View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326R-Insertion-7 (Length: 520)
Name: NF1326R-Insertion-7
Description: NF1326R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326R-Insertion-7 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 183 - 520
Target Start/End: Original strand, 1696050 - 1696387
Alignment:
| Q |
183 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaattgattacgctggtgagaagaacagtc |
282 |
Q |
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| T |
1696050 |
atagcataacaaattacgctatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaattgattacgctggtgagaagaacagtc |
1696149 |
T |
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| Q |
283 |
caaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactg |
382 |
Q |
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| T |
1696150 |
caaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactg |
1696249 |
T |
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| Q |
383 |
aactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaaataaactga |
482 |
Q |
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| T |
1696250 |
aactaaaaacttccaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataaactga |
1696349 |
T |
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| Q |
483 |
aatgatactgaaaagagaagaagaagtgattaacaaac |
520 |
Q |
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| T |
1696350 |
aatgatactgaaaagagaagaagaagtgattaacaaac |
1696387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 202 - 484
Target Start/End: Original strand, 1685520 - 1685805
Alignment:
| Q |
202 |
tatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaattgattacgctggtgagaagaacagtccaaacgagataacattccc |
301 |
Q |
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| T |
1685520 |
tatattcacgtaaacaacaaaacaaagtaataaatagagaaagagagagtttaattagttaccctggtgcgaagaacagtccaaacgagataacattccc |
1685619 |
T |
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| Q |
302 |
tgcattcaaa-tttcacaaaa--atcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactgaactaaagacttctaa |
398 |
Q |
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| T |
1685620 |
ttcattcaaaatttcagaaaaaaatcaatcagaaacatgtatgattaatcgattaacacaaaaagctaaaatcaatcgtaactgaactaaaaacttcaaa |
1685719 |
T |
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| Q |
399 |
aatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaaataaactgaaa |
484 |
Q |
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| T |
1685720 |
aatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataaactgaaa |
1685805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 1695909 - 1695981
Alignment:
| Q |
51 |
gtgataaactatgattatgtcagactaatcgttgatctaaatatagctggtatactaaggttgattctttcat |
123 |
Q |
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| T |
1695909 |
gtgataaactatgattatgtcagactcatcgttgatctaaatatagcaggtatactaaggttgattctttcat |
1695981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 1685404 - 1685447
Alignment:
| Q |
78 |
atcgttgatctaaatatagctggtatactaaggttgattctttc |
121 |
Q |
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| T |
1685404 |
atcgttgatctaaatatagctggtatacttaggttgattctttc |
1685447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 520
Target Start/End: Original strand, 1685799 - 1685830
Alignment:
| Q |
489 |
actgaaaagagaagaagaagtgattaacaaac |
520 |
Q |
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| T |
1685799 |
actgaaaagagaagaagaagtgattaacaaac |
1685830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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