View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326R-Insertion-8 (Length: 560)

Name: NF1326R-Insertion-8
Description: NF1326R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326R-Insertion-8
NF1326R-Insertion-8
[»] chr8 (20 HSPs)
chr8 (13-560)||(6352322-6352872)
chr8 (81-263)||(6424336-6424518)
chr8 (448-559)||(7459158-7459269)
chr8 (145-260)||(7459418-7459533)
chr8 (145-258)||(6363421-6363534)
chr8 (449-560)||(6363261-6363372)
chr8 (144-261)||(6370314-6370431)
chr8 (145-265)||(6332158-6332278)
chr8 (460-552)||(6370131-6370223)
chr8 (121-215)||(6274828-6274922)
chr8 (471-560)||(6274585-6274674)
chr8 (145-262)||(6289273-6289390)
chr8 (471-560)||(6331969-6332058)
chr8 (471-560)||(6424166-6424255)
chr8 (145-265)||(6321656-6321773)
chr8 (9-62)||(6424519-6424572)
chr8 (471-557)||(6321467-6321553)
chr8 (9-62)||(6363628-6363681)
chr8 (469-545)||(6288852-6288928)
chr8 (519-551)||(6410267-6410299)


Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 560
Target Start/End: Complemental strand, 6352872 - 6352322
Alignment:
Q  13 ccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgttac------acaaaaataaaactaagactaatttgtaaacattatgttattt 106  Q
    |||||||||||||||||||| ||||||||   ||||||||||||||||||       | ||||||||||||||||||| |||||||||||||||||||||    
T  6352872 ccacacatcatcaaaaaactttcggtaaagctaatagtttaactttgttaagaaattaaaaaaataaaactaagactattttgtaaacattatgttattt 6352773  T
Q  107 ttataattggtgacattattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccata 206  Q
    || |||||||||||||||||||||||||  |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  6352772 ttgtaattggtgacattattgcttgctaaatttaatacaggagtttccaccaaagagcaagctagatagccaaaaatttggtgataataccagcaccata 6352673  T
Q  207 accaaagaaaacttggagccaaacatgggcggggtcactgtagaacaggtaatgacatatttgattagttctattattctttttccaaagtggcgttcgt 306  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||    |||||||||||||||||||||    
T  6352672 accaaagaaaacttggagccaaacatgggtggggtcaccgtagaacaggtaatgacatatttgatcagttctatt----tttttccaaagtggcgttcgt 6352577  T
Q  307 gaaattcgtccgggagaaaatttgaaatctgtccctctaggttataaggtcgactttaaccactgggttgacacctcatggacttggttcaattaata-t 405  Q
    ||| |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |    
T  6352576 gaatttcgtccgggagaaaatttgaaatctatcccttgaggttataaggtcgactttaaccactgggttgacacctcatggacttagtttgattaatatt 6352477  T
Q  406 tttctccatgattgaannnnnnnnattcaagtaaaccaccgaagctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgat 505  Q
    ||||||||||||||||        ||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  6352476 tttctccatgattgaattttttttattcaagtaaaccacagtagctaaattttattttgtcatacaggctatccaagacaatagattgtacatacttgat 6352377  T
Q  506 caccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaagg 560  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  6352376 caccacgacccactctttccatatttgaggaaaataaatgcaaccgagacaaagg 6352322  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 81 - 263
Target Start/End: Complemental strand, 6424518 - 6424336
Alignment:
Q  81 actaatttgtaaacattatgttatttttataattggtgacattattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaaa 180  Q
    |||| |||||||||| |||||||||| |||||||||| |||||||||||||  ||  |||||||||||||| ||||  | ||||||||||||||||||||    
T  6424518 actattttgtaaacaatatgttatttctataattggtaacattattgcttgaaacaattaattcaggagttcccacataagagcaagctagatagccaaa 6424419  T
Q  181 tatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcactgtagaacaggtaatgaca 263  Q
     || ||| ||||| ||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||    
T  6424418 aatatggagataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgaca 6424336  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 448 - 559
Target Start/End: Complemental strand, 7459269 - 7459158
Alignment:
Q  448 agctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgca 547  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |  ||  ||||||||||||||| ||||||||||    
T  7459269 agctaaattttattttgtcatacaggctatccaaaacaataaattgtacatacttgatcaccacgatctactaattccatatttgaggagaataaatgca 7459170  T
Q  548 actgagacaaag 559  Q
    ||||||||||||    
T  7459169 actgagacaaag 7459158  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 7459533 - 7459418
Alignment:
Q  145 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 244  Q
    ||||||||||||||| ||||||| |||||||| || ||| |||||||||||||||||| |||||||  ||  ||||||||||||||||||| ||||||||    
T  7459533 aggagtttccaccaaagagcaagttagatagcaaactatatggtgataataccagcacaataaccattgatcacttggagccaaacatgggaggggtcac 7459434  T
Q  245 tgtagaacaggtaatg 260  Q
     |||||||||||||||    
T  7459433 agtagaacaggtaatg 7459418  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 6363534 - 6363421
Alignment:
Q  145 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 244  Q
    ||||||||||||||| ||||||| |||||| |||| | |||||| |||||||||||||||||||||||||| | ||| ||||||||||||  ||||||||    
T  6363534 aggagtttccaccaaagagcaagttagatacccaactctttggtaataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcac 6363435  T
Q  245 tgtagaacaggtaa 258  Q
     |||||||||||||    
T  6363434 ggtagaacaggtaa 6363421  T

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Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 449 - 560
Target Start/End: Complemental strand, 6363372 - 6363261
Alignment:
Q  449 gctaaatttaattttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaa 548  Q
    ||||||||| |||||||   |||||||||||| || |||| ||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  6363372 gctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaa 6363273  T
Q  549 ctgagacaaagg 560  Q
    | ||||| ||||    
T  6363272 ccgagactaagg 6363261  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 6370431 - 6370314
Alignment:
Q  144 caggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtca 243  Q
    |||||| |||||  || ||||||| |||||||  || | | |||||||||||||||||| |||||||||||| |||||||||||||||||   |||||||    
T  6370431 caggagcttccaagaaagagcaagttagatagtaaactctatggtgataataccagcacaataaccaaagaacacttggagccaaacatgaatggggtca 6370332  T
Q  244 ctgtagaacaggtaatga 261  Q
    | ||| || |||||||||    
T  6370331 cagtaaaagaggtaatga 6370314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 6332278 - 6332158
Alignment:
Q  145 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 244  Q
    ||||||| ||||||| |||||||||||||| |||| | |  ||||||||||| ||||| |||||| ||||| | ||  ||| ||||||||  ||||||||    
T  6332278 aggagttcccaccaaagagcaagctagatacccaactctacggtgataatacgagcacaataaccgaagaacagttacagctaaacatggatggggtcac 6332179  T
Q  245 tgtagaacaggtaatgacata 265  Q
    ||||||| | |||||||||||    
T  6332178 tgtagaagaagtaatgacata 6332158  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 552
Target Start/End: Complemental strand, 6370223 - 6370131
Alignment:
Q  460 ttttgtcatacaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactga 552  Q
    |||||||  |||||||||| || ||||||||||||||||||| |||||||||||  |  ||| |||||||||||||||| |||||| ||||||    
T  6370223 ttttgtctaacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactga 6370131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 6274922 - 6274828
Alignment:
Q  121 attattgcttgctacctttaattcaggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaa 215  Q
    ||||||||||| ||  ||||||  |||| |||||||||| ||||||||||||||| ||| | |  ||||||||||||||||| ||||||||||||    
T  6274922 attattgcttgatatatttaatgtaggaatttccaccaaagagcaagctagataggcaactctacggtgataataccagcacaataaccaaagaa 6274828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 560
Target Start/End: Complemental strand, 6274674 - 6274585
Alignment:
Q  471 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaagg 560  Q
    |||||||||||| ||| | |||||||||||| ||| |||||||| || | | ||||||| ||||||||||||||||| |||| |||||||    
T  6274674 aggctatccaaaccaacaaattgtacatacttgattaccacgactcgttatatccatatctgaggaaaataaatgcagctgatacaaagg 6274585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 6289390 - 6289273
Alignment:
Q  145 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 244  Q
    ||||||| ||||||| |||||||||| ||||||||   |  ||||||||||| ||||| |||||||||||| | ||| ||| ||| ||||  ||||||||    
T  6289390 aggagttcccaccaaagagcaagctaaatagccaagactacggtgataatacgagcacaataaccaaagaacagttgcagctaaatatggatggggtcac 6289291  T
Q  245 tgtagaacaggtaatgac 262  Q
    ||||||| | ||||||||    
T  6289290 tgtagaagaagtaatgac 6289273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 560
Target Start/End: Complemental strand, 6332058 - 6331969
Alignment:
Q  471 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaagg 560  Q
    |||||||||||||||| ||  | |||||||| |||||||| |||||  | |||||||||||||||||||||||  ||||||| |||||||    
T  6332058 aggctatccaaaacaacaggctttacatacttgatcaccatgacccaatatttccatatttgaggaaaataaactcaactgatacaaagg 6331969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 560
Target Start/End: Complemental strand, 6424255 - 6424166
Alignment:
Q  471 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaaagg 560  Q
    |||||||||||||||| | ||||||||| || |||||| | |||    | | ||||||||||||||||||||||||||||||||||||||    
T  6424255 aggctatccaaaacaacaaattgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgcaactgagacaaagg 6424166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 6321773 - 6321656
Alignment:
Q  145 aggagtttccaccaacgagcaagctagatagccaaatatttggtgataataccagcaccataaccaaagaaaacttggagccaaacatgggcggggtcac 244  Q
    ||||||| ||||||| |||||||||| ||| || | |||  ||||||||||| ||||| |||||| ||||| | || |||| ||||||||  ||||||||    
T  6321773 aggagttcccaccaaagagcaagctaaata-ccgattat--ggtgataatacgagcacaataaccgaagaacagttagagctaaacatggatggggtcac 6321677  T
Q  245 tgtagaacaggtaatgacata 265  Q
    ||||||| | |||||||||||    
T  6321676 tgtagaagaagtaatgacata 6321656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 6424572 - 6424519
Alignment:
Q  9 gaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgtta 62  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||| | ||||||    
T  6424572 gaatccacacatcatcaaaaaactcacggtaaagttaatagtttagcattgtta 6424519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 557
Target Start/End: Complemental strand, 6321553 - 6321467
Alignment:
Q  471 aggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatgcaactgagacaa 557  Q
    |||||||||||||||| ||  | |||||||| |||||||| ||| |  | | ||||||| ||||||||||||||||| |||| ||||    
T  6321553 aggctatccaaaacaacaggctttacatacttgatcaccatgactcaatatatccatatctgaggaaaataaatgcagctgatacaa 6321467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 6363681 - 6363628
Alignment:
Q  9 gaatccacacatcatcaaaaaactctcggtaaattgaatagtttaactttgtta 62  Q
    ||||||||||||||| |||||||||| |||||| | ||| ||||||| ||||||    
T  6363681 gaatccacacatcataaaaaaactcttggtaaagttaatggtttaacattgtta 6363628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 545
Target Start/End: Complemental strand, 6288928 - 6288852
Alignment:
Q  469 acaggctatccaaaacaatagattgtacatactcgatcaccacgacccgctctttccatatttgaggaaaataaatg 545  Q
    |||||||||||| ||||| ||| | |||||||| ||| |||| ||| |  | |||||||||||||| ||||||||||    
T  6288928 acaggctatccataacaagagactttacatacttgattaccaagactcaatatttccatatttgagcaaaataaatg 6288852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 551
Target Start/End: Complemental strand, 6410299 - 6410267
Alignment:
Q  519 tctttccatatttgaggaaaataaatgcaactg 551  Q
    |||| ||||||||||||||||||||||||||||    
T  6410299 tcttaccatatttgaggaaaataaatgcaactg 6410267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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