View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326_high_12 (Length: 457)
Name: NF1326_high_12
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 175 - 428
Target Start/End: Original strand, 22536560 - 22536815
Alignment:
| Q |
175 |
gcaggcatccatactcaaatccacagcagctgcaagagcaacaaaagcagcaacatctccggtgcttcacaccaacttccacctccgttttactacacnn |
274 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22536560 |
gcaggcatccatactcaaatccatagcagttgcaagagcaacaaaagcagcaacatctccggtgcttcacaccaacttccacctccgttttactacactt |
22536659 |
T |
|
| Q |
275 |
nnnnncaccgtcaaacacta--caaaaactgattctccaataaaaaatctgaaccggaaccagattcggttcttaaaccggatcctaattcccagcttcc |
372 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22536660 |
tttttcaccgtcaaacactatacaaaaactgattctccaatgaaaaatctgaaccggaaccagattcggttcttaaaccggatcctaattcccagcttcc |
22536759 |
T |
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| Q |
373 |
gtttggagtattcaccggagtaacacctgttgtaacatcaattgtaacgagagaag |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22536760 |
gtttggagtattcaccggagtaacacctgttgtaacatcaattgtaacgagagaag |
22536815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 293 - 419
Target Start/End: Complemental strand, 438687 - 438555
Alignment:
| Q |
293 |
tacaaaaactgattctccaataaaaaatctgaaccggaaccagattcggttcttaa------accggatcctaattcccagcttccgtttggagtattca |
386 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||| ||| |||| | |||||||||||| ||||||||||| ||||||||||||| |
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| T |
438687 |
tacaaaaattgattctccaatgaaaaatctgaaccggaaccagatccgggtcttgatcctgaaccggatcctaaatcccagcttccatttggagtattca |
438588 |
T |
|
| Q |
387 |
ccggagtaacacctgttgtaacatcaattgtaa |
419 |
Q |
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| T |
438587 |
ccggagtaacacctgaagtaacatcaattgtaa |
438555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 438834 - 438730
Alignment:
| Q |
179 |
gcatccatactcaaatccacagcagctgcaagagcaacaaaagcagcaacatc-tccg----------gtgcttcacaccaacttccacctccgttttac |
267 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
438834 |
gcatccatactcaaatccatagcagctgcaagagcaacaaaagctgcagcatcttccgtgcatgtcacgtgcttcacaccaacttccacctccggtttac |
438735 |
T |
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| Q |
268 |
tacac |
272 |
Q |
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||||| |
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| T |
438734 |
tacac |
438730 |
T |
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