View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1326_high_18 (Length: 413)
Name: NF1326_high_18
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_high_18 |
 | |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 126 - 403
Target Start/End: Complemental strand, 31197585 - 31197308
Alignment:
| Q |
126 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197585 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
31197486 |
T |
|
| Q |
226 |
ttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactatt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31197485 |
ttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaatacaactactatt |
31197386 |
T |
|
| Q |
326 |
ttcgggatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatttgaatatagtctctcctatg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197385 |
ttcgggatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatttgaatatagtctctcctatg |
31197308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 126 - 403
Target Start/End: Complemental strand, 31176981 - 31176704
Alignment:
| Q |
126 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31176981 |
tgatttgagattaatccaagaaacatgatgtgggtttaagggttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
31176882 |
T |
|
| Q |
226 |
ttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactatt |
325 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31176881 |
ttgtcaactccaccacaaccatattgtaataggttgcaatgatgccacccatatccggcaccgtaaaccacttatcttcaagtacaataccactactatt |
31176782 |
T |
|
| Q |
326 |
ttcgggatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatttgaatatagtctctcctatg |
403 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31176781 |
ttcgagatgatgcaatccattcaagatatagttaaaacgatcatcactaaaatatatctgaatatagtctctcctatg |
31176704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 31197685 - 31197615
Alignment:
| Q |
30 |
accatgacgacgcctcttcactcttgtagcttccgctccatagatgatggaggtagtggacatcattcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31197685 |
accatgacgacgcctcttcactcttgtagcttccgctccgtagatgatggaggtagtggacatcattcttt |
31197615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 31177078 - 31177008
Alignment:
| Q |
30 |
accatgacgacgcctcttcactcttgtagcttccgctccatagatgatggaggtagtggacatcattcttt |
100 |
Q |
| |
|
||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31177078 |
accatgatgatgcctcttcactcttgtagtttccgctccgtagatgatggaggtagtggacatcattcttt |
31177008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 126 - 373
Target Start/End: Complemental strand, 38012 - 37765
Alignment:
| Q |
126 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaat-gtctctgaaattccaatttcaaga |
224 |
Q |
| |
|
||||||| |||||| |||| ||||||||| ||||| | ||||| ||||||||| ||| ||||||||||||| ||| || |||| ||||||||| || |
|
|
| T |
38012 |
tgatttgggattaagtcaaggcacatgatgtaggtttttgggttaatcggtggcctacctttaattgagaaaaaaagtccctaaaat-ccaatttcatga |
37914 |
T |
|
| Q |
225 |
tttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactat |
324 |
Q |
| |
|
||| |||| |||||||||||| ||||||||| ||| ||| |||| |||||||| |||| ||| ||||| |||||| |||| ||||||||||||||| |
|
|
| T |
37913 |
tttgtcaattccaccacaaccctattgtaatgagttgcaacgatgtggcccatatccggcaatgtcaaccacttatctagaagtgcaataccactactat |
37814 |
T |
|
| Q |
325 |
tttcgggatgatgcaatccattcaagatatagttaaaacgatcatcact |
373 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
37813 |
tttcgtgagtatgcaatccattcaaaatatagttataacgatcatcact |
37765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 20905380 - 20905502
Alignment:
| Q |
134 |
gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaac |
233 |
Q |
| |
|
|||||| ||||| |||||||||| |||| | ||||||||||||||| |||||||||| |||||||||||| ||||||||||| | ||||| ||||| |
|
|
| T |
20905380 |
gattaagccaaggcacatgatgtgagtttttgggttaagcggtggcctacctctaattgggaaaaatgtctccgaaattccaatattgggatttgtcaac |
20905479 |
T |
|
| Q |
234 |
tccaccacaaccatattgtaata |
256 |
Q |
| |
|
||||||| |||| |||||||||| |
|
|
| T |
20905480 |
tccaccataaccctattgtaata |
20905502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 373
Target Start/End: Original strand, 6963082 - 6963248
Alignment:
| Q |
207 |
gaaattccaatttcaagatttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaa |
306 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||| |||||||||| ||| ||| |||| || ||| || | | | ||||| ||||| |||| |
|
|
| T |
6963082 |
gaaattccaatttcatgatttgtcaactccactacaacactattgtaataagttgcaacgatgtgacacatgtccaggagcatcaaccacttatcatcaa |
6963181 |
T |
|
| Q |
307 |
gtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacgatcatcact |
373 |
Q |
| |
|
| ||||||| |||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
6963182 |
atgcaataccgctactattttgaggaggatgcaaatcattcaagatatagttaaaataatcatcact |
6963248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 367
Target Start/End: Complemental strand, 25140177 - 25139943
Alignment:
| Q |
134 |
gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaa-aaatgtctctgaaattccaatttcaagatttctcaa |
232 |
Q |
| |
|
|||||| |||||| |||||||||| |||| | || | |||||||||| ||||||||| ||| ||| ||||| |||||| |||| || || || |||| |
|
|
| T |
25140177 |
gattaagccaagacacatgatgtgagtttttgggtaatgcggtggcctatctctaattgggaataaaagtctccgaaatttcaatgtcgtgaattatcaa |
25140078 |
T |
|
| Q |
233 |
ctccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcggga |
332 |
Q |
| |
|
|||||| |||||| |||||||||| ||| ||| |||| | ||| || || | || ||||| ||||| |||| | ||| |||| ||||||||| |||| |
|
|
| T |
25140077 |
ctccactacaaccttattgtaataagttgcaacgatgtgaatcatgtccgggagcgtcaaccacttatcatcaaatgcaacaccattactattttgggga |
25139978 |
T |
|
| Q |
333 |
tgatgcaatccattcaagatatagttaaaacgatc |
367 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
25139977 |
ggatgcaaggcattcaagatatagttaaaacgatc |
25139943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 365
Target Start/End: Complemental strand, 40091027 - 40090838
Alignment:
| Q |
175 |
gtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaactccaccacaaccatattgtaataggttacaatgatgccacc |
274 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||| | |||||| ||||| ||||||| || |||||| |||||||| | ||| ||| |||| ||| |
|
|
| T |
40091027 |
gtggtctgcctctaattgggaaaaa-gtctctgaaatactgatttcatgatttgtcaactcaactacaaccctattgtaacaagttgcaacgatgtgacc |
40090929 |
T |
|
| Q |
275 |
catatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacga |
365 |
Q |
| |
|
||| | || | || ||||| |||||||| | | |||| ||||||||||||| |||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
40090928 |
catgttcggtaacgtcaaccacttatcttctaatgcaattccactactattttggggagggtgcaaacaattcaagatatagttaaaacga |
40090838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 359
Target Start/End: Complemental strand, 8119769 - 8119576
Alignment:
| Q |
167 |
gttaagcggtggcctgcctctaattgag-aaaaatgtctctgaaattccaatttcaagatttctcaactccaccacaaccatattgtaataggttacaat |
265 |
Q |
| |
|
||||| ||| ||||| |||||||||| | ||||| |||||||||||||||||||||| | | | |||||||||| | |||||||||| ||| ||| |
|
|
| T |
8119769 |
gttaatcggaggcctacctctaattggggaaaaaaatctctgaaattccaatttcaaggctagttatctccaccacatgcctattgtaataagttgcaac |
8119670 |
T |
|
| Q |
266 |
gatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggatgatgcaatccattcaagatatagtta |
359 |
Q |
| |
|
|||| || |||||| | || ||| |||||||||||| | |||| | |||||||| ||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
8119669 |
gatgtgactcatatccgacaatgtcaaccatttatctggaggtactaaaccactaccatttttgggaggatgcaatccatttaagatatagtta |
8119576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 364
Target Start/End: Original strand, 25854218 - 25854448
Alignment:
| Q |
134 |
gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaac |
233 |
Q |
| |
|
|||||| |||||| ||||||||||| ||| | ||||| || | || |||||||||| | |||| |||||||||||||||||||||||| | | | | |
|
|
| T |
25854218 |
gattaacccaagacacatgatgtggcttttcgggttaatcgaagatctacctctaattgggtaaaaagtctctgaaattccaatttcaagactagttatc |
25854317 |
T |
|
| Q |
234 |
tccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggat |
333 |
Q |
| |
|
||||| ||| | |||| || || ||| ||| |||| || |||||| | || ||| |||||||||||| | || |||||||||| |||||||||| |
|
|
| T |
25854318 |
tccactacaggcctattctagtaagtttcaacgatgtgactcatatccgacaatgtcaaccatttatctggaggtgcaataccactgtcattttcgggag |
25854417 |
T |
|
| Q |
334 |
gatgcaatccattcaagatatagttaaaacg |
364 |
Q |
| |
|
||| ||||| ||| |||||||||||| |||| |
|
|
| T |
25854418 |
gatacaatcaatttaagatatagttataacg |
25854448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 269
Target Start/End: Original strand, 25195753 - 25195888
Alignment:
| Q |
134 |
gattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagatttctcaac |
233 |
Q |
| |
|
||||| ||||||| ||||||||||| ||| | ||||| ||| |||| |||||| ||| |||||| ||||||| ||||||||||||||| | | | | |
|
|
| T |
25195753 |
gattactccaagacacatgatgtggattttcgggttaatcggatgcctacctctatttgggaaaaaagtctctgtaattccaatttcaaggctagttatc |
25195852 |
T |
|
| Q |
234 |
tccaccacaaccatattgtaataggttacaatgatg |
269 |
Q |
| |
|
||||||||| | |||||||||| ||| |||||||| |
|
|
| T |
25195853 |
tccaccacaggcctattgtaataagttgcaatgatg |
25195888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 30938046 - 30937987
Alignment:
| Q |
210 |
attccaatttcaagatttctcaactccaccacaaccatattgtaataggttacaatgatg |
269 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
30938046 |
attccaatttcgtgatttgtcaactccactacaaccatattacaataagttacaatgatg |
30937987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 28421303 - 28421376
Alignment:
| Q |
126 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaa |
199 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||| ||| | ||||| ||| ||||| |||||||||| |||||| |
|
|
| T |
28421303 |
tgatttgggattaaaccaagacacatgatgtggattttcgggttaaccggaggcctacctctaattgggaaaaa |
28421376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 25614415 - 25614483
Alignment:
| Q |
304 |
caagtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacgatcatcac |
372 |
Q |
| |
|
||||| ||||||||| ||||||| |||| ||||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
25614415 |
caagtgcaataccaccactatttgtgggaggatgcaagtcatttaagatatagttataacgatcctcac |
25614483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 295
Target Start/End: Complemental strand, 17341415 - 17341246
Alignment:
| Q |
126 |
tgatttgagattaatccaagaaacatgatgtgggtttaagagttaagcggtggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaagat |
225 |
Q |
| |
|
||||||| |||||| |||||| |||||||| || || | ||||| ||| || ||||||||||||| | |||| || || ||||||||||||||||| |
|
|
| T |
17341415 |
tgatttgggattaacccaagacacatgatgcggtatttcgggttaatcggaggtctgcctctaattgggtaaaaagtatccgaaattccaatttcaaggc |
17341316 |
T |
|
| Q |
226 |
ttctcaactccaccacaaccatattgtaataggttacaatgatgccacccatatctggcactgtaaacca |
295 |
Q |
| |
|
| | | ||||||||||| | |||||||||| ||| ||| |||| ||||||||| |||| ||| ||||| |
|
|
| T |
17341315 |
tagttatctccaccacaagcctattgtaataagttgcaacgatgtgacccatatccggcaatgtcaacca |
17341246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 14985627 - 14985673
Alignment:
| Q |
177 |
ggcctgcctctaattgagaaaaatgtctctgaaattccaatttcaag |
223 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
14985627 |
ggcctacctctaattgggaaaaaagtctctgaaattccaatttcaag |
14985673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 364
Target Start/End: Complemental strand, 19637537 - 19637445
Alignment:
| Q |
272 |
acccatatctggcactgtaaaccatttatcttcaagtacaataccactactattttcgggatgatgcaatccattcaagatatagttaaaacg |
364 |
Q |
| |
|
||||||||| |||| ||| ||| | |||||| |||| ||| |||||||| ||||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
19637537 |
acccatatccggcaatgtcaactaattatctggaagttcaaaaccactaccattttttggaagatgcaatccattcaagatatagttataacg |
19637445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 19637627 - 19637586
Alignment:
| Q |
181 |
tgcctctaattgagaaaaatgtctctgaaattccaatttcaag |
223 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
19637627 |
tgcctctaattgggaaaaa-gtctctgaaattccaatttcaag |
19637586 |
T |
|
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