View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326_high_2 (Length: 719)

Name: NF1326_high_2
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326_high_2
NF1326_high_2
[»] chr1 (4 HSPs)
chr1 (30-564)||(24606632-24607181)
chr1 (160-211)||(6128011-6128062)
chr1 (160-213)||(9570644-9570696)
chr1 (605-642)||(24607247-24607284)
[»] chr3 (2 HSPs)
chr3 (160-197)||(14270564-14270601)
chr3 (160-250)||(8027715-8027805)
[»] chr5 (1 HSPs)
chr5 (159-201)||(31669059-31669101)
[»] scaffold0016 (1 HSPs)
scaffold0016 (158-211)||(77618-77671)
[»] chr8 (1 HSPs)
chr8 (167-196)||(31632430-31632459)
[»] chr4 (1 HSPs)
chr4 (160-201)||(6606058-6606099)


Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 30 - 564
Target Start/End: Original strand, 24606632 - 24607181
Alignment:
Q  30 caaataccatacaacttagaaggaagttttccatactataaaaatatacagtaatat--gtaaggatttgacagcaatttctcaccaattcagataagaa 127  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24606632 caaataccatgcaacttagaaggaagttttctatactataaaaatatacagtaatatatgtaaggatttgacagcaatttctcaccaattcagataagaa 24606731  T
Q  128 acgcataattcgcatcatttatggatcggaataacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctcttttaaacgtattcga 227  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||| |||    
T  24606732 acggataattcgtatcatttatggatcggaataacccaattgggttggtttgatggtgttagtttgagaccttgaagcatgcccttttaaacgtatccga 24606831  T
Q  228 ttcttccagatgccattttcggtgggttaggttgactttttcaagaaaaaagagttatcccatgcatggtgcttgtgcgtgcatgcttgatcttttccat 327  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    |||||||||||| |||||||||    
T  24606832 ttcttcctgatgccattttcggtgggttaggttgactttttcaag--aaaagagttatcccatgcatggtgctt----gtgcatgcttgaccttttccat 24606925  T
Q  328 ataaaatgcaaggctcattgtcatagcttga--------------aacat--caacaattgtggtagaaaaaggaaacaatgccattatttccatagact 411  Q
    | |||||||||||||||||||||||||| ||              |||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  24606926 aaaaaatgcaaggctcattgtcatagctagaggcataccttttagaacataacaacaattgtggtagaaaaatgaaacaatgccattatttccatagact 24607025  T
Q  412 caatacgagaaaca---cctaaataactcaaacgaggaacctcatctggttcacgtgctagattaagtatttaatgtaggatattgtcaaactcaaccaa 508  Q
    ||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| || |||||||||    
T  24607026 caatacgagaaacaccccctaaataactcaaacgaggaacctcatatggttcacgtgctagattaagtatttgatgttggatattgttaagctcaaccaa 24607125  T
Q  509 acccacaataaaaccatgcttttcaatggaattagcttgcatttgtaaggactgat 564  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24607126 agtcacaataaaaccatgcttttcaatggaattagcttgcatttgtaaggactgat 24607181  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 6128062 - 6128011
Alignment:
Q  160 aacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 211  Q
    ||||||| || ||||||||| ||||||||||||| ||||||| |||||||||    
T  6128062 aacccaaatgtgttggtctggtggtgttggtttgggaccttggagcgtgctc 6128011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 9570644 - 9570696
Alignment:
Q  160 aacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctctt 213  Q
    |||||| ||||||||| ||||||||||||| ||||||||||| || ||||||||    
T  9570644 aacccacttgggttgg-ctgatggtgttggcttgagaccttggagtgtgctctt 9570696  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 642
Target Start/End: Original strand, 24607247 - 24607284
Alignment:
Q  605 attctttataccaattagctactccaaatttctcaata 642  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  24607247 attctttataccaattagctattccaactttctcaata 24607284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 14270601 - 14270564
Alignment:
Q  160 aacccaattgggttggtctgatggtgttggtttgagac 197  Q
    |||||||||||||||| |||||||||||||||||||||    
T  14270601 aacccaattgggttggcctgatggtgttggtttgagac 14270564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 8027805 - 8027715
Alignment:
Q  160 aacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctcttttaaacgtattcgattcttccagatgccattttcggt 250  Q
    |||||| |||||||||| |||||||||||||||  |||||||||  |||||| |||   | ||||||||||||| | ||| || |||||||    
T  8027805 aacccacttgggttggtttgatggtgttggtttaggaccttgaaatgtgctccttttctcatattcgattcttctaaatgtcaatttcggt 8027715  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 31669101 - 31669059
Alignment:
Q  159 taacccaattgggttggtctgatggtgttggtttgagaccttg 201  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  31669101 taacccacttgggttggtctgatggtgttggcttgggaccttg 31669059  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 77618 - 77671
Alignment:
Q  158 ataacccaattgggttggtctgatggtgttggtttgagaccttgaagcgtgctc 211  Q
    |||||||| |||| |||||||||||||||||||||| ||| ||| || ||||||    
T  77618 ataacccacttggattggtctgatggtgttggtttgggactttggagtgtgctc 77671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 31632459 - 31632430
Alignment:
Q  167 ttgggttggtctgatggtgttggtttgaga 196  Q
    ||||||||||||||||||||||||||||||    
T  31632459 ttgggttggtctgatggtgttggtttgaga 31632430  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 6606058 - 6606099
Alignment:
Q  160 aacccaattgggttggtctgatggtgttggtttgagaccttg 201  Q
    |||||| ||||||||||||||||||||||| ||| |||||||    
T  6606058 aacccacttgggttggtctgatggtgttggcttgggaccttg 6606099  T

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