View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326R-Insertion-3 (Length: 191)

Name: NF1326R-Insertion-3
Description: NF1326R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326R-Insertion-3
NF1326R-Insertion-3
[»] chr4 (12 HSPs)
chr4 (7-191)||(7615224-7615408)
chr4 (80-191)||(7628668-7628779)
chr4 (7-191)||(7637038-7637225)
chr4 (7-187)||(7606210-7606390)
chr4 (7-80)||(7656209-7656282)
chr4 (133-191)||(7633490-7633548)
chr4 (7-76)||(39070933-39071002)
chr4 (12-73)||(39087996-39088057)
chr4 (21-73)||(39097682-39097734)
chr4 (14-73)||(39091389-39091448)
chr4 (7-63)||(39082337-39082393)
chr4 (136-171)||(8999046-8999081)
[»] chr7 (5 HSPs)
chr7 (21-191)||(8936062-8936223)
chr7 (27-151)||(8941738-8941862)
chr7 (7-191)||(8913554-8913734)
chr7 (147-191)||(8938838-8938882)
chr7 (133-187)||(8919083-8919137)
[»] scaffold0190 (1 HSPs)
scaffold0190 (7-72)||(4436-4501)
[»] chr3 (2 HSPs)
chr3 (7-77)||(40147440-40147510)
chr3 (7-77)||(8102429-8102499)
[»] chr8 (1 HSPs)
chr8 (12-73)||(15745020-15745081)
[»] chr6 (1 HSPs)
chr6 (30-74)||(6500496-6500540)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 7615224 - 7615408
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttttggctatgtt 106  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||| || |||||    
T  7615224 cactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccacggagaactgctaatggctatgaaattattttttgccatgtt 7615323  T
Q  107 -ggttatcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttg 191  Q
     || || ||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  7615324 aggata-cctagcaaagcttggatttcttaaccaagactcgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttg 7615408  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 7628668 - 7628779
Alignment:
Q  80 gactaagaaattgtttttggctatgttggttatcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaa 179  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628668 gactaagaaattgtttttggctatgttggttatcctaaggaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaa 7628767  T
Q  180 gcaattaacttg 191  Q
    ||||||||||||    
T  7628768 gcaattaacttg 7628779  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 7637038 - 7637225
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttttggctatgtt 106  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  || |||||| |||||  | |||||    
T  7637038 cactacgaactgccagaggctttccccatccaaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattttttaccatgtt 7637137  T
Q  107 ggtt---atcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttg 191  Q
      |    | ||||| ||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  7637138 cttagcaagcctaaaaaagcttggatttcttaaccaagactcgtaatgattcttcaacttctcatcagtgtgtgaagcaattaacttg 7637225  T

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Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 7606210 - 7606390
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttttggctatgtt 106  Q
    |||||||||| || | ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || |||||| || ||||  ||| |    
T  7606210 cactacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattattggacatgct 7606309  T
Q  107 ggttatcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaa 187  Q
     |  | ||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  7606310 agcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaattaa 7606390  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 7656282 - 7656209
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatg 80  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  7656282 cactacgaactgccacaggctttccccatccaaaatcattaccataaacatcaaactttggagaactgctaatg 7656209  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 7633490 - 7633548
Alignment:
Q  133 ttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttg 191  Q
    ||||||||||||| |||||||| |||| | |||||| ||||||||||||||||||||||    
T  7633490 ttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaattaacttg 7633548  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 39070933 - 39071002
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgct 76  Q
    |||| ||||||||||| ||||||||||| || |||||||| ||| ||||||||||||  |||||||||||    
T  39070933 cacttcgaaccgccactggctttccccagccaaaatcattgccaaaaacatcaaacctcggagaactgct 39071002  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 39087996 - 39088057
Alignment:
Q  12 cgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaact 73  Q
    |||||| | |||||||| ||||| || ||||||||| ||||||||||||||| |||||||||    
T  39087996 cgaacccctacaggcttcccccaaccaaaatcattatcataaacatcaaaccttggagaact 39088057  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 39097682 - 39097734
Alignment:
Q  21 acaggctttccccatccgaaatcattaccataaacatcaaaccatggagaact 73  Q
    |||||||| ||||| || || |||||||||||||||||||||| |||||||||    
T  39097682 acaggcttaccccaaccaaagtcattaccataaacatcaaaccttggagaact 39097734  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 39091389 - 39091448
Alignment:
Q  14 aaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaact 73  Q
    |||| |||||||||| ||||| || ||||||||||| |||||||||||||  ||||||||    
T  39091389 aacccccacaggcttcccccaaccaaaatcattaccgtaaacatcaaacctcggagaact 39091448  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 39082337 - 39082393
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaacc 63  Q
    |||| |||||| | || ||||| ||||| || |||||||||||||||||||||||||    
T  39082337 cacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacatcaaacc 39082393  T

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Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 8999046 - 8999081
Alignment:
Q  136 accaagactcgtagtgattcttcaacatctcatcag 171  Q
    ||||||||||||| ||||||||||||||| ||||||    
T  8999046 accaagactcgtattgattcttcaacatcgcatcag 8999081  T

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Target: chr7 (Bit Score: 83; Significance: 1e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 8936223 - 8936062
Alignment:
Q  21 acaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttttggctatgttggttatcctaagaa 120  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||| |  |||||  |         ||    
T  8936223 acaggctttccccatccaaaatcattaccataaacatcaaaccacggagaactgctaatggctatgaaattcttttttggcatgttact---------aa 8936133  T
Q  121 agcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttg 191  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||    
T  8936132 agcttggatttcttaaccaagactcatagtgattcttcaacttctcatcagtgtgtaaagcaattaacttg 8936062  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 8941862 - 8941738
Alignment:
Q  27 tttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttttggctatgttggttatcctaagaaagcttg 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| || ||||  ||| | |  | ||||| ||||||||    
T  8941862 tttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggataagaaattattattggacatgctagcaaccctaacaaagcttg 8941763  T
Q  127 gattttttaaccaagactcgtagtg 151  Q
    ||||| ||||||||||||| |||||    
T  8941762 gatttcttaaccaagactcatagtg 8941738  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 8913734 - 8913554
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgctaatgactaagaaattgtttttggctatgtt 106  Q
    |||||||||| |||||||||||||||||||       ||||||||||||||||||| |||||||||| ||||||  || ||||||  ||||  | |||||    
T  8913734 cactacgaactgccacaggctttccccatc-------attaccataaacatcaaactatggagaactactaatggatatgaaattagtttttaccatgtt 8913642  T
Q  107 ggtt---atcctaagaaagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttg 191  Q
      |    | ||||| ||||||||||||| |||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  8913641 cttagcaagcctaacaaagcttggatttcttaaccaagactcgtaatgattcttcaacttctcgtcagcgtgtgaagcaattaacttg 8913554  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 8938882 - 8938838
Alignment:
Q  147 tagtgattcttcaacatctcatcagtgtgtgaagcaattaacttg 191  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  8938882 tagtgattcttcaacttctcatccgtgtgtgaagcaattaacttg 8938838  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 8919137 - 8919083
Alignment:
Q  133 ttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaa 187  Q
    ||||||||||||| |||||||| |||| | |||||| ||||||||||||||||||    
T  8919137 ttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaattaa 8919083  T

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Target: scaffold0190 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 4436 - 4501
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaac 72  Q
    |||| |||||| ||||||| |||||||| || |||||||||||||||||||||||||| |||||||    
T  4436 cacttcgaacccccacaggttttccccaaccaaaatcattaccataaacatcaaaccaaggagaac 4501  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 40147510 - 40147440
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgcta 77  Q
    |||| ||||| |||||||| | ||||||||| |||||||||||||||||||||||||| || ||| |||||    
T  40147510 cactgcgaactgccacaggttctccccatccaaaatcattaccataaacatcaaaccacggggaattgcta 40147440  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 8102429 - 8102499
Alignment:
Q  7 cactacgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaactgcta 77  Q
    |||| ||||| ||||| || ||||||||||| |||| ||| |||||||||||||||||  | |||||||||    
T  8102429 cactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaaccactgggaactgcta 8102499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 15745081 - 15745020
Alignment:
Q  12 cgaaccgccacaggctttccccatccgaaatcattaccataaacatcaaaccatggagaact 73  Q
    |||||| ||||||| |||||||| || |||||||| ||||||||||||||||| || |||||    
T  15745081 cgaacccccacaggttttccccaaccaaaatcattgccataaacatcaaaccagggtgaact 15745020  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 6500496 - 6500540
Alignment:
Q  30 ccccatccgaaatcattaccataaacatcaaaccatggagaactg 74  Q
    |||||||| |||||||||||||||| ||||||||| || ||||||    
T  6500496 ccccatccaaaatcattaccataaatatcaaaccacggggaactg 6500540  T

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