View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326_high_16 (Length: 415)
Name: NF1326_high_16
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 80 - 407
Target Start/End: Complemental strand, 8280865 - 8280538
Alignment:
| Q |
80 |
aaaattaagttacttgtgcatttatgcttgcttgattaacgaaaactaattatgctcgttctgtattaccttggnnnnnnnngtattactgtcaagtttt |
179 |
Q |
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| T |
8280865 |
aaaattaagttacttgtgcatttatgcttgcttgatgaacgaaaactaattatgctcgttctgtattaccttggaaaaaaaagtattactgtcaagtttt |
8280766 |
T |
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| Q |
180 |
caaatctattcaagtataccatgtggcatatacatcgtattcatcaaaagaaaaagtaatttatgcaacaagctagagaaaagaagactgcactcaattc |
279 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8280765 |
caaacctattcaagtataccatgtggcatatacatcgtattcatcaaaagaaaaagtaatttatgcaacaagctagagaaaagaagactgcactcaattc |
8280666 |
T |
|
| Q |
280 |
cataaattataccaccggaatggcattattatacagactgtatgtataaaatattggtgaagcatcaaacaaaatactttatccattttaaaatataagc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8280665 |
cataaattataccaccggaatggcattattatacagactgtatgtataaaatattggtgaagcatcaaacaaaatactttatccattttaaaatataagc |
8280566 |
T |
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| Q |
380 |
gaaaatccgaatacttcacatattattc |
407 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8280565 |
gaaaatccgaatacttcacatattattc |
8280538 |
T |
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