View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326_high_6 (Length: 519)

Name: NF1326_high_6
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326_high_6
NF1326_high_6
[»] chr8 (3 HSPs)
chr8 (30-510)||(11256165-11256638)
chr8 (35-213)||(30541820-30541999)
chr8 (148-213)||(32475594-32475659)
[»] scaffold0519 (1 HSPs)
scaffold0519 (30-510)||(8759-9231)
[»] chr7 (3 HSPs)
chr7 (52-255)||(34257534-34257732)
chr7 (54-221)||(6561121-6561286)
chr7 (30-135)||(23690567-23690672)
[»] chr2 (5 HSPs)
chr2 (35-221)||(9145536-9145722)
chr2 (30-221)||(26159650-26159840)
chr2 (54-184)||(9493668-9493798)
chr2 (150-219)||(34514350-34514419)
chr2 (54-138)||(27001207-27001291)
[»] chr6 (3 HSPs)
chr6 (53-218)||(12250853-12251018)
chr6 (30-213)||(1055582-1055765)
chr6 (54-138)||(34703248-34703332)
[»] chr4 (6 HSPs)
chr4 (55-221)||(26698029-26698195)
chr4 (55-185)||(55416847-55416977)
chr4 (106-221)||(48825341-48825455)
chr4 (76-185)||(31160936-31161047)
chr4 (116-206)||(4492872-4492962)
chr4 (52-147)||(32311518-32311613)
[»] chr1 (3 HSPs)
chr1 (53-219)||(44962072-44962238)
chr1 (53-218)||(33677614-33677779)
chr1 (106-174)||(52243415-52243483)
[»] chr5 (5 HSPs)
chr5 (55-185)||(513432-513562)
chr5 (98-174)||(14653727-14653803)
chr5 (119-213)||(25714547-25714641)
chr5 (30-95)||(36274977-36275042)
chr5 (157-221)||(27626144-27626208)
[»] chr3 (4 HSPs)
chr3 (105-184)||(52162790-52162869)
chr3 (52-168)||(21393936-21394052)
chr3 (120-190)||(39978319-39978389)
chr3 (114-190)||(3452257-3452333)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 30 - 510
Target Start/End: Original strand, 11256165 - 11256638
Alignment:
Q  30 tttatttgatctgactctcttttgtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataa 129  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  11256165 tttatttgatctgactctcttttgtttggattgtttggcatgaccagaatgctagagtctttcaacataaaggagattctattaatcagtttatagataa 11256264  T
Q  130 aattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatgttatgtctgg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||||      ||||    
T  11256265 aattaagctcaagtctttttggtggttgaagacaaatcatcctaactttacttttacttatcagatgcagtggcttaatcccctattatga-----ctgg 11256359  T
Q  230 aagttcctacttagcttt--atttagttnnnnnnnnnttattatgtttttagcgtgcctgctttgtggctcaaacgctaagtcttttcttagttttgatg 327  Q
    ||||||||||||||||||  ||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11256360 aagttcctacttagctttttatttagttaaaaaaaa-ttattacgtttttagcgtgcctgctttgtggctcaaacgctaagtcttttcttaattttgatg 11256458  T
Q  328 taacttatactttatccttactttttctcaggcacttcttgagcttgagagactaagctgttattattatattcaattttaacttcttaaaacaataatt 427  Q
    ||| ||||| |||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  11256459 taatttatattttatccttactttttctctaacacttcttgagtttgagagactaagctgttattattatatttcattttaacttcttaaaacaataatt 11256558  T
Q  428 ttatgtctaggttaaatatttttattttaactaataatatcatatgacactaatgatagatgcttgagttttgtgagaataat 510  Q
    |||||||||||||||||||||||||||||   | |||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  11256559 ttatgtctaggttaaatatttttatttta---attaatataatatgacactaatgatagatacttgagttttgtgagtataat 11256638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 30541820 - 30541999
Alignment:
Q  35 ttgatctgactctcttttgtttggattgtttggcgtgaccagaatgctagagtctttc-aacgtaaaggagattctattaatcaacttatagataaaatt 133  Q
    ||||| || ||||||| ||||| ||||||||||| |||| |||| |||||||| |||  |||  || ||||| |||||| ||||||||||||  ||||||    
T  30541820 ttgatttggctctcttgtgtttagattgtttggcatgacaagaaggctagagtttttataacaaaagggagactctattcatcaacttatagggaaaatt 30541919  T
Q  134 aagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccct 213  Q
    |||||| | || || | ||||||||| |||||||||||||| |||||||||| |||| | ||| |||||||||| |||||    
T  30541920 aagctccaatccttcttgtggttgaaaacaaatcatcctaattttgcttttaattatcatatgcggtggcttaaccccct 30541999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 32475659 - 32475594
Alignment:
Q  148 ttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccct 213  Q
    ||||||||||||||||||||||||||| || ||||| | |||| | ||||||||||| ||||||||    
T  32475659 ttggtggttgaagacaaatcatcctaatttcgctttcaattatcatatgtggtggctcaatcccct 32475594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 30 - 510
Target Start/End: Complemental strand, 9231 - 8759
Alignment:
Q  30 tttatttgatctgactctcttttgtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataa 129  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  9231 tttatttgatctgactctcttttgtttggattgtttggcatgaccagaatgctagagtctttcaacataaaggagattctattaatcagtttatagataa 9132  T
Q  130 aattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatgttatgtctgg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||||      ||||    
T  9131 aattaagctcaagtctttttggtggttgaagacaaatcatcctaactttacttttacttatcagatgcagtggcttaatcccctattatga-----ctgg 9037  T
Q  230 aagttcctacttagcttt--atttagttnnnnnnnnnttattatgtttttagcgtgcctgctttgtggctcaaacgctaagtcttttcttagttttgatg 327  Q
    ||||||||||||||||||  ||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9036 aagttcctacttagctttttatttagttaaaaaaaa-ttattacgtttttagcgtgcctgctttgtggctcaaacgctaagtcttttcttaattttgatg 8938  T
Q  328 taacttatactttatccttactttttctcaggcacttcttgagcttgagagactaagctgttattattatattcaattttaacttcttaaaacaataatt 427  Q
    ||| ||||| |||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  8937 taatttatattttatccttactttttctctaacacttcttgagtttgagagactaagctgttattattatatttcattttaacttcttaaaacaataatt 8838  T
Q  428 ttatgtctaggttaaatatttttattttaactaataatatcatatgacactaatgatagatgcttgagttttgtgagaataat 510  Q
    |||||||||||||||||| ||||||||||   | |||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  8837 ttatgtctaggttaaata-ttttatttta---attaatataatatgacactaatgatagatacttgagttttgtgagtataat 8759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 52 - 255
Target Start/End: Original strand, 34257534 - 34257732
Alignment:
Q  52 tgtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtctttttgg 151  Q
    |||||||||||||||||||||  ||||||  | ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||  |||| || |||    
T  34257534 tgtttggattgtttggcgtgataagaatgtcatagtctttcaacataaaagagattctattaatcaacttatagacaaaattaagcttcagtcgttctgg 34257633  T
Q  152 tggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatgttatgtctggaagttcctacttagctttattt 251  Q
    |||| |||| ||||||||||||||||| |||||| |||| | |||||||||||| || ||| ||||||||     |||||||||| | ||||||||||||    
T  34257634 tggtcgaaggcaaatcatcctaactttacttttaattatcacatgtggtggcttgattccccattatgtt-----tggaagttccaatttagctttattt 34257728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 6561286 - 6561121
Alignment:
Q  54 tttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtctttttggtg 153  Q
    |||||||| ||||||||||| | ||||||||  | |||||||  || ||  |||| || | ||||||||| || ||| |||||||| | || || |||||    
T  6561286 tttggattatttggcgtgacaacaatgctag--tttttcaacaaaatgggaattcaatcattcaacttattgaaaaagttaagctccaatccttctggtg 6561189  T
Q  154 gttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatgtt 221  Q
    ||||||| ||||||||  ||| ||| |||||| |||| | ||||||||||||||||| || |||||||    
T  6561188 gttgaaggcaaatcattttaatttttcttttaattatcatatgtggtggcttaatcctcttttatgtt 6561121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 23690672 - 23690567
Alignment:
Q  30 tttatttgatctgactctcttttgtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataa 129  Q
    ||||||| ||||| |||| || ||||| |||| ||||||||||   |||| ||||||| |||||||  || ||| ||||||| ||||| ||||| |||||    
T  23690672 tttatttaatctggctcttttgtgtttagattatttggcgtgataggaatactagagtttttcaacaaaatggaaattctatcaatcatcttatcgataa 23690573  T
Q  130 aattaa 135  Q
    ||||||    
T  23690572 aattaa 23690567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 9145536 - 9145722
Alignment:
Q  35 ttgatctgactctcttttgtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaatta 134  Q
    ||||| || ||||||| |||||| ||||||||||||||| ||||| | |||||||| ||||  |  ||  ||||||||||||| ||| ||||||||||||    
T  9145536 ttgatatggctctcttgtgtttgaattgtttggcgtgacaagaattccagagtcttccaacaaacggggaattctattaatcagcttctagataaaatta 9145635  T
Q  135 agctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatgtt 221  Q
    ||||| | |||||||||||||||||| ||||||| ||||| |||||||||| |||  | |  |||||||||||||| || |||||||    
T  9145636 agctccaatctttttggtggttgaaggcaaatcaccctaattttgcttttaattagcacaaatggtggcttaatcctcttttatgtt 9145722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 26159840 - 26159650
Alignment:
Q  30 tttatttgatctgactctcttttgtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataa 129  Q
    ||||||| || || || |||| |||||||||| | |||||||||  |||||||||||| |||||||  || |   |||| || | |||||||||||||||    
T  26159840 tttatttaatttggctttcttgtgtttggattatctggcgtgacaggaatgctagagt-tttcaacaaaaggtcaattcaataattcaacttatagataa 26159742  T
Q  130 aattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatgtt 221  Q
    |||||||||  | || || | |||| ||||||||||||||||||| |||||||||| |||| | ||||||||||||||||| || |||||||    
T  26159741 aattaagcttcaatccttctagtggctgaagacaaatcatcctaattttgcttttagttatcacatgtggtggcttaatcctcttttatgtt 26159650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 9493668 - 9493798
Alignment:
Q  54 tttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtctttttggtg 153  Q
    |||||||| |||||||||||  |||  |||||||||| ||||  || ||| || |||||||| ||||| || | ||||| |||||  | || || || ||    
T  9493668 tttggattatttggcgtgacgggaactctagagtcttccaacaaaagggaaatactattaatgaacttttaaacaaaataaagctacaatccttctgatg 9493767  T
Q  154 gttgaagacaaatcatcctaactttgctttt 184  Q
    |||||| |||||| ||||||| |||||||||    
T  9493768 gttgaaaacaaattatcctaattttgctttt 9493798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 34514419 - 34514350
Alignment:
Q  150 ggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatg 219  Q
    |||||||||||||||||||    || ||||||||||  ||| | |||||||||||||||||||| |||||    
T  34514419 ggtggttgaagacaaatcacgtcaattttgcttttaactatcatatgtggtggcttaatccccttttatg 34514350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 27001207 - 27001291
Alignment:
Q  54 tttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagct 138  Q
    |||||||| |||||| |||| ||||||| ||| | ||||||   |||||| |||| || |  |||||||||||||||||||||||    
T  27001207 tttggattatttggcatgactagaatgcaagattttttcaataaaaaggaaattcaatcatccaacttatagataaaattaagct 27001291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 12250853 - 12251018
Alignment:
Q  53 gtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaa-aggagattctattaatcaacttatagataaaattaagctcaagtctttttgg 151  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||  || |||| |||| || | ||||||| |||||||| |||||||| | || || | |    
T  12250853 gtttggattatttggcgtgacaagaatgctagagtttttcaacaaaagagga-attcaatcattcaacttttagataaagttaagctccaatccttctag 12250951  T
Q  152 tggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattat 218  Q
    ||||||||  ||||||||| ||| |||||||||| |||| | |||||||||||||||||||| ||||    
T  12250952 tggttgaaagcaaatcatcataattttgcttttaattatcacatgtggtggcttaatccccttttat 12251018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 1055582 - 1055765
Alignment:
Q  30 tttatttgatctgactctcttttgtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataa 129  Q
    |||| ||||| || ||||||| ||||||||||||||||||||||   ||||||||| | ||| ||| | |||  || | |||| |||| ||| |||| ||    
T  1055582 tttacttgatttggctctcttgtgtttggattgtttggcgtgacagaaatgctagaatttttaaacatcaagaggactttattcatcaccttttagacaa 1055681  T
Q  130 aattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccct 213  Q
    ||||||| |  | |||| ||||||| ||||| ||| ||||||||| |||||||||| |||| | ||||||||||||||||||||    
T  1055682 aattaagttgcaatcttattggtggatgaaggcaactcatcctaattttgcttttaattattacatgtggtggcttaatcccct 1055765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 34703248 - 34703332
Alignment:
Q  54 tttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagct 138  Q
    |||||||| |||||| ||||  |||||| ||||| ||||||   |||||| |||| || |  |||||||||||||||||||||||    
T  34703248 tttggattatttggcatgactggaatgcaagagtttttcaataaaaaggaaattcaatcatccaacttatagataaaattaagct 34703332  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 26698029 - 26698195
Alignment:
Q  55 ttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtctttttggtgg 154  Q
    ||||||| || || |||||  |||||||||||| |||||||  || | | |||| || |  ||||| |||||||||||||||||  | || || ||||||    
T  26698029 ttggattattaggtgtgacaggaatgctagagtttttcaacaaaaggaaaattcaatcatccaactcatagataaaattaagcttcaatccttctggtgg 26698128  T
Q  155 ttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatgtt 221  Q
    |||||| ||||||||||||| |||||||||| |||| | ||||||||||||||||| || |||||||    
T  26698129 ttgaagccaaatcatcctaattttgcttttaattatcacatgtggtggcttaatcctcttttatgtt 26698195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 55416847 - 55416977
Alignment:
Q  55 ttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagct-caagtctttttggtg 153  Q
    |||||||||||||| ||||  |||| ||| |||||| ||||  |||| | ||| |||| |||| |||||||||||||||||||| ||| || || |||||    
T  55416847 ttggattgtttggcatgacatgaattctatagtcttccaacaaaaagaaaattttattcatcagcttatagataaaattaagctacaattc-ttctggtg 55416945  T
Q  154 gttgaagacaaatcatcctaactttgctttta 185  Q
    ||||||| ||||||||||||| ||||||||||    
T  55416946 gttgaaggcaaatcatcctaattttgctttta 55416977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 48825455 - 48825341
Alignment:
Q  106 ttctattaatcaacttatagataaaattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggctt 205  Q
    |||||||||||| |||  ||| ||||||||| |  | |||||||||||||||||| ||||||||||||| |||| ||||| |||  | |||| |||||||    
T  48825455 ttctattaatcagcttg-agacaaaattaaggtacaatctttttggtggttgaaggcaaatcatcctaattttgtttttaattaccacatgtcgtggctt 48825357  T
Q  206 aatcccctattatgtt 221  Q
    |||||||| |||||||    
T  48825356 aatccccttttatgtt 48825341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 31161047 - 31160936
Alignment:
Q  76 gaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtctttttggtggttgaag--acaaatcatccta 173  Q
    |||||||||||| |||||||  || ||  ||||||| ||||||||||||||||||||||||||| |  | || ||||||||||||    |||||||||||    
T  31161047 gaatgctagagtttttcaacaaaaggggaattctatcaatcaacttatagataaaattaagctccaacccttatggtggttgaaggtgtaaatcatccta 31160948  T
Q  174 actttgctttta 185  Q
    | ||||||||||    
T  31160947 attttgctttta 31160936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 4492962 - 4492872
Alignment:
Q  116 caacttatagataaaattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggctta 206  Q
    ||||||||||||||||||||| || | ||||| |||| |||||||| |||||||||||| |||  ||||| |||| | |||||| ||||||    
T  4492962 caacttatagataaaattaagatccaatctttctggtagttgaagataaatcatcctaattttatttttaattatcacatgtggcggctta 4492872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 32311518 - 32311613
Alignment:
Q  52 tgtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtcttt 147  Q
    |||||||| |||||| ||||||  |||||||||||||||| ||| ||| | | ||||| ||||| |  ||||||| |||||||||||  |||||||    
T  32311518 tgtttggactgtttgacgtgacatgaatgctagagtcttttaacataaggaaaattcttttaataagtttatagacaaaattaagctttagtcttt 32311613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 44962072 - 44962238
Alignment:
Q  53 gtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtctttttggt 152  Q
    ||||||||| ||||||||||| | |||||| |||| |||||||  || ||| |||| || |  |||||||||||||||||||||||| | |  ||||| |    
T  44962072 gtttggattatttggcgtgacaacaatgcttgagtttttcaacaaaagggaaattcaatcatccaacttatagataaaattaagctccaattcttttgat 44962171  T
Q  153 ggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatg 219  Q
     || ||||| |||||||| ||| |||||||||| |||| | ||| ||||||||||| |||| |||||    
T  44962172 agtcgaagataaatcatcataattttgcttttaattatcacatgcggtggcttaattcccttttatg 44962238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 33677614 - 33677779
Alignment:
Q  53 gtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtctttttggt 152  Q
    ||||||||| ||||||||||    ||||||||||| |||||||  || ||  |||| || | ||| ||||| ||||||||||||||| | || || |  |    
T  33677614 gtttggattatttggcgtgatagaaatgctagagtttttcaacaaaaggggaattcaatcattcagcttatggataaaattaagctccaatccttctaat 33677713  T
Q  153 ggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattat 218  Q
    |||||||||||||||||| ||| |||||||||| |||| | ||||| |||||||||| ||| ||||    
T  33677714 ggttgaagacaaatcatcttaattttgcttttaattatcacatgtgttggcttaatctccttttat 33677779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 52243415 - 52243483
Alignment:
Q  106 ttctattaatcaacttatagataaaattaagctcaagtctttttggtggttgaagacaaatcatcctaa 174  Q
    |||||||||||| ||| | || |||||||||||| | || || |||||| ||||| |||||||||||||    
T  52243415 ttctattaatcagcttgtggacaaaattaagctccaatccttctggtggctgaaggcaaatcatcctaa 52243483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 513562 - 513432
Alignment:
Q  55 ttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtctttttggtgg 154  Q
    |||||||||||||||||||| |||  |||||||||| ||||  |||||| |||||||| |||||  ||||||||||||||||||    || ||  |||||    
T  513562 ttggattgtttggcgtgaccggaactctagagtcttccaacaaaaaggaaattctattcatcaatatatagataaaattaagctacgatccttccggtgg 513463  T
Q  155 ttgaagacaaatcatcctaactttgctttta 185  Q
    ||||||||||| ||| | || ||||||||||    
T  513462 ttgaagacaaaccattcaaattttgctttta 513432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 14653727 - 14653803
Alignment:
Q  98 aaaggagattctattaatcaacttatagataaaattaagctcaagtctttttggtggttgaagacaaatcatcctaa 174  Q
    ||||| || |||||||||||  ||||||||||||||||| || | ||||||||  ||||||||||||||||||||||    
T  14653727 aaaggggactctattaatcagtttatagataaaattaagttccaatctttttgacggttgaagacaaatcatcctaa 14653803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 25714641 - 25714547
Alignment:
Q  119 cttatagataaaattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccct 213  Q
    |||||||| |||||||||||  | || | ||| ||| ||||||||||||| ||||| ||| |||| | |||| | ||||||||||||||||||||    
T  25714641 cttatagacaaaattaagcttcaatcatattgttggctgaagacaaatcaccctaattttactttcaattattacatgtggtggcttaatcccct 25714547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 36275042 - 36274977
Alignment:
Q  30 tttatttgatctgactctcttttgtttggattgtttggcgtgaccagaatgctagagtctttcaac 95  Q
    |||| ||||| || |||| || ||||||||||||||| |||||| ||||||||||| | |||||||    
T  36275042 tttacttgatttggctcttttctgtttggattgtttgacgtgacaagaatgctagaatttttcaac 36274977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 27626208 - 27626144
Alignment:
Q  157 gaagacaaatcatcctaactttgcttttacttatgagatgtggtggcttaatcccctattatgtt 221  Q
    ||||||||||||| |||| |||||||||| |||  | ||||||| |||||||| ||| |||||||    
T  27626208 gaagacaaatcattctaattttgcttttaattagcatatgtggtagcttaatctccttttatgtt 27626144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 52162790 - 52162869
Alignment:
Q  105 attctattaatcaacttatagataaaattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgctttt 184  Q
    ||||||||||||||||||||||||||||||||||| | | |||| | ||||||||   |||||||||||| ||| |||||    
T  52162790 attctattaatcaacttatagataaaattaagctccaatgttttggatggttgaacgtaaatcatcctaattttactttt 52162869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 21394052 - 21393936
Alignment:
Q  52 tgtttggattgtttggcgtgaccagaatgctagagtctttcaacgtaaaggagattctattaatcaacttatagataaaattaagctcaagtctttttgg 151  Q
    |||||||||| ||||| ||| | |||||| ||| |||||   ||  || ||||| ||||||||||||||||||||| ||||||||||  | || || |||    
T  21394052 tgtttggattatttggtgtggcaagaatgttagggtcttcacacaaaagggagaatctattaatcaacttatagatgaaattaagcttcaatccttctgg 21393953  T
Q  152 tggttgaagacaaatca 168  Q
    ||||||||| |||||||    
T  21393952 tggttgaaggcaaatca 21393936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 39978319 - 39978389
Alignment:
Q  120 ttatagataaaattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttat 190  Q
    ||||||||||||||||| || | || ||||| ||||||||||||| ||||| ||  |||||||||| ||||    
T  39978319 ttatagataaaattaagttccaatccttttgatggttgaagacaactcatcatatttttgcttttaattat 39978389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 3452333 - 3452257
Alignment:
Q  114 atcaacttatagataaaattaagctcaagtctttttggtggttgaagacaaatcatcctaactttgcttttacttat 190  Q
    ||||||||||| |||||||||||||  | || || | |||||||||| |||| |||||||| |||| ||||| ||||    
T  3452333 atcaacttataaataaaattaagctacaatccttctagtggttgaaggcaaaccatcctaattttgtttttaattat 3452257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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