattttttgtcacaaaattaatt 33832862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 10333114 - 10333197
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  10333114 agtttgtttagatacaactatataaaagggattttttgttacaa----aattagttcaatcttttaaacaatattttctctctcctct 10333197  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 21388494 - 21388411
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||    ||||||||||||||||| |   ||||||||||||| ||||    
T  21388494 agtttgtttggatacaactatataaaagggattttttgttataa----aattagttcaatcttttaaacaatattttctctctcctct 21388411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 3821944 - 3821903
Alignment:
Q  135 gaattttatcgtgagtatttattctgcttaattatgacttga 176  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  3821944 gaattttatcgtcagtatttattctgcttaattatgacttga 3821903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 40285117 - 40285039
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||| ||||||||||| ||||||||||  ||||||||||||||||||||    |||||| |||| | |||||||||||||||    
T  40285117 agtttatttggatacaactatataaaaggaattttttgttacaaaattaa----ttcaatattttaaatcatattttctctct 40285039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 42583606 - 42583690
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||| |||||| |||||||||| |||||||||||| |||   ||||||||||||||||| | |||| |||| ||||| ||||    
T  42583606 agtttgtttgaatacaactatataaaagagattttttgttataaa---aattagttcaatcttttaaatcatgttttttctctcctct 42583690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 3942652 - 3942604
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    |||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  3942652 agtttgtttgaatacaactatataaaagggattttttgttacaaaatta 3942604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 10297426 - 10297474
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||||||    
T  10297426 agtttgttttgatacaaatatataaaagagattttttgttacaaaatta 10297474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 12101076 - 12101157
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||| || |||||||||| ||| |||||||||||    ||||||||||||||||| |   ||||||||||||||||||    
T  12101076 tttgtttggatataactatataaaagagatgttttgttacaa----aattagttcaatcttttaaacaatattttctctcttctct 12101157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 559 - 643
Target Start/End: Complemental strand, 7433671 - 7433591
Alignment:
Q  559 ttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||| |||||||||   |||||||||||||||    ||||||| |||||||| | ||||||||||||| ||||||    
T  7433671 ttgtttggatacaactatataaaatgaattttttgttacaaa----attagtttaatcttttaaatcatattttctcttttctct 7433591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 2788523 - 2788477
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  2788523 tttgtttggatacaactatgtaaaagtgattttttgtttcaaaatta 2788477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 24842555 - 24842481
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctc 635  Q
    ||||||||||||||||| |||||||||| | |||||||||||||    |||||||||||| |||| | ||||||||||||    
T  24842555 agtttgtttggatacaactatataaaagag-ttttttgttacaa----aattagttcaatattttaaatcatattttctc 24842481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 45586113 - 45586196
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||| ||||||  |||||||||  ||||||||||||||    |||||||||||||||||||  ||||||||| |||| ||||    
T  45586113 agtttgtttgaatacaacaatataaaagatattttttgttacaa----aattagttcaatcttttgaaccatattttcactctcctct 45586196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 54981900 - 54981983
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||||| |||||||||  |||||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  54981900 agtttgttttgatacaactatataaaacggattttttgttacaa----aattagttcaatcttttaaaatatattttctctctcctct 54981983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 592
Target Start/End: Original strand, 3827468 - 3827501
Alignment:
Q  559 ttgtttggatacaattatataaaagtgatttttt 592  Q
    ||||||||||||||||||||||||||||||||||    
T  3827468 ttgtttggatacaattatataaaagtgatttttt 3827501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 44077876 - 44077791
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga--ttttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||   |  |||||||||||||    ||||||||||||||||| | | ||||||||||||||||||    
T  44077876 agtttgtttggatacaactatataaaatgtattttttttgttacaa----aattagttcaatcttttaaattatattttctctcttctct 44077791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 3784062 - 3784026
Alignment:
Q  140 ttatcgtgagtatttattctgcttaattatgacttga 176  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3784062 ttatcgtcagtatttattctgcttaattatgacttga 3784026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 10332758 - 10332711
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||| || |||||||||||||||||    
T  10332758 agtttgtttggatacaactatataaaaggga-tttttgttacaaaatta 10332711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 47567709 - 47567628
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||| | |||||||||| |||||||||||||||    | ||||||||||||||| |   ||||||||||||| ||||    
T  47567709 tttgtttggatactactatataaaagggattttttgttacaa----agttagttcaatcttttaagcaatattttctctctcctct 47567628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 828 - 887
Target Start/End: Original strand, 3790031 - 3790090
Alignment:
Q  828 tttaaccacatctgaaatagttggtatgtgtattaatttactaaggtacattgacaattt 887  Q
    ||||||||||||||||| |||| ||  | |||||||||||| ||||| ||||||||||||    
T  3790031 tttaaccacatctgaaacagtttgtgggagtattaatttacaaaggttcattgacaattt 3790090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 614
Target Start/End: Original strand, 3827511 - 3827546
Alignment:
Q  579 aaaagtgattttttgttacaaaattaattagttcaa 614  Q
    |||||| |||||||||||||||||||||||||||||    
T  3827511 aaaagttattttttgttacaaaattaattagttcaa 3827546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 26167964 - 26167886
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga---ttttttgttacaaaattaattagttcaatcttttgactcatattttctc 635  Q
    ||||||||||||||||| |||||||||| ||   |||||||||||||    ||||||||||||||||| | ||||||| ||||    
T  26167964 agtttgtttggatacaactatataaaagagatttttttttgttacaa----aattagttcaatcttttaaatcatattctctc 26167886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 54981680 - 54981604
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctct 636  Q
    ||||||||| ||||||||||||||||| ||||||||  || |||    ||||||||||||||||| | | |||||||||||    
T  54981680 agtttgttttgatacaattatataaaaatgatttttcattgcaa----aattagttcaatcttttaaattatattttctct 54981604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 30498512 - 30498429
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||||| |||||||||| |||||| ||||| |||||||    ||||||| ||||||   ||||||||||||| ||||    
T  30498512 agtttgttttgatacaactatataaaagagattttctgttataaaatta----gttcaatattttgatctatattttctctctcctct 30498429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 600
Target Start/End: Complemental strand, 47567830 - 47567788
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaa 600  Q
    ||||||||||||| | |||||||||| ||||||||||||||||    
T  47567830 tttgtttggatactactatataaaagggattttttgttacaaa 47567788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 601
Target Start/End: Complemental strand, 24485668 - 24485623
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaa 601  Q
    ||||||||||||||||| |||||||||  | |||||||||||||||    
T  24485668 agtttgtttggatacaactatataaaataggttttttgttacaaaa 24485623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 54585908 - 54585859
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga-ttttttgttacaaaatta 604  Q
    ||||||||||||||||  |||||||||| || ||||||||||||||||||    
T  54585908 agtttgtttggatacagctatataaaagcgatttttttgttacaaaatta 54585859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 123; Significance: 1e-62; HSPs: 4)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 512 - 695
Target Start/End: Original strand, 3199 - 3383
Alignment:
Q  512 ttatcatgataaacatcgcaaaatagattatagnnnnnnnataaagtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagtt 611  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3199 ttatcatgataaacatcgcaaaatagattatagtttttttataaagtttgtttggatacaactatataaaagtgattttttgttacaaaattaattagtt 3298  T
Q  612 caatcttttgactcatattttctctcttctctnnnnnnntctatttg-ttagtaattactcttaacaacttctcattcgaagttg 695  Q
    ||||||||||||||||||||||||||||||||       |||||||| |||| | ||||||||||||||||||||||||||||||    
T  3299 caatcttttgactcatattttctctcttctctaaaaaaatctatttgtttagaagttactcttaacaacttctcattcgaagttg 3383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 2695 - 2862
Alignment:
Q  8 acttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataacagtgtgtttttgttttatgattatcttgatgcaacttattt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    |||||||    
T  2695 acttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataacagtgtgtttttgttttatgattgtctttat-tttcttattt 2793  T
Q  108 cttttatcgttagnnnnnnncttgaaggaattttatcgtgagtatttattctgcttaattatgacttga 176  Q
    |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2794 cttttatcgttagtttttttcttgaaggaattttatcgtgagtatttattctgcttaattatgacttga 2862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 756 - 891
Target Start/End: Original strand, 3431 - 3566
Alignment:
Q  756 taacaaacttatgttttgatttgtaactaaaaactctaaccctaacatggtggtttactcaaattcattt-catttaaccacatctgaaatagttggtat 854  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  3431 taacaaacttatattttgatttgtaactaaaaactctaaccctaacatgctg-tttactcaaattcattttcatttaaccacatctgaaatagtttgtat 3529  T
Q  855 gtgtattaatttactaaggtacattgacaatttataa 891  Q
    |||||||||||||| |||||||||| |||||||||||    
T  3530 gtgtattaatttacaaaggtacatttacaatttataa 3566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 250 - 348
Target Start/End: Original strand, 2935 - 3033
Alignment:
Q  250 ataagcgcttataatttgttattaagagtctatttgttatatcttttataagattaaaacaacttttaaaagtattgcttccgtttgttacatcttttt 348  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2935 ataagcgcttataatttgttattaagagcctgtttgttatatcttttataagattaaaacaacttttaaaagtattgcttccgtttgttacatcttttt 3033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 557 - 643
Target Start/End: Original strand, 1030394 - 1030476
Alignment:
Q  557 gtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||||| |||| |||||||||||| ||||    
T  1030394 gtttgtttggatacaactatataaaagtgattttttgttacaa----aattagttcaatcttttaactcttattttctctctcctct 1030476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 342760 - 342682
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||    ||||||||||||||||| | | ||||||||||||    
T  342760 agtttgtttggatacaactatataaaagagattttttgttacaaa----attagttcaatcttttggcccttattttctctct 342682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 6007684 - 6007767
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||| |||||| |||||||||| ||||||||||| |||    ||||||||||||||||| | ||||||||||||||| ||||    
T  6007684 agtttgtttgaatacaactatataaaagggattttttgttgcaa----aattagttcaatcttttaaatcatattttctctctcctct 6007767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 35308218 - 35308133
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga--ttttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||| ||  |||||||||||||    ||||||||||||||||| | ||||||||||||||| ||||    
T  35308218 agtttgtttggatacaactatataaaagggattttttttgttacaa----aattagttcaatcttttaaatcatattttctctctcctct 35308133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 6008041 - 6008089
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  6008041 agtttgtttgcatacaattatataaaagggattttttgttacaaaatta 6008089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 556 - 637
Target Start/End: Original strand, 13916545 - 13916622
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctc 637  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||    ||||||||||||| |  |||||||| ||||    
T  13916545 agtttgtttggatacaactatataaaagggattttttgttacaaaatt----agttcaatcttttaaaacatattttttctc 13916622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 607
Target Start/End: Original strand, 27882192 - 27882243
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaatt 607  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  27882192 agtttgtttggatacaactatataaaagagattttttgttacaaaactaatt 27882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 632
Target Start/End: Original strand, 27964827 - 27964899
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatatttt 632  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    || |||||||||||||| | |||||||||    
T  27964827 agtttgtttggatacaactatataaaagggattttttgttacaa----aactagttcaatcttttaattcatatttt 27964899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 607
Target Start/End: Original strand, 28022372 - 28022423
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaatt 607  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  28022372 agtttgtttggatacaactatataaaagagattttttgttacaaaactaatt 28022423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 27963967 - 27964050
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||    ||||||||||| ||||| | | ||||||||||||| ||||    
T  27963967 agtttgtttggatacaactatataaaagaaattttttgttacaa----aattagttcaaccttttaaattatattttctctctcctct 27964050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 27881325 - 27881403
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||    ||||||||||| ||||| | | |||||||||||||    
T  27881325 agtttgtttggatacaactatataaaagaaattttttgttacaa----aattagttcaaccttttaaattatattttctctct 27881403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 27917548 - 27917626
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||    ||||||||||| ||||| | | |||||||||||||    
T  27917548 agtttgtttggatacaactatataaaagaaattttttgttacaa----aattagttcaaccttttaaattatattttctctct 27917626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 28021506 - 28021584
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||    ||||||||||| ||||| | | |||||||||||||    
T  28021506 agtttgtttggatacaactatataaaagaaattttttgttacaa----aattagttcaaccttttaaattatattttctctct 28021584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 40737438 - 40737486
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  40737438 agtttgtttggatacaactatataaaagaaattttttgttacaaaatta 40737486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 556 - 603
Target Start/End: Complemental strand, 5424568 - 5424521
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatt 603  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||    
T  5424568 agtttgtttggatacaactatataaaagagactttttgttacaaaatt 5424521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 5424783 - 5424867
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga-ttttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||| || |||||||||||||    ||||||||||||||||| |  ||||||||| |||| ||||    
T  5424783 agtttgtttggatacaactatataaaagggatttttttgttacaa----aattagttcaatcttttaaagcatattttcactctcctct 5424867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 600
Target Start/End: Original strand, 5764895 - 5764937
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaa 600  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  5764895 tttgtttggatacaactatataaaagggattttttgttacaaa 5764937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 17073058 - 17072983
Alignment:
Q  558 tttgtttggatacaattatataaaagtga-ttttttgttacaaaattaattagttcaatcttttgactcatattttctct 636  Q
    ||||||||||||||| |||||||||| || |||||| ||||||    ||||||||||||||||| | |||||||||||||    
T  17073058 tttgtttggatacaactatataaaagagatttttttattacaa----aattagttcaatcttttaaatcatattttctct 17072983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 636
Target Start/End: Original strand, 17575212 - 17575287
Alignment:
Q  558 tttgtttggatacaattatataaaagtga-ttttttgttacaaaattaattagttcaatcttttgactcatattttctct 636  Q
    ||||||||||||||| |||||||||| || |||||| ||||||    ||||||||||||||||| | |||||||||||||    
T  17575212 tttgtttggatacaactatataaaagagatttttttattacaa----aattagttcaatcttttaaatcatattttctct 17575287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 632
Target Start/End: Original strand, 32855144 - 32855214
Alignment:
Q  559 ttgtttggatacaattatataaaagtga-ttttttgttacaaaattaattagttcaatcttttgactcatatttt 632  Q
    |||||||| |||||||||||||||| || |||||||||||||    |||||||||||||||||||| | ||||||    
T  32855144 ttgtttggttacaattatataaaagagatttttttgttacaa----aattagttcaatcttttgacccttatttt 32855214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 641
Target Start/End: Complemental strand, 9269341 - 9269261
Alignment:
Q  557 gtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttct 641  Q
    ||||||||||  |||| |||||||||| |||||||| ||||||||||||     |||| |||||||| | |||||||||||||||    
T  9269341 gtttgtttggccacaactatataaaagagattttttattacaaaattaa----ctcaaacttttgacacttattttctctcttct 9269261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 607
Target Start/End: Original strand, 24981520 - 24981571
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaatt 607  Q
    |||||||||| |||| | ||| |||||| |||||||||||||||||||||||    
T  24981520 agtttgtttgaatacgactatgtaaaagggattttttgttacaaaattaatt 24981571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 638
Target Start/End: Complemental strand, 28828110 - 28828032
Alignment:
Q  558 tttgtttggatacaattatataaaagtgatttttt--gttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||| |||||||||| ||||||||  |||||||    | ||||||||||||||| | |||||||||| ||||    
T  28828110 tttgtttggatacaactatataaaagggatttttttcgttacaa----agttagttcaatcttttaaatcatattttcactct 28828032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 15199742 - 15199820
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    |||||||||| |||||| ||||||||||   |||||| ||||||    ||||||||||||||||| | | |||||||||||||    
T  15199742 agtttgtttgaatacaactatataaaaggagttttttattacaa----aattagttcaatcttttaaataatattttctctct 15199820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 40796261 - 40796176
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga--ttttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||  ||||||||| |||  |||||| |||||||||||    |||||||||||| |  |||||||||||||| ||||    
T  40796261 agtttgtttggatacagctatataaaaatgaattttttttttacaaaatta----gttcaatcttttaaaccatattttctctctcctct 40796176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 1349668 - 1349751
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    ||||||||||||||||| | ||||||||||||||| ||||    
T  1349668 agtttgtttggatacaactatataaaagggattttttgttacaa----aattagttcaatcttttaaatcatattttctctctcctct 1349751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 19134772 - 19134855
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||||||||||||||||| |||||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  19134772 agtttgtttggatacaattatataaaagggattttttgttacaa----aattagttcaatcttttaaacaatattttctctctcctct 19134855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 25458606 - 25458523
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||    ||||||||||||||||||  |||||||||||||| ||||    
T  25458606 agtttgattgaatacaattatataaaagcgattttttgttacaaa----attagttcaatcttttgatccatattttctctctcctct 25458523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 635
Target Start/End: Original strand, 43582987 - 43583060
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctc 635  Q
    |||||||||||||||||  ||||||||| |||||||||||||||||||    ||||||||||||||| ||||||||||||    
T  43582987 agtttgtttggatacaa--atataaaagggattttttgttacaaaatt----agttcaatcttttgaatcatattttctc 43583060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 35039812 - 35039764
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  35039812 agtttgtttggatacaactatataaaagggattttttgttacaaaatta 35039764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 35040487 - 35040411
Alignment:
Q  556 agtttgtttggatacaattatataaaagtg-attttttgttacaaaattaattagttcaatcttttgactcatattttctc 635  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||    ||||||||||||||||| | ||||||||||||    
T  35040487 agtttgtttggatacaactatataaaagggaattttttgttacaa----aattagttcaatcttttaaatcatattttctc 35040411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 5246526 - 5246604
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||    ||||||||||||||||| |  | ||||||||||||    
T  5246526 agtttgtttggatacaactatataaaagagatttttttttacaa----aattagttcaatcttttaaaccttattttctctct 5246604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 18585692 - 18585740
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||    
T  18585692 agtttgtttggatacaactatataaaaacgattttttgttacaaaatta 18585740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 556 - 607
Target Start/End: Complemental strand, 2211326 - 2211275
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaatt 607  Q
    |||||||||||||||||   |||||||| |||||||||||||||||||||||    
T  2211326 agtttgtttggatacaaacttataaaagagattttttgttacaaaattaatt 2211275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 6429570 - 6429486
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgat-tttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||| |||||||| |||||||||  ||| |||||||||||||||||    ||||||||||||||  |||||||||||||| ||||    
T  6429570 agtttgttaggatacaactatataaaaacgatatttttgttacaaaatta----gttcaatcttttgatccatattttctctctcctct 6429486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 19135030 - 19135113
Alignment:
Q  558 tttgtttggatacaattatataaaagtga--ttttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||| |||||||||| ||  |||||||||||||    ||||||||||||||||| |  |||||||||||||| ||||    
T  19135030 tttgtttggatacaactatataaaagagattttttttgttacaa----aattagttcaatcttttaaaccatattttctctctcctct 19135113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 5249362 - 5249445
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||| ||||| |||||| |||||||||| ||||||||||| |||    ||||||||||||||||| | ||||||||| ||||| ||||    
T  5249362 agttagtttgaatacaactatataaaagggattttttgttgcaa----aattagttcaatcttttaaatcatattttttctctactct 5249445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 602
Target Start/End: Complemental strand, 35781688 - 35781642
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaat 602  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  35781688 agtttgttttgatacaactatataaaagggattttttgttacaaaat 35781642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 637
Target Start/End: Original strand, 19950751 - 19950828
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctc 637  Q
    ||||||||| ||||||||||||||||||  ||||||| |||||    |||||| |||||||||||||| | |||| ||||||    
T  19950751 agtttgtttagatacaattatataaaaggtattttttattaca----taattatttcaatcttttgacccttattctctctc 19950828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 28794014 - 28794062
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||| | ||||||| ||||||||||||    
T  28794014 agtttgtttggatacaactatataaacgggatttttcgttacaaaatta 28794062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 34383394 - 34383442
Alignment:
Q  559 ttgtttggatacaattatataaaagtgattttttgttacaaaattaatt 607  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| ||||    
T  34383394 ttgtttggatacaactatataaaagggatattttgttacaaaatcaatt 34383442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 637
Target Start/End: Original strand, 35781381 - 35781458
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctc 637  Q
    |||| |||||||||||| |||||||||   ||||||||||||||    |||||||| |||||||| | ||||||||||||||    
T  35781381 agttcgtttggatacaactatataaaatatattttttgttacaa----aattagtttaatcttttaaatcatattttctctc 35781458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 38184304 - 38184351
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||    
T  38184304 agtttgtttgggtacaactatataaaag-gattttttgttacaaaatta 38184351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 38214053 - 38214006
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||    
T  38214053 agtttgtttgggtacaactatataaaag-gattttttgttacaaaatta 38214006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 4727937 - 4727853
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattt-tttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||| |||||| |||||||||| ||||| |||||||||||||||    ||||| |||||| | | ||||||||||||| ||||    
T  4727937 agtttgtttgaatacaactatataaaagggatttgtttgttacaaaatta----gttcattcttttaaattatattttctctctcctct 4727853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 590
Target Start/End: Original strand, 35781921 - 35781955
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgatttt 590  Q
    ||||||||||||||||| |||||||||||||||||    
T  35781921 agtttgtttggatacaactatataaaagtgatttt 35781955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 9e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 41692446 - 41692529
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||    ||||||||||| | ||||||||||||||| ||||    
T  41692446 agtttgtttggatacaattatataaaaaggattttttgttacaaaattaa----ttcaatcttttaaatcatattttctctctcctct 41692529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 53130935 - 53130857
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||    ||||||||||||||||||| |||| |||||||||    
T  53130935 agtttgtttggatacaactatataaaagagattttttgttacaaa----attagttcaatcttttgacccataatttctctct 53130857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 54175847 - 54175930
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    ||||||||||||||||| |  |||||||||||||| ||||    
T  54175847 agtttgtttggatacaactatataaaagggattttttgttacaa----aattagttcaatcttttaaaccatattttctctctcctct 54175930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 2494158 - 2494080
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||    |||||| |||| | |||||||||||||||    
T  2494158 agtttgtttggatacaactatataaaagagattttttgttacaaaattaa----ttcaatattttaaatcatattttctctct 2494080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 13222193 - 13222272
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga-ttttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||    |||||||||||||||||||  ||||||||||||||    
T  13222193 agtttgtttagatacagttatataaaagtgatttttttgttacaa----aattagttcaatcttttgatccatattttctctct 13222272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 44886184 - 44886268
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgatttttt-gttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||| ||||||||||| |||||||||| |||||||| |||||||||||    ||||||||||||| | ||||||||||||||| ||||    
T  44886184 agtttttttggatacaactatataaaagggatttttttgttacaaaatt----agttcaatcttttaaatcatattttctctctcctct 44886268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 7238971 - 7238888
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||| || |||||||||||||    |||||||||||||||| |   ||||||||||||| ||||    
T  7238971 agtttgtttggatacaactatataaaagggaatttttgttacaaa----attagttcaatcttttaaacaatattttctctctcctct 7238888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 19298598 - 19298513
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgatttttt--gttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||| |||||| |||||||||| ||||||||  ||||||||||||    |||||||||||| | ||||||||||||||| ||||    
T  19298598 agtttgtttgaatacaactatataaaagggattttttttgttacaaaatta----gttcaatcttttaaatcatattttctctctcctct 19298513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 4780734 - 4780686
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||||    
T  4780734 agtttgtttggatacaactatataaaagagattttttattacaaaatta 4780686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 46255241 - 46255322
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgat-tttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||||||  |||||| ||||||| ||  |||| |||||||||    
T  46255241 agtttgtttgaatacaactatataaaagtgatctttttgttacaaaatt--ttagtttaatctttagatccataatttctctct 46255322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 49897434 - 49897386
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  49897434 agtttgtttggatacaactatataaaagggattatttgttacaaaatta 49897386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 637
Target Start/End: Original strand, 11125267 - 11125342
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctc 637  Q
    ||||||||||||||| |||||||||| ||||||| || ||||    ||||||||||||||||| || | |||||||||||    
T  11125267 tttgtttggatacaactatataaaagggatttttagtaacaa----aattagttcaatcttttaacccttattttctctc 11125342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 643
Target Start/End: Complemental strand, 39136136 - 39136054
Alignment:
Q  557 gtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||| ||||||||||| ||||||||| | ||||||||||||||     |||||||||||| ||| | ||||||||||||||| ||||    
T  39136136 gtttttttggatacaactatataaaaataattttttgttacaa----tattagttcaatcgtttaaatcatattttctctctcctct 39136054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 12928563 - 12928611
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||  |||| |||| |||||||||||||||||||||    
T  12928563 agtttgtttggatacatctataaaaaaatgattttttgttacaaaatta 12928611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 36889753 - 36889705
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    |||||||||||||||||   ||||||| |||||||||||||||||||||    
T  36889753 agtttgtttggatacaacggtataaaaatgattttttgttacaaaatta 36889705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 591
Target Start/End: Complemental strand, 24739147 - 24739112
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttt 591  Q
    |||||||||||||||||||||||||||| |||||||    
T  24739147 agtttgtttggatacaattatataaaagggattttt 24739112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 636
Target Start/End: Original strand, 41104012 - 41104087
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctct 636  Q
    ||||| ||| ||||||| |||||||||| || ||||||||||||||||    ||||||||||||| | |||||||||||||    
T  41104012 agtttatttcgatacaactatataaaag-gactttttgttacaaaatt----agttcaatcttttaaatcatattttctct 41104087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 574 - 604
Target Start/End: Original strand, 7238678 - 7238708
Alignment:
Q  574 tatataaaagtgattttttgttacaaaatta 604  Q
    |||||||||||||||||||||||||||||||    
T  7238678 tatataaaagtgattttttgttacaaaatta 7238708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 6046664 - 6046627
Alignment:
Q  563 ttggatacaattatataaaagtgattttttgttacaaa 600  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  6046664 ttggatacaattatataaaagagattttttgatacaaa 6046627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 27839044 - 27838995
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga-ttttttgttacaaaatta 604  Q
    ||||||||||||||||| |||| ||||| || ||||||||||||||||||    
T  27839044 agtttgtttggatacaactatacaaaagggatttttttgttacaaaatta 27838995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 643
Target Start/End: Complemental strand, 33803032 - 33802970
Alignment:
Q  577 ataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||| ||||||||||||||||||||    |||||||||||| |  |||||||||||||| ||||    
T  33803032 ataaaagcgattttttgttacaaaatta----gttcaatcttttaatacatattttctctctcctct 33802970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 50715690 - 50715772
Alignment:
Q  558 tttgtttggatacaattatataaaagtga-ttttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||  |||||||||| || |||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  50715690 tttgtttggatacacctatataaaagggatttttttgttacaa----aattagttcaatctttttaaatatattttctctctcctct 50715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 30668857 - 30668940
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    ||||||||||||||||| | ||||||||||||||| ||||    
T  30668857 agtttgtttggatacaattatataaacatgattttttgttacaa----aattagttcaatcttttaaatcatattttctctctcctct 30668940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 556 - 636
Target Start/End: Original strand, 30632216 - 30632292
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctct 636  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||    ||||||||||| | |||||||||||||    
T  30632216 agtttgtttggatacaactatataaaagagattttttgttacaaaattaa----ttcaatcttttaaatcatattttctct 30632292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 40662830 - 40662747
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||    ||||||||||| |||| | ||||||||||||||| ||||    
T  40662830 agtttgtttggatacaactatataaaagggattttttgttacaaa----attagttcaattttttaaatcatattttctctctcctct 40662747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 557 - 604
Target Start/End: Original strand, 15458960 - 15459007
Alignment:
Q  557 gtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  15458960 gtttgtttggatacaactatataaaagtgattttttgttacaaaatta 15459007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 636
Target Start/End: Original strand, 42676478 - 42676554
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctct 636  Q
    |||||||||| |||||| |||||||||| |||||||||||||||    ||||||||||||||||| | |||||||||||||    
T  42676478 agtttgtttgcatacaactatataaaagggattttttgttacaa----aattagttcaatcttttaaatcatattttctct 42676554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 30666274 - 30666352
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||     |||||||||||| | |||||||||||||||    
T  30666274 agtttgtttgaatacaaatatataaaagggattttttgttacaaaattt----gttcaatcttttaaatcatattttctctct 30666352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 638
Target Start/End: Complemental strand, 43968288 - 43968210
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||    |||||||||||||||| || | ||||||||||||    
T  43968288 agtttgtttggatacaacgatataaaagagattttttgttacaaa----attagttcaatcttttaacccttattttctctct 43968210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 563 - 637
Target Start/End: Complemental strand, 43968632 - 43968562
Alignment:
Q  563 ttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctc 637  Q
    |||||||||| |||||||||| ||||||||||||||||    |||||||||||||||| | ||||||||||||||    
T  43968632 ttggatacaactatataaaagggattttttgttacaaa----attagttcaatcttttaaatcatattttctctc 43968562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 603
Target Start/End: Original strand, 7495597 - 7495644
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatt 603  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  7495597 agtttgtttggatacaactatataaaagggattttttgttacaaaatt 7495644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 30620566 - 30620649
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||||| ||||||||| |||||||| |||||||    |||||||||||||||||   ||||||||||||||| ||||    
T  30620566 agtttgtttcgatacaactatataaaaatgatttttggttacaa----aattagttcaatcttttatatcatattttctctctcctct 30620649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 30623187 - 30623270
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||||| ||||||||| |||||||| |||||||    |||||||||||||||||   ||||||||||||||| ||||    
T  30623187 agtttgtttcgatacaactatataaaaatgatttttggttacaa----aattagttcaatcttttatatcatattttctctctcctct 30623270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 14787216 - 14787265
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaattaatt 607  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  14787216 tttgtttggatacaactatctaaaagagattttttgttacaaaattaatt 14787265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 34454178 - 34454256
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||  |||||||||| |||||||| ||||||||||||||     ||| |||||| |||||||||||||||    
T  34454178 agtttgtttggatacatctatataaaagcgattttttcttacaaaattaattt----aatattttgattcatattttctctct 34454256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 3197004 - 3197052
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  3197004 agtttgttttgatacagctatataaaagtgattttttgttacaaaatta 3197052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 39844292 - 39844244
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||||||    
T  39844292 agtttgtttggatacaactatataaaagggattttctgttacaaaatta 39844244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 7074971 - 7074888
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||| |||||||| ||||||||| |||||||||| |||||||||| |||    ||| |||| | ||||||||||| ||||||||    
T  7074971 agtttgttaggatacaactatataaaaatgattttttgatacaaaattagtta----aattttttaaatcatattttctgtcttctct 7074888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 21479419 - 21479468
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgatttttt-gttacaaaatta 604  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||||||||    
T  21479419 agtttgtttggatacaactatataaaagggattttttcgttacaaaatta 21479468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 1826771 - 1826852
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||| ||  |||||||||| |||||||| ||||||    ||||||||||||||||  | ||||||||||||||| ||||    
T  1826771 tttgtttggatccagctatataaaagcgattttttattacaa----aattagttcaatctttaaattcatattttctctctcctct 1826852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 21479222 - 21479270
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| || |||||||  |||||||||||||||||||    
T  21479222 agtttgtttggatacaactacataaaaggcattttttgttacaaaatta 21479270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 36950408 - 36950360
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||| ||| |||||||||  ||||||||||||||||||||    
T  36950408 agtttgtttggattcaactatataaaatggattttttgttacaaaatta 36950360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 41145112 - 41145160
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||||| | ||||||||||||||| ||| |||||||    
T  41145112 agtttgtttggatacaattttttaaaagtgattttttattataaaatta 41145160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 21696484 - 21696561
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||    ||||||||||||||| |||||||||||||||    
T  21696484 agtttgtttggatacaactatataaaag-gattttttgttacaaaatt----agttcaatcttttgaatcatattttctctct 21696561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 38319956 - 38320039
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    ||||||||||||||||| |  |||||||||| ||| ||||    
T  38319956 agtttgtttggatacaactatataaaagagattttttgttacaa----aattagttcaatcttttaaaccatattttctatctcctct 38320039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 562 - 638
Target Start/End: Complemental strand, 26151243 - 26151171
Alignment:
Q  562 tttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||  |||||||||| ||||||||||||| ||||||    ||||||||||||||||| ||||||||||||    
T  26151243 tttggatacatctatataaaagagattttttgttactaaatta----gttcaatcttttgactcgtattttctctct 26151171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 26970496 - 26970413
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||    ||||||||||| |||| | ||||||||| ||||| ||||    
T  26970496 agtttgtttggatacaactatatgaaaatgattttttgttacaaa----attagttcaatgttttaaatcatattttatctctcctct 26970413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 30121283 - 30121366
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||| |||||| ||||||||||  ||||||||||||||    ||||||||||||||||| | | ||||||||||||| ||||    
T  30121283 agtttgtttgaatacaactatataaaaggaattttttgttacaa----aattagttcaatcttttaaattatattttctctctcctct 30121366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 24689351 - 24689436
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga--ttttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| |||||||||| ||  |||||||||||||    ||||||||||||||||| | | |||||||||| |||||||    
T  24689351 agtttgtttggatacaactatataaaagagattttttttgttacaa----aattagttcaatcttttaaataatattttctcccttctct 24689436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 557 - 643
Target Start/End: Complemental strand, 33858076 - 33857994
Alignment:
Q  557 gtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||| ||||||||||| |||||||||| |||||||||||| ||    |||||||| |||||||||| ||||||||| ||||| ||||    
T  33858076 gtttatttggatacaactatataaaagagattttttgttaaaa----aattagtttaatcttttgaatcatattttatctctgctct 33857994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 563 - 609
Target Start/End: Complemental strand, 23809007 - 23808961
Alignment:
Q  563 ttggatacaattatataaaagtgattttttgttacaaaattaattag 609  Q
    |||||||||| |||||||||| ||||||| |||||||||||||||||    
T  23809007 ttggatacaactatataaaagggatttttcgttacaaaattaattag 23808961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 24688868 - 24688785
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||| | |||||| ||||||||| |||||||||||||| |    ||||||||||||||||| |  |||||||||||||| ||||    
T  24688868 agtttgttcgaatacaactatataaaaatgattttttgttacca----aattagttcaatcttttaaaccatattttctctctcctct 24688785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 26246706 - 26246660
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||||    
T  26246706 tttgtttggatacaactttataaaagagattttttgttacaaaatta 26246660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 643
Target Start/End: Original strand, 26970742 - 26970817
Alignment:
Q  564 tggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||||||||| || ||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  26970742 tggatacaattatataaaagggactttttgttacaa----aattagttcaatcttttaaacaatattttctctctcctct 26970817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 30121998 - 30121923
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctc 635  Q
    ||||||||||||||||| |||||||||   |||||||||||||||    |||||||||||||||| |  |||||||||||    
T  30121998 agtttgtttggatacaactatataaaaagaattttttgttacaaa----attagttcaatcttttaatccatattttctc 30121923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 5801125 - 5801076
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga-ttttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  5801125 agtttgtttggatacaactatataaaagagatttttttgttacaaaatta 5801076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 10283381 - 10283333
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||| ||||||  |||||||||| ||||||||||||||||||||    
T  10283381 agtttgtttcgatacagctatataaaagggattttttgttacaaaatta 10283333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 24162255 - 24162207
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||| ||  |||||||||| ||||||||||||||||||||    
T  24162255 agtttgtttggatgcatctatataaaagagattttttgttacaaaatta 24162207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 40261921 - 40261969
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||  | ||||||||||||||||||    
T  40261921 agtttgtttggatacaactatataaaaagggttttttgttacaaaatta 40261969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 46897952 - 46898000
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    |||||||||||||| || || ||||||| ||||||||||||||||||||    
T  46897952 agtttgtttggatataactagataaaagggattttttgttacaaaatta 46898000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 558 - 638
Target Start/End: Complemental strand, 47222618 - 47222541
Alignment:
Q  558 tttgtttggatacaattatataaaa-gtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    |||||||||||| || ||||||||| | ||||||||||||||||||||    |||||||||||| |  ||||||||||||||    
T  47222618 tttgtttggatataactatataaaaagagattttttgttacaaaatta----gttcaatcttttaaaccatattttctctct 47222541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 643
Target Start/End: Original strand, 29854700 - 29854772
Alignment:
Q  567 atacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||| |||||||||| ||||||| |||||||    |||||||||||| ||||||  |||||||||||||| ||||    
T  29854700 atacaactatataaaagagatttttcgttacaa----aattagttcaatattttgaaccatattttctctctcctct 29854772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 566 - 604
Target Start/End: Complemental strand, 21696863 - 21696825
Alignment:
Q  566 gatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  21696863 gatacaactatataaaagagattttttgttacaaaatta 21696825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 576 - 643
Target Start/End: Original strand, 31278218 - 31278281
Alignment:
Q  576 tataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||||||| |||||    |||||||| ||| |||| | ||||||||||||||||||||    
T  31278218 tataaaagtgattttttgatacaa----aattagttaaattttttaaatcatattttctctcttctct 31278281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 601
Target Start/End: Complemental strand, 18984759 - 18984714
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaa 601  Q
    ||||||||||||||||| ||||||||||  |||||| |||||||||    
T  18984759 agtttgtttggatacaactatataaaagacatttttcgttacaaaa 18984714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 601
Target Start/End: Complemental strand, 18989574 - 18989529
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaa 601  Q
    ||||||||||||||||| ||||||||||  |||||| |||||||||    
T  18989574 agtttgtttggatacaactatataaaagacatttttcgttacaaaa 18989529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 601
Target Start/End: Complemental strand, 18999388 - 18999343
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaa 601  Q
    ||||||||||||||||| ||||||||||  |||||| |||||||||    
T  18999388 agtttgtttggatacaactatataaaagacatttttcgttacaaaa 18999343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 35526489 - 35526540
Alignment:
Q  556 agtttgtttggatacaattatataaaagtga---ttttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||| ||   ||||||||||||||||||    
T  35526489 agtttgtttggatacaactatataaaagggatttttttttgttacaaaatta 35526540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 2258781 - 2258698
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||    |||||||||||||||| | ||||||||||||||| ||||    
T  2258781 agtttgttttgatacaactatataaaagagattttttgttacaaa----attagttcaatcttttaaatcatattttctctctcctct 2258698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 562 - 643
Target Start/End: Complemental strand, 7204872 - 7204795
Alignment:
Q  562 tttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||| |||||||||| ||||||||||||||||    |||||||||||||||| | ||||||||| ||||| ||||    
T  7204872 tttggatacaactatataaaagagattttttgttacaaa----attagttcaatcttttaaatcatattttttctctcctct 7204795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 607
Target Start/End: Complemental strand, 14094138 - 14094087
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaatt 607  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||||||||    
T  14094138 agtttgtttggatacaactatataaaagcgattttttgttataaaattaatt 14094087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 21980920 - 21981003
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  21980920 agtttgtttggatacaactatataaaaggaattttttgttacaa----aattagttcaatcttttaaaaaatattttctctctcctct 21981003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 26001329 - 26001281
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||| ||||||||||| |||||||||| |||||||||||| |||||||    
T  26001329 agtttatttggatacaactatataaaagagattttttgttaaaaaatta 26001281  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 21092806 - 21092769
Alignment:
Q  311 acttttaaaagtattgcttccgtttgttacatcttttt 348  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  21092806 acttttaaaagtattgcatccgtttgttacaacttttt 21092769  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 33438677 - 33438754
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    |||||||||| |||||| |||||||||| ||||||| |||| ||||||    ||||||||||||| |  ||||||||||||||    
T  33438677 agtttgtttgaatacaactatataaaagagattttt-gttaaaaaatt----agttcaatcttttaaaccatattttctctct 33438754  T

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Target: scaffold0016 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 557 - 643
Target Start/End: Complemental strand, 106151 - 106069
Alignment:
Q  557 gtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||||| |||||||||  ||||||||||||||||    |||||||||||||||| | ||||||||||||||| ||||    
T  106151 gtttgtttggatacaactatataaaaaggattttttgttacaaa----attagttcaatcttttaaatcatattttctctctcctct 106069  T

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Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 205258 - 205340
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||||| ||||||||||  ||||||||||||||||||    ||||||||||||| |   ||||||||||||| ||||    
T  205258 agtttgtttagatacaactatataaaaga-attttttgttacaaaatt----agttcaatcttttaaacaatattttctctctcctct 205340  T

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Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 43326035 - 43325954
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||||||||||||||| ||||||||||||||||    ||||||| |||||||| |  |||||||||||||| ||||    
T  43326035 tttgtttggatacaattatataaaagggattttttgttacaaa----attagtttaatcttttaaaacatattttctctctcctct 43325954  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 24686204 - 24686287
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||||  |||||||||| |||||||||||||||    ||||||||||||||||| |  |||||||||||||| ||||    
T  24686204 agtttgtttggatacagctatataaaagcgattttttgttacaa----aattagttcaatcttttaatccatattttctctctcctct 24686287  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 638
Target Start/End: Original strand, 49243790 - 49243868
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctct 638  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    ||||||||||||||||| |   |||||||||||||    
T  49243790 agtttgtttggatacaactatataaaagggattttttgttacaa----aattagttcaatcttttaaaagatattttctctct 49243868  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 43114756 - 43114840
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgatttttt-gttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    |||||||||||||| || |||||||||| |||||||| ||| |||||||    |||||||||||||||| |||||||||||| ||||||    
T  43114756 agtttgtttggatataactatataaaagagatttttttgttgcaaaatt----agttcaatcttttgacccatattttctcttttctct 43114840  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 637
Target Start/End: Original strand, 6318922 - 6318997
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctc 637  Q
    ||||||||||| ||| |||||||||| |||||||||||||||    ||||||||||||||||| |  |||||||||||||    
T  6318922 tttgtttggatgcaactatataaaagggattttttgttacaa----aattagttcaatcttttaatccatattttctctc 6318997  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 6844474 - 6844557
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||    |||||||| |||||||| | | ||||||||||||| ||||    
T  6844474 agtttgtttggatgcaactatataaaagagattttttgttacaa----aattagtttaatcttttaaataatattttctctctcctct 6844557  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 48738506 - 48738589
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  48738506 agtttgtttagatacaactgtataaaagtgattttttgttacaa----aattagttcaatcttttaaacaatattttctctctcctct 48738589  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 33674993 - 33675042
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaattaatt 607  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  33674993 tttgattggatacaactatataaaagagattttttgttacaaaattaatt 33675042  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 643
Target Start/End: Complemental strand, 47795131 - 47795054
Alignment:
Q  562 tttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||| |||||||||  ||||||||||||||||    |||||||||| ||||| | ||||||||||||||| ||||    
T  47795131 tttggatacaaatatataaaatggattttttgttacaaa----attagttcaaacttttaaatcatattttctctctcctct 47795054  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 643
Target Start/End: Complemental strand, 47795514 - 47795431
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||| | |||||||||| ||||||||||||||||    ||||| |||||||||| | | ||||||||||||| ||||    
T  47795514 agtttgttttgatacgactatataaaagggattttttgttacaaa----attagctcaatcttttaaattatattttctctctcctct 47795431  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Original strand, 11981724 - 11981771
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||| |||||||||| || |||||||||||||||||    
T  11981724 agtttgtttggatacaactatataaaaggga-tttttgttacaaaatta 11981771  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 43115039 - 43114991
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaatta 604  Q
    ||||||||||||||||  |||||||||  ||||||||||||||||||||    
T  43115039 agtttgtttggatacagctatataaaatcgattttttgttacaaaatta 43114991  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 42834920 - 42835001
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||  | |||||||||| |||||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  42834920 agtttgtttggata--actatataaaagggattttttgttacaa----aattagttcaatcttttaatctatattttctctctcctct 42835001  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 17054238 - 17054321
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||||| |||||||||   ||||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  17054238 agtttgtttcgatacaactatataaaatgaattttttgttacaa----aattagttcaatcttttaaacaatattttctctctcctct 17054321  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 47795947 - 47796030
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||| ||||| | ||||||||||  ||||||||||||||    |||||| |||||||||| | | ||||||||||||| ||||    
T  47795947 agtttgttttgatacgactatataaaaggaattttttgttacaa----aattagctcaatcttttaaattatattttctctctcctct 47796030  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 643
Target Start/End: Original strand, 39842797 - 39842859
Alignment:
Q  577 ataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||| |||||||||||| ||||||    ||||||||||||| | ||||||||||||||| ||||    
T  39842797 ataaaagggattttttgttagaaaatt----agttcaatcttttaaatcatattttctctctcctct 39842859  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 150269 - 150188
Alignment:
Q  558 tttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||| |||||||||||||| |||||||| | ||||    ||||||||||||||||| |  |||||||||||||| ||||    
T  150269 tttgtttggatgcaattatataaaagggattttttataacaa----aattagttcaatcttttaaaccatattttctctctcctct 150188  T

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Target: scaffold0224 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 22001 - 22082
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctct 643  Q
    ||||||||||||||  | |||||||||| |||||||||||||||    ||||||||||||||||| |   ||||||||||||| ||||    
T  22001 agtttgtttggata--actatataaaagggattttttgttacaa----aattagttcaatcttttaatctatattttctctctcctct 22082  T

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Target: scaffold0625 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 601
Target Start/End: Original strand, 7187 - 7232
Alignment:
Q  556 agtttgtttggatacaattatataaaagtgattttttgttacaaaa 601  Q
    ||||||||||||||||| ||||||||||  |||||| |||||||||    
T  7187 agtttgtttggatacaactatataaaagacatttttcgttacaaaa 7232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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