View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326_high_1 (Length: 923)
Name: NF1326_high_1
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_high_1 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 848; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 1 - 879
Target Start/End: Complemental strand, 1718151 - 1717270
Alignment:
| Q |
1 |
ttgcagaaaagctatatagatgagtatatgactgcattacttgaacattgtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1718151 |
ttgcagaaaagctatatagatgagtatatgactgcattacttgaacattgtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaag |
1718052 |
T |
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| Q |
101 |
tttctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaagaaaccaatccaaccattctttgcaattccataagtcatgttatat |
200 |
Q |
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| T |
1718051 |
tttctaaagttatttgggaatctccaagttaaaaaaaccatttttaatcctaaagaaaccaatccaaccattctttgcaattccataagtcatgttatat |
1717952 |
T |
|
| Q |
201 |
acgtatcttccaactgcaattcaaagaatatcagcaaatgaatacgtgagcatgagaggctaaaatagaacctcattcaatcaaatcagtgataaaggtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1717951 |
acgtatcttccaactgcaattcaaagaatatcagcaaatgaatacgtgagcatgagaggctaaaatagaacctcattcaatcaaatcagtgataaaggtc |
1717852 |
T |
|
| Q |
301 |
ttggaaggtagaaaaataagaaatgaatactgtcactacaagcacgtcaacacagcagaacatttttcagaccagattcctctcattctcatatcctacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1717851 |
ttggaaggtagaaaaataagaaatgaatactgtcactacaagcacgtcaacacagcagaacatttttcagaccagattcctctcattctcatatcctacc |
1717752 |
T |
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| Q |
401 |
ataaaattaattagcaaagaatcaaatcaaaatttccatgacattcaatttcaagttgcatacaaagaatataatcttcttaaaat---acacatggttc |
497 |
Q |
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| T |
1717751 |
ataaaattaattagcaaagaatcaaatcaaaatttccatgacattcaatttcaagttgcatacaaagaatataatcttcttaaaataaaacacatggttc |
1717652 |
T |
|
| Q |
498 |
ttctttctctataacgcaagagagaatcaagaacaggttgcagcatctggttcttgacggcaagtgatcataattcaaagacaaatctaaatcttatctt |
597 |
Q |
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| T |
1717651 |
ttctttctctataacgcaagagagaatcaagaacaggttgcagcatctggttcttgacggcaagtgatcataattcaaagacaaatctaaatcttatctt |
1717552 |
T |
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| Q |
598 |
agatgcaatagaaagattctccttccctggctcattgttttcggtctgccaaacaaatgtgatttaagcacagttttggttcagcatagtttcacattca |
697 |
Q |
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| T |
1717551 |
agatgcaatagaaagattctccttccctggctaattgttttcggtctgccaaacaaatgtgatttaagcacagttttggttcagcatagtttcacattca |
1717452 |
T |
|
| Q |
698 |
ctatagcaggcaaacattcaggtgcctaaaaattggcatgaaaaacaccaggttgaatatcagttgtcagcacaaccgggataatcctattgctaagtac |
797 |
Q |
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| T |
1717451 |
ctatagcaggcaaacattcaggtgcctaaaaattggcatgaaaaacaccaggttgaatatcagttgtcagcacaatagggataatcctattgctaagtac |
1717352 |
T |
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| Q |
798 |
actaagacaaaacaagagctggttagcctggaattgcagtctattacatctgctaatcctggattagaggatggtgatgatg |
879 |
Q |
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| T |
1717351 |
actaagacaaaacaagagctggttagcctggaattgcagtctattacatctgctaatcctggattaaaggatggtgatgatg |
1717270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 21263206 - 21263257
Alignment:
| Q |
103 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
154 |
Q |
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|||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
21263206 |
tctagagttatttgggaatatccaagttgaaaaagccatttttaatcctaaa |
21263257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 11852 - 11903
Alignment:
| Q |
103 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
154 |
Q |
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|||| ||||||||| |||| ||||||||||||| ||||||||||||||||| |
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| T |
11852 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
11903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 42934919 - 42934868
Alignment:
| Q |
103 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
154 |
Q |
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| T |
42934919 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
42934868 |
T |
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