View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326_low_10 (Length: 503)

Name: NF1326_low_10
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326_low_10
NF1326_low_10
[»] chr1 (20 HSPs)
chr1 (29-481)||(6314295-6314734)
chr1 (371-483)||(26879625-26879739)
chr1 (339-485)||(18608585-18608723)
chr1 (369-482)||(50727593-50727709)
chr1 (366-479)||(7489902-7490017)
chr1 (369-485)||(7489956-7490074)
chr1 (339-479)||(18608771-18608913)
chr1 (396-483)||(40892548-40892637)
chr1 (364-483)||(33650397-33650519)
chr1 (366-421)||(52913034-52913089)
chr1 (366-415)||(2633444-2633493)
chr1 (341-448)||(52913175-52913283)
chr1 (413-485)||(2633362-2633436)
chr1 (419-485)||(40892512-40892579)
chr1 (438-485)||(2633554-2633603)
chr1 (413-484)||(34173316-34173389)
chr1 (364-409)||(1173087-1173131)
chr1 (364-433)||(2633540-2633609)
chr1 (364-409)||(40892576-40892621)
chr1 (244-288)||(4695299-4695343)
[»] chr4 (40 HSPs)
chr4 (341-482)||(45038370-45038513)
chr4 (341-483)||(41083248-41083392)
chr4 (343-483)||(41083053-41083195)
chr4 (364-484)||(12498837-12498959)
chr4 (339-483)||(40395098-40395244)
chr4 (339-479)||(2787889-2788030)
chr4 (349-483)||(12498618-12498755)
chr4 (339-411)||(51950543-51950615)
chr4 (349-448)||(53863353-53863452)
chr4 (364-483)||(2470125-2470246)
chr4 (366-475)||(12592187-12592297)
chr4 (342-483)||(9999288-9999431)
chr4 (417-479)||(9999500-9999564)
chr4 (417-485)||(2787944-2788012)
chr4 (349-483)||(11884614-11884751)
chr4 (417-485)||(45038386-45038456)
chr4 (339-409)||(17232003-17232073)
chr4 (341-483)||(24684242-24684383)
chr4 (367-479)||(25055884-25056000)
chr4 (368-479)||(40146955-40147067)
chr4 (396-483)||(46196367-46196456)
chr4 (375-485)||(7246049-7246161)
chr4 (364-408)||(12698010-12698052)
chr4 (370-484)||(21321993-21322109)
chr4 (412-485)||(24684253-24684326)
chr4 (349-429)||(11884817-11884897)
chr4 (366-409)||(2788173-2788216)
chr4 (454-485)||(11884673-11884704)
chr4 (417-485)||(41083111-41083181)
chr4 (454-485)||(46196367-46196398)
chr4 (364-426)||(12592407-12592469)
chr4 (417-480)||(17231990-17232055)
chr4 (341-419)||(40395293-40395371)
chr4 (339-409)||(45787226-45787296)
chr4 (402-484)||(25056151-25056235)
chr4 (413-483)||(40395305-40395377)
chr4 (339-484)||(53863510-53863658)
chr4 (364-480)||(9999507-9999623)
chr4 (450-482)||(24369309-24369341)
chr4 (455-483)||(51950468-51950496)
[»] chr6 (20 HSPs)
chr6 (339-483)||(17136843-17136989)
chr6 (339-483)||(21598638-21598784)
chr6 (341-483)||(35225397-35225541)
chr6 (349-483)||(10356464-10356600)
chr6 (341-483)||(21598444-21598588)
chr6 (342-483)||(24059666-24059807)
chr6 (339-479)||(9982673-9982815)
chr6 (364-483)||(10356260-10356381)
chr6 (339-427)||(364043-364130)
chr6 (339-480)||(17342633-17342776)
chr6 (349-483)||(9982872-9983008)
chr6 (412-485)||(21598502-21598577)
chr6 (351-479)||(13273270-13273399)
chr6 (366-483)||(3895705-3895822)
chr6 (339-391)||(2761494-2761546)
chr6 (417-485)||(10356472-10356542)
chr6 (339-390)||(17342534-17342585)
chr6 (370-481)||(35050804-35050917)
chr6 (352-421)||(35050731-35050800)
chr6 (396-481)||(35050715-35050802)
[»] chr2 (23 HSPs)
chr2 (339-484)||(25895108-25895255)
chr2 (341-483)||(31630066-31630208)
chr2 (364-485)||(36217161-36217281)
chr2 (339-480)||(5009160-5009308)
chr2 (339-483)||(5009366-5009510)
chr2 (364-483)||(44556524-44556645)
chr2 (341-483)||(9500904-9501048)
chr2 (349-480)||(29379895-29380028)
chr2 (339-485)||(31630268-31630414)
chr2 (364-479)||(36217220-36217331)
chr2 (364-431)||(3876955-3877022)
chr2 (364-475)||(4511396-4511508)
chr2 (352-421)||(1316038-1316107)
chr2 (339-390)||(11791791-11791842)
chr2 (339-483)||(33847626-33847771)
chr2 (364-408)||(36694390-36694432)
chr2 (369-409)||(39442453-39442494)
chr2 (366-479)||(14166408-14166521)
chr2 (454-486)||(25895165-25895197)
chr2 (418-485)||(36217155-36217223)
chr2 (244-288)||(36680941-36680985)
chr2 (100-136)||(36682447-36682483)
chr2 (349-409)||(36694516-36694576)
[»] chr5 (42 HSPs)
chr5 (339-482)||(16327291-16327434)
chr5 (339-483)||(28559234-28559380)
chr5 (364-483)||(25456275-25456395)
chr5 (366-483)||(35461655-35461774)
chr5 (339-483)||(16327097-16327243)
chr5 (363-485)||(32361165-32361289)
chr5 (339-485)||(17400737-17400887)
chr5 (339-483)||(1996141-1996287)
chr5 (362-479)||(4943115-4943235)
chr5 (349-483)||(35461435-35461571)
chr5 (349-421)||(14604268-14604340)
chr5 (371-480)||(25456499-25456609)
chr5 (364-479)||(35813516-35813632)
chr5 (364-479)||(14604072-14604186)
chr5 (364-421)||(23661882-23661939)
chr5 (364-421)||(23796631-23796688)
chr5 (339-448)||(12774341-12774452)
chr5 (364-480)||(23661881-23661997)
chr5 (364-480)||(23796573-23796689)
chr5 (364-424)||(35813575-35813635)
chr5 (339-390)||(7209882-7209933)
chr5 (417-485)||(16327155-16327225)
chr5 (371-479)||(20927848-20927958)
chr5 (364-497)||(1649407-1649540)
chr5 (342-448)||(5746131-5746237)
chr5 (366-448)||(12713106-12713188)
chr5 (417-485)||(35813509-35813578)
chr5 (402-483)||(40980710-40980793)
chr5 (342-409)||(5746302-5746369)
chr5 (454-485)||(14604122-14604153)
chr5 (370-405)||(14604349-14604384)
chr5 (454-485)||(16327348-16327379)
chr5 (364-480)||(19550101-19550219)
chr5 (454-485)||(25456332-25456363)
chr5 (364-426)||(35812193-35812255)
chr5 (454-483)||(19550376-19550405)
chr5 (362-390)||(4943237-4943265)
chr5 (362-390)||(5746129-5746157)
chr5 (160-212)||(18904147-18904199)
chr5 (412-485)||(28559441-28559516)
chr5 (364-392)||(37032975-37033003)
chr5 (341-433)||(37642845-37642937)
[»] chr3 (38 HSPs)
chr3 (341-480)||(252048-252189)
chr3 (339-433)||(32186665-32186759)
chr3 (339-485)||(25848490-25848638)
chr3 (364-483)||(18020039-18020160)
chr3 (376-483)||(47573694-47573803)
chr3 (362-483)||(26724227-26724348)
chr3 (339-448)||(40209712-40209819)
chr3 (349-479)||(46337505-46337637)
chr3 (339-483)||(40286441-40286585)
chr3 (349-485)||(40286235-40286373)
chr3 (339-483)||(47069527-47069673)
chr3 (339-483)||(47891312-47891458)
chr3 (216-286)||(12366282-12366352)
chr3 (342-480)||(27768308-27768448)
chr3 (364-428)||(36667297-36667361)
chr3 (143-214)||(12346124-12346195)
chr3 (339-410)||(14964903-14964974)
chr3 (417-485)||(36667290-36667360)
chr3 (339-433)||(47573888-47573981)
chr3 (364-429)||(7607703-7607767)
chr3 (339-444)||(14624239-14624342)
chr3 (352-421)||(28814063-28814132)
chr3 (352-409)||(30955011-30955067)
chr3 (352-409)||(30970823-30970879)
chr3 (417-483)||(45131438-45131506)
chr3 (339-480)||(13902996-13903139)
chr3 (364-483)||(25848575-25848697)
chr3 (370-483)||(28814021-28814136)
chr3 (339-480)||(36900066-36900209)
chr3 (417-485)||(14964887-14964956)
chr3 (339-390)||(28813931-28813982)
chr3 (454-485)||(40286496-40286527)
chr3 (448-483)||(47069772-47069807)
chr3 (364-425)||(46337501-46337562)
chr3 (364-409)||(47891124-47891169)
chr3 (455-483)||(26976375-26976403)
chr3 (368-408)||(42865981-42866021)
chr3 (417-482)||(43650044-43650111)
[»] chr8 (24 HSPs)
chr8 (339-483)||(41151404-41151550)
chr8 (339-483)||(27127877-27128019)
chr8 (339-480)||(36053039-36053181)
chr8 (364-488)||(27052402-27052528)
chr8 (364-483)||(24827356-24827477)
chr8 (363-483)||(27128091-27128213)
chr8 (349-483)||(20209462-20209598)
chr8 (349-483)||(20229170-20229306)
chr8 (349-483)||(24909606-24909742)
chr8 (339-483)||(6220376-6220521)
chr8 (364-421)||(15563848-15563904)
chr8 (413-485)||(24827414-24827488)
chr8 (364-483)||(6220182-6220303)
chr8 (349-479)||(41151608-41151741)
chr8 (365-483)||(9399815-9399935)
chr8 (371-479)||(24083256-24083365)
chr8 (364-422)||(41151684-41151742)
chr8 (423-485)||(6220240-6220304)
chr8 (366-480)||(27052613-27052729)
chr8 (364-448)||(15563880-15563964)
chr8 (378-479)||(38414597-38414699)
chr8 (426-485)||(27052613-27052674)
chr8 (364-421)||(15564058-15564115)
chr8 (349-445)||(36052874-36052970)
[»] scaffold0279 (1 HSPs)
scaffold0279 (339-484)||(1127-1274)
[»] chr7 (30 HSPs)
chr7 (339-484)||(27576523-27576670)
chr7 (365-484)||(6222078-6222198)
chr7 (339-479)||(11975451-11975592)
chr7 (349-483)||(44293974-44294110)
chr7 (364-484)||(29710537-29710659)
chr7 (364-483)||(11975658-11975779)
chr7 (341-483)||(27280613-27280757)
chr7 (349-448)||(4048415-4048514)
chr7 (364-421)||(30662158-30662215)
chr7 (417-483)||(31453052-31453120)
chr7 (343-481)||(41666145-41666285)
chr7 (339-390)||(29019342-29019393)
chr7 (423-483)||(41666360-41666422)
chr7 (339-483)||(42312758-42312904)
chr7 (339-433)||(3198262-3198356)
chr7 (364-483)||(29710319-29710440)
chr7 (423-485)||(11975657-11975721)
chr7 (364-421)||(22750319-22750376)
chr7 (364-429)||(43258299-43258364)
chr7 (339-480)||(6694533-6694675)
chr7 (364-448)||(42313008-42313092)
chr7 (362-409)||(4048217-4048264)
chr7 (417-485)||(30869610-30869680)
chr7 (413-485)||(42312816-42312890)
chr7 (412-483)||(6694735-6694808)
chr7 (339-482)||(30869592-30869737)
chr7 (424-482)||(6069278-6069338)
chr7 (341-390)||(6694724-6694773)
chr7 (364-409)||(31453059-31453104)
chr7 (364-421)||(46713214-46713271)
[»] scaffold0157 (2 HSPs)
scaffold0157 (364-484)||(21518-21640)
scaffold0157 (349-483)||(21722-21859)
[»] scaffold0018 (3 HSPs)
scaffold0018 (339-484)||(161597-161744)
scaffold0018 (350-483)||(161403-161538)
scaffold0018 (417-485)||(161461-161531)
[»] scaffold0578 (1 HSPs)
scaffold0578 (370-480)||(2400-2517)
[»] scaffold0002 (1 HSPs)
scaffold0002 (396-479)||(12294-12377)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 29 - 481
Target Start/End: Complemental strand, 6314734 - 6314295
Alignment:
Q  29 ataaggagcctcgcatattattaattatgagatttgtcttaaccgaattgttaagcagagacatcaaacaagcaaacaaaagtctcaagcacatactaaa 128  Q
    |||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6314734 ataaggagcctcgcatattatta----tgaaatttgtcttaaccgaattgttaagcagagacatcaaacaagcaaacaaaagtctcaagcacatactaaa 6314639  T
Q  129 aattaaaactataccatctcgtaatagagaggaccataacatagattaatagtcatatgttttttaatatacaagatcctcatttccctcatttctaagg 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         |||||    
T  6314638 aattaaaactataccatctcgtaatagagaggaccataacatagattaatagtcatatgttttttaatatacaagatcgtcatttc---------taagg 6314548  T
Q  229 tgagtggagcgcatacttgcatctctatagagaaattaatgatatgagcataataactagtactaacttgagctttcaaaatgaactgagaaacttagaa 328  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  6314547 tgagtggagcgcatacttacatctctatagagaaattaatgatatgaacataataactagtactaacttgagctttcaaaatgaacagagatacttagaa 6314448  T
Q  329 ggacaatggtttgaaaacgcttacaaacat--aaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgact 426  Q
    ||||||||||||||||||| ||||||||||  || |||||||| ||||   |||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  6314447 ggacaatggtttgaaaacgtttacaaacataaaaagaacttatatgtgtttaaaataactt-aaacattaatctgttacaaactttaaacttaaa-gact 6314350  T
Q  427 tatgtgtcataaaaataacttatgacaaatctgttacaaacctcaaacttaaagg 481  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||    
T  6314349 tatgtgtgaaaaaaataatttaagacaaatctgttacaaacctcaaacttaaagg 6314295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 371 - 483
Target Start/End: Original strand, 26879625 - 26879739
Alignment:
Q  371 tgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaacc 468  Q
    ||||| ||||||||||||||  || |||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||  ||||| |||||||||||||||    
T  26879625 tgtgatcaaaataacttaaaggatcaatctgtttcaaacttcaaacttaaaagacttatgtgtgataaaaataacttaaatgaccaatctgttacaaacc 26879724  T
Q  469 tcaaacttaaaggac 483  Q
    |||||||||||||||    
T  26879725 tcaaacttaaaggac 26879739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 339 - 485
Target Start/End: Complemental strand, 18608723 - 18608585
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||| ||| | ||||| |||||||||||||||||||||  || |||||||||||||| | ||| ||||| ||||||||||| || |    
T  18608723 ttgaaaacatttacaaacttaaaggacttaagtgtgaccaaaataacttaaagaatcaatctgttacaaacctcaaacttaaaggacttatgtgttatca 18608624  T
Q  439 aaataacttatgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    |        | ||||||||||||||||||||||||||||||||||||    
T  18608623 a--------aggacaaatctgttacaaacctcaaacttaaaggactt 18608585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 482
Target Start/End: Original strand, 50727593 - 50727709
Alignment:
Q  369 tgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaattt-aaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaa 465  Q
    |||||||| |||||||||||||| |  |||||||||||||| |||||||| ||| ||||||||||  |  ||||||||||  ||||||||| ||||| ||    
T  50727593 tgtgtgactaaaataacttaaaagacaaatctgttacaaaccttaaatttaaaaggacttatgtgcgactaaaataacttaaatgacaaatttgttagaa 50727692  T
Q  466 acctcaaacttaaagga 482  Q
    |||||||||||||||||    
T  50727693 acctcaaacttaaagga 50727709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 366 - 479
Target Start/End: Complemental strand, 7490017 - 7489902
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttac 463  Q
    |||||||||||||||||||||||||  ||||||||||||||||| | ||| ||||| ||||||||||| |  ||||||| ||  ||||  ||||| | ||    
T  7490017 ttatgtgtgaccaaaataacttaaatgattaatctgttacaaacctcaaacttaaaggacttatgtgtgactaaaataatttaaatgatcaatctctcac 7489918  T
Q  464 aaacctcaaacttaaa 479  Q
    ||||||||||||||||    
T  7489917 aaacctcaaacttaaa 7489902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 485
Target Start/End: Complemental strand, 7490074 - 7489956
Alignment:
Q  369 tgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaaa 466  Q
    |||||||||||||||| |||||  || ||||| |||||||| | ||| ||||| || |||||||| |  |||||||||||  |||  |||||||||||||    
T  7490074 tgtgtgaccaaaataatttaaaggatcaatctattacaaacctcaaacttaaaggatttatgtgtgaccaaaataacttaaatgattaatctgttacaaa 7489975  T
Q  467 cctcaaacttaaaggactt 485  Q
    |||||||||||||||||||    
T  7489974 cctcaaacttaaaggactt 7489956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 479
Target Start/End: Original strand, 18608771 - 18608913
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| ||| | |||||| | ||| ||||||||||||||| || |||||||||||||| | |||  |||| ||||||||||| || |    
T  18608771 ttgaaaacgtttacaaacttaaaggacttatctatgatcaaaataacttaaaatatcaatctgttacaaacatcaaacgtaaacgacttatgtgtgatca 18608870  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaa 479  Q
    ||||| |||  | ||||||| ||||| |||||| |||||||||    
T  18608871 aaatagcttaaaggacaaatttgttataaaccttaaacttaaa 18608913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 483
Target Start/End: Original strand, 40892548 - 40892637
Alignment:
Q  396 aatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||||||| | ||||||||| ||||||||||| |  ||||||||||  ||||  ||| |||||||||||||||||| |||||||    
T  40892548 aatctgttacaaacctcaaatttaaaggacttatgtgtgaccaaaataacttaaatgatcaatatgttacaaacctcaaactcaaaggac 40892637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 483
Target Start/End: Complemental strand, 33650519 - 33650397
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaac-attaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgt 460  Q
    ||||| ||||||||||||||||||||||  |  ||| ||||||| ||   ||| ||||||||||||||||  |  |||||||||||   ||| |||||||    
T  33650519 acttacgtgtgaccaaaataacttaaaaggaccaatatgttacataccacaaacttaaatgacttatgtgggaacaaaataacttaaaggaccaatctgt 33650420  T
Q  461 tacaaacctcaaacttaaaggac 483  Q
    || ||||||||||||||||||||    
T  33650419 tataaacctcaaacttaaaggac 33650397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 421
Target Start/End: Complemental strand, 52913089 - 52913034
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    |||||||||||||||||||||||||  | ||||||||||||||||| ||| |||||    
T  52913089 ttatgtgtgaccaaaataacttaaaggactaatctgttacaaacttcaaacttaaa 52913034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 2633444 - 2633493
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaa 415  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| |||||    
T  2633444 ttatgtgtgaccaaaataactaaaagaattaatctgttacaaaccttaaa 2633493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 448
Target Start/End: Complemental strand, 52913283 - 52913175
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctg-ttacaaactttaaatttaaatgacttatgtgtcataaa 439  Q
    ||||||| |||||||| ||| | ||||||||||||| | |||||||||||  |  |||||| |||||||| | ||| ||||| ||||||||||| |  ||    
T  52913283 gaaaacgtttacaaacttaaaggacttatgtgtgactagaataacttaaaggaccaatctgtttacaaacctcaaacttaaaggacttatgtgtgaccaa 52913184  T
Q  440 aataactta 448  Q
    |||||||||    
T  52913183 aataactta 52913175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 2633362 - 2633436
Alignment:
Q  413 aaatttaaatgacttatgtgtcataaaaataacttatg--acaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||| |||||||| || | ||||||||||||    |||||| ||||||||||||||||||||||| ||||    
T  2633362 aaatttaaaggacttatgcgtgacaaaaataacttaaagaacaaatatgttacaaacctcaaacttaaagaactt 2633436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 485
Target Start/End: Original strand, 40892512 - 40892579
Alignment:
Q  419 aaatgacttatgtgtcataaaaataacttat-gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||||||| ||  ||||||||||  | | |||||||||||||||||||| |||||||||||    
T  40892512 aaatgacttatgtgtgatcgaaataacttaaagtccaatctgttacaaacctcaaatttaaaggactt 40892579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 485
Target Start/End: Original strand, 2633554 - 2633603
Alignment:
Q  438 aaaataactta--tgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    |||||||||||  |||| ||||||| ||||||||||||||||||||||||    
T  2633554 aaaataacttaaatgaccaatctgtcacaaacctcaaacttaaaggactt 2633603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 484
Target Start/End: Complemental strand, 34173389 - 34173316
Alignment:
Q  413 aaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggact 484  Q
    ||||||||| ||||||| ||| |  |||||||||||   ||| |||||||||||||| ||||||||||||||||    
T  34173389 aaatttaaaggacttatttgtaaccaaaataacttaaaggaccaatctgttacaaacatcaaacttaaaggact 34173316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 1173131 - 1173087
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    |||||||||||||||||||||||||||| | |||||||||| ||||    
T  1173131 acttatgtgtgaccaaaataacttaaaa-actaatctgttataaac 1173087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 433
Target Start/End: Original strand, 2633540 - 2633609
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgt 433  Q
    |||||| ||||||||||||||||||||  |  ||||||| |||||| | ||| ||||| |||||||||||    
T  2633540 acttatatgtgaccaaaataacttaaatgaccaatctgtcacaaacctcaaacttaaaggacttatgtgt 2633609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 40892576 - 40892621
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    |||||||||||||||||||||||||||  || ||| ||||||||||    
T  40892576 acttatgtgtgaccaaaataacttaaatgatcaatatgttacaaac 40892621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 4695299 - 4695343
Alignment:
Q  244 cttgcatctctatagagaaattaatgatatgagcataataactag 288  Q
    |||| |||||||||||| ||||||||| |||| ||||||||||||    
T  4695299 cttgtatctctatagaggaattaatgacatgaccataataactag 4695343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 341 - 482
Target Start/End: Original strand, 45038370 - 45038513
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaa 440  Q
    ||||||| |||||||| ||| | |||||||||||||||||||||||||||  |  |||||||||||||| | ||| ||||| ||||||| ||| | ||||    
T  45038370 gaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatttgtgacaaaa 45038469  T
Q  441 ataactt--atgacaaatctgttacaaacctcaaacttaaagga 482  Q
    |||||||  ||||| ||||| |||||||||||||||||||||||    
T  45038470 ataacttaaatgaccaatctattacaaacctcaaacttaaagga 45038513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 341 - 483
Target Start/End: Original strand, 41083248 - 41083392
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaa 440  Q
    ||||||| |||||||| ||| | |||||||||||||| ||||||||||||| |  |||||||||| ||| | ||| ||||||||| ||| ||| |  |||    
T  41083248 gaaaacgtttacaaacttaaaggacttatgtgtgaccgaaataacttaaaagaccaatctgttacgaacctcaaacttaaatgacatatatgtgaccaaa 41083347  T
Q  441 ataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||  | ||| ||||||||||||||||||||||||||||||    
T  41083348 ataacttaaaggaccaatctgttacaaacctcaaacttaaaggac 41083392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 343 - 483
Target Start/End: Complemental strand, 41083195 - 41083053
Alignment:
Q  343 aaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaat 442  Q
    ||||| |||||||| ||| | |||||||||||| ||||||||||||||  |  ||| |||||||||||| ||| ||||| ||||||| ||| | ||||||    
T  41083195 aaacgtttacaaacttaaaggacttatgtgtgatcaaaataacttaaaggaccaatatgttacaaacttcaaacttaaaggacttatatgtgacaaaaat 41083096  T
Q  443 aactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||  ||||  ||| ||||||||||||||||||||||||||    
T  41083095 aacttaaatgatcaatatgttacaaacctcaaacttaaaggac 41083053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 364 - 484
Target Start/End: Original strand, 12498837 - 12498959
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    |||||||||||||| |||||| |||||  |||| |||||||||||  | ||| ||||| ||||||||||| || ||||||||||  ||||  ||||| ||    
T  12498837 acttatgtgtgaccgaaataatttaaaggattagtctgttacaaatctcaaacttaaaggacttatgtgtgattaaaataacttaaatgatcaatctatt 12498936  T
Q  462 acaaacctcaaacttaaaggact 484  Q
    |||||||||||||||||||||||    
T  12498937 acaaacctcaaacttaaaggact 12498959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 40395244 - 40395098
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    |||||||||||||||||| |||   | |||||||||||||||||||||||||  | |||| |||||||||| | ||| ||||| ||||||| ||| | ||    
T  40395244 ttgaaaacgcttacaaacttaaaagatttatgtgtgaccaaaataacttaaagaactaatatgttacaaacctcaaacttaaaggacttatatgtgacaa 40395145  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||||| |  | ||| ||||||| ||||| ||||||||||||||||    
T  40395144 aaataacctaaaggaccaatctgtaacaaatctcaaacttaaaggac 40395098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 479
Target Start/End: Complemental strand, 2788030 - 2787889
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||| |||   ||||||||||||||||||||||||||||||  ||| |||||||||| ||||| ||||||||||||||||  |  |    
T  2788030 ttgaaaacatttacaaacttaaatgacttatgtgtgaccaaaataacttaaaaca--aatatgttacaaaccttaaacttaaatgacttatgtgcaacca 2787933  T
Q  439 aaataacttat---gacaaatctgttacaaacctcaaacttaaa 479  Q
    |||||||||||   |||  |||| |||||||| |||||||||||    
T  2787932 aaataacttataaagaccgatctattacaaacatcaaacttaaa 2787889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 483
Target Start/End: Complemental strand, 12498755 - 12498618
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | | |||||||||||||||||||||||||| || ||| | || ||||| ||||| ||||| ||||||||||| | |||||||||||     
T  12498755 ttacaaacttaaaggatttatgtgtgaccaaaataacttaaaagatcaatatattgcaaaccttaaacttaaaagacttatgtgtgacaaaaataactta 12498656  T
Q  448 --atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
      | ||| ||||| |||||||||||||| |||| ||||    
T  12498655 aaaggaccaatctattacaaacctcaaatttaatggac 12498618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 51950615 - 51950543
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactt 411  Q
    ||||||||  |||||||| ||| | |||||||||||||||||||||||||||| || |||||| |||||||||    
T  51950615 ttgaaaacatttacaaacttaaaggacttatgtgtgaccaaaataacttaaaagatcaatctgctacaaactt 51950543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 448
Target Start/End: Complemental strand, 53863452 - 53863353
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta 448  Q
    |||||||| ||| | ||||||||||||| |||||||||||||  |  |||||||||||||  |  || ||||||||||||||||| || |||||||||||    
T  53863452 ttacaaacttaaaggacttatgtgtgactaaaataacttaaaggaccaatctgttacaaatctcgaacttaaatgacttatgtgtgatcaaaataactta 53863353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 483
Target Start/End: Original strand, 2470125 - 2470246
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    |||||||||||||||||||||||||||  |  ||| | |||||||| | ||||||||| ||||||| ||| |  ||||||||||  | ||| ||||| ||    
T  2470125 acttatgtgtgaccaaaataacttaaaggaccaatatattacaaacctcaaatttaaaggacttatatgtgaccaaaataacttaaaggaccaatctatt 2470224  T
Q  462 acaaacctcaaacttaaaggac 483  Q
    |||||||| ||||| |||||||    
T  2470225 acaaaccttaaactgaaaggac 2470246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 366 - 475
Target Start/End: Complemental strand, 12592297 - 12592187
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt-atgacaaatctgttaca 464  Q
    |||||||||||||||||||||||||  || ||||||||||||| || |||   |||| |||||||| | |  |||||||||| |  || |||||||||||    
T  12592297 ttatgtgtgaccaaaataacttaaatgatcaatctgttacaaatttcaaacacaaataacttatgtttaaccaaaataacttaaaaaccaatctgttaca 12592198  T
Q  465 aacctcaaact 475  Q
    |||||||||||    
T  12592197 aacctcaaact 12592187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 483
Target Start/End: Complemental strand, 9999431 - 9999288
Alignment:
Q  342 aaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaa-tttaaatgacttatgtgtcataaaa 440  Q
    |||||| |||||||| ||| ||| |||||||||||||| ||||||||||| |  ||| ||||| |||| | ||| |||||| ||||||||||| || | |    
T  9999431 aaaacgtttacaaacttaaagaatttatgtgtgaccaatataacttaaaa-accaatatgttagaaacatcaaactttaaaggacttatgtgtgatcaga 9999333  T
Q  441 ataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    | ||| |  | || ||||||||||||||||||| |||||||||||    
T  9999332 acaacctaaaggataaatctgttacaaacctcagacttaaaggac 9999288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 9999500 - 9999564
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaa 479  Q
    ||||||||||||| ||| | ||||||||||||  |||| ||||||||||||||||||||||||||    
T  9999500 ttaaatgacttatatgtgacaaaaataacttaaatgaccaatctgttacaaacctcaaacttaaa 9999564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 2788012 - 2787944
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttatgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||||||||| |  |||||||||||  |||||| |||||||||||| ||||||||| |||||    
T  2788012 ttaaatgacttatgtgtgaccaaaataacttaaaacaaatatgttacaaaccttaaacttaaatgactt 2787944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 483
Target Start/End: Complemental strand, 11884751 - 11884614
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| |||||||  |||||| ||||||| || ||  |  |||||||||||||| | ||| ||||| ||||||||||| | |||||||||||     
T  11884751 ttacaaacttaaagaacttagttgtgactaaaataaattgaaggaccaatctgttacaaacctcaaacttaaaggacttatgtgtgacaaaaataactta 11884652  T
Q  448 --atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
      | ||  ||| |||||||||||||||| |||||||||    
T  11884651 aaaggattaatttgttacaaacctcaaatttaaaggac 11884614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 45038386 - 45038456
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||| ||||||||||| |  |||||||||||   ||| ||||||||||||||||||||||||||||||||    
T  45038386 ttaaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggactt 45038456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 17232073 - 17232003
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    ||||||||| |||||||| |||   |||||||||||| ||||||||||||||| | | |||||||||||||    
T  17232073 ttgaaaacgtttacaaacttaaaagacttatgtgtgatcaaaataacttaaaagacttatctgttacaaac 17232003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 483
Target Start/End: Original strand, 24684242 - 24684383
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaa 440  Q
    ||||||| ||| |||| ||| | |||||||||||||  ||||||||||||||   |||||||||||||| | ||| |||||  ||||| |||| ||  ||    
T  24684242 gaaaacgtttataaacttaaaggacttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtaat-caa 24684338  T
Q  441 ataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||  | ||| ||||| ||| ||||||||||||||||||||    
T  24684339 ataacttaaaagaccaatctattataaacctcaaacttaaaggac 24684383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 479
Target Start/End: Complemental strand, 25056000 - 25055884
Alignment:
Q  367 tatgtgtgaccaaaataacttaaaacattaatctgttacaaact--ttaaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgtta 462  Q
    |||||||||| ||||||||||||   |  ||||||||||||| |  | ||| ||||| || ||||||||||  |||||||||||   ||||||||| |||    
T  25056000 tatgtgtgacaaaaataacttaatggaacaatctgttacaaaatcctcaaacttaaaggatttatgtgtcaccaaaataacttaaaggacaaatctatta 25055901  T
Q  463 caaacctcaaacttaaa 479  Q
    |||||||||||||||||    
T  25055900 caaacctcaaacttaaa 25055884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 479
Target Start/End: Complemental strand, 40147067 - 40146955
Alignment:
Q  368 atgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaa 465  Q
    |||||||||||||||||| |||   || ||||| |||||||| | ||| || || ||||||||||| |  |||||||||||  |||||||||| | ||||    
T  40147067 atgtgtgaccaaaataacctaagg-atcaatctattacaaacctcaaacttcaaggacttatgtgtgaccaaaataacttaaatgacaaatctatcacaa 40146969  T
Q  466 acctcaaacttaaa 479  Q
    ||||||||||||||    
T  40146968 acctcaaacttaaa 40146955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 483
Target Start/End: Original strand, 46196367 - 46196456
Alignment:
Q  396 aatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||||||| | ||| ||||| ||||||||| | | |||||||||||  |||||  |||||||| |||| |||||||||||||||    
T  46196367 aatctgttacaaacctcaaacttaaaggacttatgtatgacaaaaataacttacatgacttatctgttataaacgtcaaacttaaaggac 46196456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 485
Target Start/End: Complemental strand, 7246161 - 7246049
Alignment:
Q  375 accaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaacctcaa 472  Q
    |||||||| |||||||  || |||||||||||||  | ||| ||||| ||||||||||| |  ||||||||||  | ||| ||| |||||||||  ||||    
T  7246161 accaaaattacttaaaggatcaatctgttacaaatataaaacttaaaggacttatgtgtaaccaaaataacttaaacgaccaatttgttacaaatatcaa 7246062  T
Q  473 acttaaaggactt 485  Q
    |||||||||||||    
T  7246061 acttaaaggactt 7246049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 12698010 - 12698052
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaa 408  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  12698010 acttatgtgtgaccaaaataacttaaa--attaatctgttacaaa 12698052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 484
Target Start/End: Original strand, 21321993 - 21322109
Alignment:
Q  370 gtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaac 467  Q
    |||| |||||||||| |||||  |  ||||| |||||||| | ||| ||||| ||||||| ||| |  |||||||||||   || |||| ||||||||||    
T  21321993 gtgtaaccaaaataagttaaaggaccaatcttttacaaacctcaaacttaaaggacttatatgtgaccaaaataacttaaaagaaaaatgtgttacaaac 21322092  T
Q  468 ctcaaacttaaaggact 484  Q
    |||||||||||||||||    
T  21322093 ctcaaacttaaaggact 21322109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 485
Target Start/End: Original strand, 24684253 - 24684326
Alignment:
Q  412 taaatttaaatgacttatgtgtcataaaaataacttatgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    |||| ||||| ||||||||||| |   ||||||||||  || ||||||||||||||||||||||||||| ||||    
T  24684253 taaacttaaaggacttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaactt 24684326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 429
Target Start/End: Original strand, 11884817 - 11884897
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttat 429  Q
    |||||||| ||| |||||||| |||||||||| ||| |||||  |  |||||||||||||||| ||| ||||| |||||||    
T  11884817 ttacaaacttaaagaacttatttgtgaccaaattaatttaaaggaccaatctgttacaaacttaaaacttaaaggacttat 11884897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 2788173 - 2788216
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    |||||||||||||||||||||||||| || ||| ||||||||||    
T  2788173 ttatgtgtgaccaaaataacttaaaatatcaatttgttacaaac 2788216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 485
Target Start/End: Complemental strand, 11884704 - 11884673
Alignment:
Q  454 aatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||||||||||||||||||||||||    
T  11884704 aatctgttacaaacctcaaacttaaaggactt 11884673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 41083181 - 41083111
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||| ||||||||||| || |||||||||||   ||| ||| |||||||||| |||||||||||||||||    
T  41083181 ttaaaggacttatgtgtgatcaaaataacttaaaggaccaatatgttacaaacttcaaacttaaaggactt 41083111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 485
Target Start/End: Original strand, 46196367 - 46196398
Alignment:
Q  454 aatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||||||||||||||||||||||||    
T  46196367 aatctgttacaaacctcaaacttaaaggactt 46196398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 426
Target Start/End: Original strand, 12592407 - 12592469
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgact 426  Q
    |||||||| ||||||| ||||||||||| || ||||| |||||||||| ||| ||||| ||||    
T  12592407 acttatgtatgaccaatataacttaaaagatcaatctattacaaacttcaaacttaaaggact 12592469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 17232055 - 17231990
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaag 480  Q
    ||||| ||||||||||| || |||||||||||   |||  ||||||||||||||||||||||||||    
T  17232055 ttaaaagacttatgtgtgatcaaaataacttaaaagacttatctgttacaaacctcaaacttaaag 17231990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 40395293 - 40395371
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaattta 419  Q
    ||||||| |||||||  ||| | |||||||||||||  ||||||||||||  | ||||||||||||||| | |||||||    
T  40395293 gaaaacgtttacaaatttaaaggacttatgtgtgacagaaataacttaaaggactaatctgttacaaacctcaaattta 40395371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 409
Target Start/End: Original strand, 45787226 - 45787296
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    ||||||||| || ||||| |||  ||||||||||||| ||||||||||||||| | |||| | ||||||||    
T  45787226 ttgaaaacgtttgcaaacttaaaaaacttatgtgtgatcaaaataacttaaaaaactaatttattacaaac 45787296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 484
Target Start/End: Original strand, 25056151 - 25056235
Alignment:
Q  402 ttacaaactttaaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggact 484  Q
    |||||||| | ||| ||||||||||| ||| |||  |||||||||||   ||| ||| |||||||||||||||||||||| ||||    
T  25056151 ttacaaacctcaaacttaaatgacttttgtctcaccaaaataacttaaaagaccaatttgttacaaacctcaaacttaaaagact 25056235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 483
Target Start/End: Original strand, 40395305 - 40395377
Alignment:
Q  413 aaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||||||| ||||||||||| | | ||||||||||   ||| |||||||||||||||||||| ||| |||||    
T  40395305 aaatttaaaggacttatgtgtgacagaaataacttaaaggactaatctgttacaaacctcaaatttagaggac 40395377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 484
Target Start/End: Original strand, 53863510 - 53863658
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaa-tttaaatgacttatgtgtcata 437  Q
    ||||||||  |||||||| ||| | |||||||  ||||||||||||||||||  |  ||| |||||||| | | ||| || ||| ||||||||||| |      
T  53863510 ttgaaaacttttacaaacttaaaggacttatgcatgaccaaaataacttaaaggaccaatttgttacaaccctcaaacttaaaaggacttatgtgtgact 53863609  T
Q  438 aaaataactt--atgacaaatctgttacaaacctcaaacttaaaggact 484  Q
    ||||||||||  | ||| ||||| |||||||| | ||||||||||||||    
T  53863610 aaaataacttaaacgaccaatctattacaaacttgaaacttaaaggact 53863658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 480
Target Start/End: Original strand, 9999507 - 9999623
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    |||||| |||||| |||||||||||||  |  |||||||||||||| | ||| |||||  ||| |||||| |  ||||||||||  ||||| ||||| ||    
T  9999507 acttatatgtgacaaaaataacttaaatgaccaatctgttacaaacctcaaacttaaa--actaatgtgtgaccaaaataacttaaatgaccaatctatt 9999604  T
Q  462 acaaacctcaaacttaaag 480  Q
    |||||| || |||||||||    
T  9999605 acaaacttctaacttaaag 9999623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 24369309 - 24369341
Alignment:
Q  450 gacaaatctgttacaaacctcaaacttaaagga 482  Q
    ||||||||| |||||||||||||||||||||||    
T  24369309 gacaaatctattacaaacctcaaacttaaagga 24369341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 483
Target Start/End: Complemental strand, 51950496 - 51950468
Alignment:
Q  455 atctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||||||||||||||||||||||    
T  51950496 atctgttacaaacctcaaacttaaaggac 51950468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 17136989 - 17136843
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| |||   |||||||||||||||||||||||||||  ||||||||||||||||| | ||| ||||||||||||||||  |  |    
T  17136989 ttgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaagaattaatctgttacaaacctcaaacttaaatgacttatgtgagacca 17136890  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||  | ||| ||||| |||||||||||||| |||||||||    
T  17136889 aaataacttaaaggactaatctattacaaacctcaaatttaaaggac 17136843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 483
Target Start/End: Original strand, 21598638 - 21598784
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| ||| | |||||||||||||||||||||||||||  |  ||| ||||||||||   ||| ||||| ||||||||||  |  |    
T  21598638 ttgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaaccacaaacttaaaggacttatgtgagaaca 21598737  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||  | ||| ||||||||||||||||||||||||||||||    
T  21598738 aaataacttaaaggaccaatctgttacaaacctcaaacttaaaggac 21598784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 341 - 483
Target Start/End: Complemental strand, 35225541 - 35225397
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaa 440  Q
    ||||||| |||||||| ||| |||||||||||||| || |||||||||||  |  |||||||||||||| ||||| ||||| || |||||| | |  |||    
T  35225541 gaaaacgtttacaaacttaaagaacttatgtgtgatcagaataacttaaaggaccaatctgttacaaaccttaaacttaaaggatttatgtatgaccaaa 35225442  T
Q  441 ataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||  | ||| ||| ||||||||||||||||||||||||||    
T  35225441 ataacttaaaggaccaatttgttacaaacctcaaacttaaaggac 35225397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 10356464 - 10356600
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | ||||||||||| | |||||||||||||| |  |||||||||||||  | ||| ||||| ||||||||||| |  |||||||| |     
T  10356464 ttacaaacttaaaggacttatgtgtggcaaaaataacttaaaagaccaatctgttacaaatctcaaacttaaaggacttatgtgttaccaaaataaccta 10356563  T
Q  448 -atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
     | ||| |||||||||||||| |||||||||||||||    
T  10356564 aaggaccaatctgttacaaacgtcaaacttaaaggac 10356600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 341 - 483
Target Start/End: Complemental strand, 21598588 - 21598444
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaa 440  Q
    ||||||| ||| |||| ||| | ||||||||| || ||||||||||||||  |  |||||||||||||| | ||| ||||| ||||||||||  |  |||    
T  21598588 gaaaacgtttataaacttaaaggacttatgtgggatcaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatgtgcaaccaaa 21598489  T
Q  441 ataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||  | ||| ||||||||| ||||||||||||||||||||    
T  21598488 ataacttaaaggaccaatctgttataaacctcaaacttaaaggac 21598444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 483
Target Start/End: Complemental strand, 24059807 - 24059666
Alignment:
Q  342 aaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaa 441  Q
    |||||| |||||||| ||| | ||||||||||||||||||||| |||||  || ||||||||| |||| | ||| ||||| ||||||||||     |||     
T  24059807 aaaacgtttacaaacttaaaggacttatgtgtgaccaaaataatttaaatgatcaatctgttataaacctcaaacttaaaggacttatgtggggccaaag 24059708  T
Q  442 taacttatgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||  |  ||| ||||||||||||||||||||||||||    
T  24059707 taacttaaaatcaatatgttacaaacctcaaacttaaaggac 24059666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 339 - 479
Target Start/End: Complemental strand, 9982815 - 9982673
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| |||   ||||||||| ||||||||||||| |||  || |||||||||||||  | ||| ||||| ||||||||||| || |    
T  9982815 ttgaaaacgtttacaaacttaaaagacttatgtgcgaccaaaataactcaaaggatcaatctgttacaaaactcaaacttaaaggacttatgtgtgatca 9982716  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaa 479  Q
    |||||| ||  | ||  ||| ||||||||||||||||||||||    
T  9982715 aaataatttaaaggatgaatatgttacaaacctcaaacttaaa 9982673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 483
Target Start/End: Complemental strand, 10356381 - 10356260
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    ||||| |||||||||||||||||||||  |  |||||||||||||  | ||| ||||| ||||||||||| |  ||||||| ||  | ||| ||| ||||    
T  10356381 acttaagtgtgaccaaaataacttaaagaaccaatctgttacaaatatcaaacttaaaggacttatgtgtgaccaaaataatttaaaggactaatttgtt 10356282  T
Q  462 acaaacctcaaacttaaaggac 483  Q
    ||||||||||||||||||||||    
T  10356281 acaaacctcaaacttaaaggac 10356260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 427
Target Start/End: Complemental strand, 364130 - 364043
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgactt 427  Q
    ||||||| | |||||||| ||| |||||||| ||||||||||| ||||||||| || |||||||||||||| ||||| ||||| |||||    
T  364130 ttgaaaatgtttacaaacttaaagaacttatttgtgaccaaaacaacttaaaa-atcaatctgttacaaaccttaaacttaaaggactt 364043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 480
Target Start/End: Original strand, 17342633 - 17342776
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| ||| | |||||||||||||| ||||||||||||  |  ||  |||||||||| | ||| ||||| ||||||||| | |  |    
T  17342633 ttgaaaacgtttacaaacttaaaggacttatgtgtgaccgaaataacttaaaggaccaacatgttacaaacctcaaacttaaaagacttatgtattacca 17342732  T
Q  439 aaataacttat--gacaaatctgttacaaacctcaaacttaaag 480  Q
    ||||||||||   ||| ||  |||||||||||||||||||||||    
T  17342733 aaataacttaaaggaccaacatgttacaaacctcaaacttaaag 17342776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 9982872 - 9983008
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta 448  Q
    |||||||| ||| | ||||||||| ||| |||| ||||||||  |  ||| ||||||||||| |||| ||||| ||||||||||| |  |||||||||||    
T  9982872 ttacaaacttaaaggacttatgtgagacaaaaagaacttaaaggaccaatatgttacaaactctaaacttaaaggacttatgtgtgaccaaaataactta 9982971  T
Q  449 t--gacaaatctgttacaaacctcaaacttaaaggac 483  Q
       ||  ||| |||||||| |||||||||||||||||    
T  9982972 aaggatcaatttgttacaatcctcaaacttaaaggac 9983008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 485
Target Start/End: Complemental strand, 21598577 - 21598502
Alignment:
Q  412 taaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    |||| ||||| ||||||||||  || |||||||||||   ||| ||||||||||||||||||||||||||||||||    
T  21598577 taaacttaaaggacttatgtgggatcaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggactt 21598502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 479
Target Start/End: Original strand, 13273270 - 13273399
Alignment:
Q  351 acaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataact--ta 448  Q
    |||||| ||| ||||||||||||||| |||||||||||||  |  |||||||||||||| | ||| ||||| || |||||||| | |||||||| |   |    
T  13273270 acaaacttaaagaacttatgtgtgacaaaaataacttaaatgaccaatctgttacaaac-taaaacttaaaggatttatgtgtgacaaaaataattaaaa 13273368  T
Q  449 tgacaaatctgttacaaacctcaaacttaaa 479  Q
     ||| | |||||||||| |||||||||||||    
T  13273369 ggactattctgttacaatcctcaaacttaaa 13273399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 483
Target Start/End: Original strand, 3895705 - 3895822
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttatgaca--aatctgttac 463  Q
    ||||||||||  |||||||||||||  | |||| ||||||||| |||| ||||||| |||||||||||   |  |||||||||  | |  ||||| ||||    
T  3895705 ttatgtgtgattaaaataacttaaatgactaatttgttacaaattttatatttaaaagacttatgtgt--gaccaataacttaaaaaattaatctattac 3895802  T
Q  464 aaacctcaaacttaaaggac 483  Q
    ||||||||||||||||||||    
T  3895803 aaacctcaaacttaaaggac 3895822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 2761546 - 2761494
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaa 391  Q
    ||||||||| |||||||| ||| | |||||||||||| |||||||||||||||    
T  2761546 ttgaaaacgtttacaaacttaaaggacttatgtgtgatcaaaataacttaaaa 2761494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 10356472 - 10356542
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||| |||||||||||   ||||||||||||   ||| ||||||||||||| ||||||||||||||||||    
T  10356472 ttaaaggacttatgtgtggcaaaaataacttaaaagaccaatctgttacaaatctcaaacttaaaggactt 10356542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 17342585 - 17342534
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaa 390  Q
    |||||||| ||||||||| ||| | |||||||||||||| ||||||||||||    
T  17342585 ttgaaaacacttacaaacttaaaggacttatgtgtgaccgaaataacttaaa 17342534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 481
Target Start/End: Original strand, 35050804 - 35050917
Alignment:
Q  370 gtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaac 467  Q
    |||| ||| ||||||||||||  |  |||||||||||||||||||| ||||| |||||||| || |   |||||||||  | ||  ||| | ||||||||    
T  35050804 gtgttacctaaataacttaaaggaccaatctgttacaaactttaaacttaaaggacttatgcgtgacctaaataacttaaaggatcaatttattacaaac 35050903  T
Q  468 ctcaaacttaaagg 481  Q
    ||||||||||||||    
T  35050904 ctcaaacttaaagg 35050917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 35050731 - 35050800
Alignment:
Q  352 caaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    ||||| ||| |||||||||||||| | ||||||||||||  |  |||||||||||||| ||||| |||||    
T  35050731 caaacttaaagaacttatgtgtgatcgaaataacttaaaggaccaatctgttacaaaccttaaacttaaa 35050800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 35050715 - 35050802
Alignment:
Q  396 aatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaagg 481  Q
    |||||||||||||  | ||| |||||  |||||||||| ||  ||||||||||   ||| |||||||||||||||| |||||||||||    
T  35050715 aatctgttacaaatctcaaacttaaagaacttatgtgtgatcgaaataacttaaaggaccaatctgttacaaaccttaaacttaaagg 35050802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 339 - 484
Target Start/End: Original strand, 25895108 - 25895255
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| ||||||||  || | ||||||||||||| |||||||||||||   | |||||||||||||| ||||| ||||| ||||| ||||| |  |    
T  25895108 ttgaaaacgtttacaaactgaaaggacttatgtgtgactaaaataacttaaaggttcaatctgttacaaaccttaaacttaaaggacttttgtgtgacca 25895207  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggact 484  Q
    |||||||||  | ||| |||||||||||||||||||||||||||||||    
T  25895208 aaataacttaaaggaccaatctgttacaaacctcaaacttaaaggact 25895255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 483
Target Start/End: Complemental strand, 31630208 - 31630066
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaa 440  Q
    ||||||| |||||||| |||   |||||||||||||||||||||||||||  || |||||||||||||| | ||| ||||| |||||| |||| |  |||    
T  31630208 gaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacttaaa-gacttaggtgtgaccaaa 31630110  T
Q  441 ataacttat-gacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||| ||||  |||||||| ||||||||||||||||||||||||    
T  31630109 ataatttataaacaaatctattacaaacctcaaacttaaaggac 31630066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 364 - 485
Target Start/End: Original strand, 36217161 - 36217281
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttatgacaaatctgttac 463  Q
    ||||||||||||||||||||| |||||  || |||||||||||||| | ||| ||||| ||||||||||| |  |||||||||||  |  ||| ||||||    
T  36217161 acttatgtgtgaccaaaataatttaaag-atcaatctgttacaaacctcaaacttaaaagacttatgtgtgaccaaaataacttaaaatcaatttgttac 36217259  T
Q  464 aaacctcaaacttaaaggactt 485  Q
    ||||||||||||||||||||||    
T  36217260 aaacctcaaacttaaaggactt 36217281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 480
Target Start/End: Complemental strand, 5009308 - 5009160
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaa----acattaatctgttacaaactttaaatttaaatgacttatgtgtc 434  Q
    ||||||||  ||||||||||||   |||||||||||| ||||||||||||||    | |||||||||||||||||   ||| |||||||||||||||||     
T  5009308 ttgaaaacatttacaaacataaaagacttatgtgtgatcaaaataacttaaatgacaaattaatctgttacaaaccacaaacttaaatgacttatgtgtg 5009209  T
Q  435 ataaaaataactt---atgacaaatctgttacaaacctcaaacttaaag 480  Q
    |  ||||||||||   | ||| ||||| |||||||||||||||||||||    
T  5009208 aacaaaataacttaaaaggaccaatctattacaaacctcaaacttaaag 5009160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 339 - 483
Target Start/End: Original strand, 5009366 - 5009510
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| ||| | | ||||||||||| |||||||||||||  || ||| |||||||||| | ||| |||||  |||||||||| | ||    
T  5009366 ttgaaaacgtttacaaacttaaagga-ttatgtgtgacaaaaataacttaaaggatcaatatgttacaaacctcaaacttaaagtacttatgtgtgacaa 5009464  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||| |||||  | ||| ||| ||||||||||||||||||||||||||    
T  5009465 aaa-aacttaaaagaccaatatgttacaaacctcaaacttaaaggac 5009510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 483
Target Start/End: Complemental strand, 44556645 - 44556524
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    |||||||||||| |||||||| |||||  || ||| | |||||||| | ||| ||||| ||||||||||| | ||||| |||||  ||||| ||||| ||    
T  44556645 acttatgtgtgatcaaaataagttaaaggatcaatttattacaaacctcaaacttaaaggacttatgtgtgacaaaaaaaacttaaatgaccaatctatt 44556546  T
Q  462 acaaacctcaaacttaaaggac 483  Q
    |||||||| |||||||||||||    
T  44556545 acaaaccttaaacttaaaggac 44556524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 483
Target Start/End: Complemental strand, 9501048 - 9500904
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaa 440  Q
    ||||||| |||||||| ||| | ||||||||||||| |||||||||||||  |   ||||||||||||| | ||| ||||  |||||| |||| |  |||    
T  9501048 gaaaacgtttacaaacttaaaggacttatgtgtgactaaaataacttaaagaagcgatctgttacaaacctcaaacttaagggacttaagtgtgaccaaa 9500949  T
Q  441 ataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||  | ||| ||||||||||| |||| |||||||||||||    
T  9500948 ataacttaaaggaccaatctgttacagacctaaaacttaaaggac 9500904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 349 - 480
Target Start/End: Original strand, 29379895 - 29380028
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||| | ||| ||||||||||||||||||||||| |||||  | |||| |||||||||| | ||| ||||| || |||||||     ||||||||||     
T  29379895 ttacaatcttaaagaacttatgtgtgaccaaaataatttaaaggactaatatgttacaaacgtcaaacttaaaggaattatgtgaggccaaaataactta 29379994  T
Q  448 -atgacaaatctgttacaaacctcaaacttaaag 480  Q
     ||||| ||| | |||||||||||||||||||||    
T  29379995 aatgaccaatttattacaaacctcaaacttaaag 29380028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 485
Target Start/End: Original strand, 31630268 - 31630414
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||| ||| || ||||||||||||||||||||||||||| |  ||||| |||| ||| | ||||||||| ||||| ||||| |  |    
T  31630268 ttgaaaacatttacaaacttaaaga-cttatgtgtgaccaaaataacttaaaa-accaatctattactaacctcaaatttaaaggacttttgtgtgacca 31630365  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    |||||||||  ||||  |||||  || ||||||||||||||||| ||||    
T  31630366 aaataacttaaatgatcaatcttctataaacctcaaacttaaagaactt 31630414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 479
Target Start/End: Original strand, 36217220 - 36217331
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttatgacaaatctgttac 463  Q
    ||||||||||||||||||||||||||||  | ||| |||||||||| | ||| ||||| ||||||| | | | ||||||||||  |||| ||| | ||||    
T  36217220 acttatgtgtgaccaaaataacttaaaa--tcaatttgttacaaacctcaaacttaaaggacttatatataacaaaaataact--tgaccaatttattac 36217315  T
Q  464 aaacctcaaacttaaa 479  Q
    ||| ||||||||||||    
T  36217316 aaaactcaaacttaaa 36217331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 431
Target Start/End: Original strand, 3876955 - 3877022
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgt 431  Q
    |||||||||||||||||||||||||||| || ||| | |||||||| | |||||||||  ||||||||    
T  3876955 acttatgtgtgaccaaaataacttaaaagatcaatttattacaaacctcaaatttaaagaacttatgt 3877022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 475
Target Start/End: Complemental strand, 4511508 - 4511396
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    |||||||||| ||||||||||| ||||  |  ||| |||||||||| | ||||||||||||||| ||||| |  || |||||||  ||||| ||||| ||    
T  4511508 acttatgtgtaaccaaaataacataaacgaccaat-tgttacaaacctcaaatttaaatgacttgtgtgtaaccaatataacttaaatgaccaatctatt 4511410  T
Q  462 acaaacctcaaact 475  Q
    ||||||||||||||    
T  4511409 acaaacctcaaact 4511396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 1316107 - 1316038
Alignment:
Q  352 caaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    ||||||||| | |||||||||||||||||||||||||||  ||  |||| |||||||| | |||||||||    
T  1316107 caaacataaaggacttatgtgtgaccaaaataacttaaacgatctatctattacaaacctcaaatttaaa 1316038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 11791791 - 11791842
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaa 390  Q
    ||||||||| |||||||| ||  | |||||||||||||||||||||||||||    
T  11791791 ttgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaa 11791842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 483
Target Start/End: Original strand, 33847626 - 33847771
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaacttt-aaatttaaatgacttatgtgtcata 437  Q
    ||||||| | ||| |||| ||| | |||||| || ||||||||||| |||||  |  |||||||||||  |||| ||||||||| ||||||||||| |      
T  33847626 ttgaaaatgtttaaaaacttaaaggacttatatgcgaccaaaataatttaaaggaccaatctgttaca--ctttcaaatttaaaggacttatgtgtgacc 33847723  T
Q  438 aaaataacttat--gacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||||   ||  ||| |||||||||| |||||||||||||||    
T  33847724 aaaataacttaaaggaacaatatgttacaaacatcaaacttaaaggac 33847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 36694432 - 36694390
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaa 408  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||    
T  36694432 acttatatgtgaccaaaataacttaaaac--taatctgttacaaa 36694390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 39442453 - 39442494
Alignment:
Q  369 tgtgtgaccaaaataacttaaaa-cattaatctgttacaaac 409  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  39442453 tgtgtgaccaaaataacttaaaaggattaatctgttacaaac 39442494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 479
Target Start/End: Original strand, 14166408 - 14166521
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttac 463  Q
    |||||||||| ||| ||||||||||| || ||| |||||| ||| | ||| ||||| ||||||||||| | |||||||||||  | |||  |||| ||||    
T  14166408 ttatgtgtgaacaagataacttaaaa-atcaatttgttacgaacctcaaagttaaa-gacttatgtgtgacaaaaataacttaaaggacctatctattac 14166505  T
Q  464 aaacctcaaacttaaa 479  Q
    |||| |||||||||||    
T  14166506 aaacatcaaacttaaa 14166521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 25895165 - 25895197
Alignment:
Q  454 aatctgttacaaacctcaaacttaaaggacttt 486  Q
    |||||||||||||||| ||||||||||||||||    
T  25895165 aatctgttacaaaccttaaacttaaaggacttt 25895197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 485
Target Start/End: Original strand, 36217155 - 36217223
Alignment:
Q  418 taaatgacttatgtgtcataaaaataactt-atgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    |||||||||||||||| |  ||||||| || | ||  |||||||||||||||||||||||||| |||||    
T  36217155 taaatgacttatgtgtgaccaaaataatttaaagatcaatctgttacaaacctcaaacttaaaagactt 36217223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 36680985 - 36680941
Alignment:
Q  244 cttgcatctctatagagaaattaatgatatgagcataataactag 288  Q
    ||||||||||||||||| |||||| || |||| ||||||||||||    
T  36680985 cttgcatctctatagaggaattaaagacatgaacataataactag 36680941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 36682483 - 36682447
Alignment:
Q  100 gcaaacaaaagtctcaagcacatactaaaaattaaaa 136  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  36682483 gcaaataaaagtctcaagcacatactaacaattaaaa 36682447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 36694516 - 36694576
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    |||||||| ||| | ||||||||||||||||||||| |||||  |  ||||||||||||||    
T  36694516 ttacaaacttaaaggacttatgtgtgaccaaaataatttaaaggaccaatctgttacaaac 36694576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 482
Target Start/End: Original strand, 16327291 - 16327434
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| ||| | |||||| ||||||||||||||||||||  || |||||||||||||| | ||| ||||| ||||||||||||   |    
T  16327291 ttgaaaacgtttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacttaaaggacttatgtgtc--ta 16327388  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaagga 482  Q
    |||||||||  ||||  ||||| |||||||||||||||||||||||    
T  16327389 aaataacttaaatgattaatctattacaaacctcaaacttaaagga 16327434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 28559380 - 28559234
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| ||| | |||||||||||||||||||||||||||  |  |||||||||||||| | ||| | || ||||||||| || | ||    
T  28559380 ttgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaactgaattgacttatgcgtaacaa 28559281  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||  | ||| |||||||||||||| |||||||||||||||    
T  28559280 aaataacttaaaggaccaatctgttacaaacgtcaaacttaaaggac 28559234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 364 - 483
Target Start/End: Complemental strand, 25456395 - 25456275
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt-atgacaaatctgtta 462  Q
    |||||| ||||||||||||||||||||  |  |||||||||||||| | ||| ||||| ||||||||||| || |||||||||| | ||| ||| |||||    
T  25456395 acttatttgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatgtgtgatcaaaataacttaaggaccaatatgtta 25456296  T
Q  463 caaacctcaaacttaaaggac 483  Q
    ||||||| |||||||||||||    
T  25456295 caaacctaaaacttaaaggac 25456275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 366 - 483
Target Start/End: Original strand, 35461655 - 35461774
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttac 463  Q
    |||| |||||| |||||||||||||  || |||||||||||||  | ||| ||||||||||||||||| |  ||||||||||  | ||| ||||| ||||    
T  35461655 ttatttgtgacaaaaataacttaaatgatcaatctgttacaaatctcaaaattaaatgacttatgtgtgaccaaaataacttaaaggaccaatctattac 35461754  T
Q  464 aaacctcaaacttaaaggac 483  Q
    ||||||||||||||||||||    
T  35461755 aaacctcaaacttaaaggac 35461774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 16327243 - 16327097
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| ||| | |||||||||| ||||||||||||||||  |  |||||||||||||| | ||| ||||| ||||||||||  |  |    
T  16327243 ttgaaaacgtttacaaacttaaaggacttatgtgttaccaaaataacttaaacgaccaatctgttacaaacctcaaacttaaaggacttatgtgcgacta 16327144  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||  | ||  ||||| ||||||||||| ||||||||||||    
T  16327143 aaataacttaaacgatcaatctattacaaacctctaacttaaaggac 16327097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 485
Target Start/End: Complemental strand, 32361289 - 32361165
Alignment:
Q  363 aacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgt 460  Q
    ||||||||| |||||||||||||||||   | |||| |||||||||||| ||| |||||| |||||||||| |  ||||||||||  ||||  ||||| |    
T  32361289 aacttatgtatgaccaaaataacttaagggactaatttgttacaaacttcaaacttaaataacttatgtgtgaccaaaataacttaaatgatcaatctat 32361190  T
Q  461 tacaaacctcaaacttaaaggactt 485  Q
    ||||||| ||||| |||||||||||    
T  32361189 tacaaacttcaaatttaaaggactt 32361165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 485
Target Start/End: Original strand, 17400737 - 17400887
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtg--accaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcat 436  Q
    ||||||||| |||||||  ||| | |||||||||||  ||||||| |||||| |  |  |||||||||||||  | ||| ||||| ||||||||||| ||    
T  17400737 ttgaaaacgtttacaaatttaaaggacttatgtgtgtgaccaaaacaacttacaggaccaatctgttacaaaactcaaacttaaaggacttatgtgtgat 17400836  T
Q  437 aaaaataactta--tgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
     |||||||||||  |||| ||| ||||||||| ||||||||||||||||||    
T  17400837 caaaataacttaaatgaccaatatgttacaaatctcaaacttaaaggactt 17400887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 1996287 - 1996141
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| ||  | |||||||||||||||||||||||||||  | |||||| ||||||||   ||| ||||| || |||| ||| |  |    
T  1996287 ttgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaaggactaatctattacaaaccccaaacttaaaggatttatatgtgacca 1996188  T
Q  439 aaataacttatgaca--aatctgttacaaacctcaaacttaaaggac 483  Q
    ||||||||||  | |  ||||||||||||| ||||||||||||||||    
T  1996187 aaataacttaaaatatcaatctgttacaaatctcaaacttaaaggac 1996141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 479
Target Start/End: Original strand, 4943115 - 4943235
Alignment:
Q  362 gaacttatgtgtgaccaaaataacttaaaa-cattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatct 458  Q
    ||||||||||||||||||||||||||||||  || ||||||||| ||| || ||| ||||| ||||||||||| || ||||||| ||  |  || ||| |    
T  4943115 gaacttatgtgtgaccaaaataacttaaaaggatcaatctgttataaatttcaaacttaaaggacttatgtgtgatcaaaataatttaaagtaccaatat 4943214  T
Q  459 gttacaaacctcaaacttaaa 479  Q
    |||||||| ||||||||||||    
T  4943215 gttacaaatctcaaacttaaa 4943235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 483
Target Start/End: Complemental strand, 35461571 - 35461435
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | |||||| ||||| |||||||| |||||  |  |||||||||||||||| ||| ||| | ||||||||||| |  ||||||||||     
T  35461571 ttacaaacttaaaggacttatttgtgatcaaaataatttaaaggaccaatctgttacaaacttcaaacttacaggacttatgtgtgaccaaaataactta 35461472  T
Q  448 -atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
     | ||| ||| | ||||||||||||||||||||||||    
T  35461471 aaggaccaatatattacaaacctcaaacttaaaggac 35461435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 14604268 - 14604340
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    |||||| | ||| |||||||||||||||||||||||||||||  |  ||||| ||||||||||||||||||||    
T  14604268 ttacaatcttaacgaacttatgtgtgaccaaaataacttaaaggaccaatctattacaaactttaaatttaaa 14604340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 480
Target Start/End: Original strand, 25456499 - 25456609
Alignment:
Q  371 tgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttat-gacaaatctgttacaaacct 469  Q
    ||||||||||||||||||||  |  ||||| |||||||| | ||| |||||  | |||||||| |  |||||||||||  ||| ||||||||||||||||    
T  25456499 tgtgaccaaaataacttaaaggaccaatctattacaaacctcaaacttaaagtatttatgtgtgactaaaataacttaaagaccaatctgttacaaacct 25456598  T
Q  470 caaacttaaag 480  Q
    |||||||||||    
T  25456599 caaacttaaag 25456609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 479
Target Start/End: Original strand, 35813516 - 35813632
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta--tgacaaatctgtt 461  Q
    |||||||| ||| ||||||||||||||| |  |||||||||||||| | | | ||||| ||||||||||| |  |||||||||||  | || ||||||||    
T  35813516 acttatgtatgagcaaaataacttaaaa-acaaatctgttacaaacctcacacttaaaggacttatgtgtaaccaaaataacttaaataactaatctgtt 35813614  T
Q  462 acaaacctcaaacttaaa 479  Q
    |||||||| |||||||||    
T  35813615 acaaaccttaaacttaaa 35813632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 479
Target Start/End: Complemental strand, 14604186 - 14604072
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaac-attaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttatgacaaatctgtta 462  Q
    |||||| ||||||||||||||| |||||  || |||||||||||||| | ||| ||||| ||||||||||| |  |||||||||  |||  ||||| |||    
T  14604186 acttatatgtgaccaaaataacataaaatgatcaatctgttacaaacctcaaacttaaaggacttatgtgtgaccaaaataact--tgatcaatctatta 14604089  T
Q  463 caaacctcaaacttaaa 479  Q
    ||||||||||| |||||    
T  14604088 caaacctcaaatttaaa 14604072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 23661939 - 23661882
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    |||||||||| ||||||||||||||||| || |||||||||||||| | |||||||||    
T  23661939 acttatgtgtaaccaaaataacttaaaagatcaatctgttacaaacgtcaaatttaaa 23661882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 23796631 - 23796688
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    |||||||||| ||||||||||||||||| || |||||||||||||| | |||||||||    
T  23796631 acttatgtgtaaccaaaataacttaaaagatcaatctgttacaaacgtcaaatttaaa 23796688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 448
Target Start/End: Original strand, 12774341 - 12774452
Alignment:
Q  339 ttgaaaacgcttacaaacataa--ggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcat 436  Q
    ||||||||| |||||||| |||  |||  ||||| |||||||||||||||||||| || ||| ||||| |||  | ||| ||||| ||||||||||| |     
T  12774341 ttgaaaacgtttacaaacttaaaaggactttatgcgtgaccaaaataacttaaaagatcaatatgttagaaatctcaaacttaaaggacttatgtgtgac 12774440  T
Q  437 aaaaataactta 448  Q
    ||||||||||||    
T  12774441 aaaaataactta 12774452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 480
Target Start/End: Complemental strand, 23661997 - 23661881
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttatgaca--aatctgtt 461  Q
    ||||||||||||||||||||||||||||  | ||||||| |||||  | ||| ||||| ||||||||||| |  |||||||||||  | |  ||||||||    
T  23661997 acttatgtgtgaccaaaataacttaaaa--tcaatctgtcacaaatatcaaacttaaaggacttatgtgtaaccaaaataacttaaaagatcaatctgtt 23661900  T
Q  462 acaaacctcaaacttaaag 480  Q
    |||||| ||||| ||||||    
T  23661899 acaaacgtcaaatttaaag 23661881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 480
Target Start/End: Original strand, 23796573 - 23796689
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttatgaca--aatctgtt 461  Q
    ||||||||||||||||||||||||||||  | ||||||| |||||  | ||| ||||| ||||||||||| |  |||||||||||  | |  ||||||||    
T  23796573 acttatgtgtgaccaaaataacttaaaa--tcaatctgtcacaaatatcaaacttaaaggacttatgtgtaaccaaaataacttaaaagatcaatctgtt 23796670  T
Q  462 acaaacctcaaacttaaag 480  Q
    |||||| ||||| ||||||    
T  23796671 acaaacgtcaaatttaaag 23796689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 35813575 - 35813635
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatga 424  Q
    |||||||||| ||||||||||||||||  | ||||||||||||||| ||||| ||||||||    
T  35813575 acttatgtgtaaccaaaataacttaaataactaatctgttacaaaccttaaacttaaatga 35813635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 7209933 - 7209882
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaa 390  Q
    ||||||||| |||||||| ||| | |||||||||||||||||||||||||||    
T  7209933 ttgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 7209882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 16327225 - 16327155
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||| ||||||||||| |  |||||||||||   ||| ||||||||||||||||||||||||||||||||    
T  16327225 ttaaaggacttatgtgttaccaaaataacttaaacgaccaatctgttacaaacctcaaacttaaaggactt 16327155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 479
Target Start/End: Complemental strand, 20927958 - 20927848
Alignment:
Q  371 tgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaacc 468  Q
    ||||||||||||||||||||  |  ||| | |||||||| | ||||||||| ||||||||||| |  ||||||||||  ||||  ||||| ||||||| |    
T  20927958 tgtgaccaaaataacttaaatgaccaatttattacaaacctcaaatttaaaggacttatgtgtaactaaaataacttaaatgatcaatctattacaaatc 20927859  T
Q  469 tcaaacttaaa 479  Q
    |||||||||||    
T  20927858 tcaaacttaaa 20927848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 497
Target Start/End: Original strand, 1649407 - 1649540
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttatgacaaatctgttac 463  Q
    |||||||| ||||||||||| ||||||| |  ||| ||||| |||| | ||  || |||||||| ||||| || |||||||||||  |  ||| ||||||    
T  1649407 acttatgtctgaccaaaatagcttaaaa-accaatatgttataaacctcaagctttaatgacttgtgtgtgatcaaaataacttaaaatcaatatgttac 1649505  T
Q  464 aaacctcaaacttaaagga-ctttagtataatcta 497  Q
    |||||| |||||||||||| ||||||| |||||||    
T  1649506 aaaccttaaacttaaaggatctttagtgtaatcta 1649540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 448
Target Start/End: Complemental strand, 5746237 - 5746131
Alignment:
Q  342 aaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaa 441  Q
    |||||| |||||||| ||| | |||||||| | ||||||||||||||||  |  ||||||||| |||| | |||||||||  |||||||||| |  ||||    
T  5746237 aaaacgtttacaaacttaaaggacttatgttttaccaaaataacttaaatgaccaatctgttataaacctcaaatttaaagaacttatgtgtgaccaaaa 5746138  T
Q  442 taactta 448  Q
    |||||||    
T  5746137 taactta 5746131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 448
Target Start/End: Original strand, 12713106 - 12713188
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta 448  Q
    ||||| |||||||||||||||||||| || ||| ||||| |||  | ||| ||||| ||||||||||| | ||||||||||||    
T  12713106 ttatgcgtgaccaaaataacttaaaagatcaatatgttagaaatctcaaacttaaaggacttatgtgtgacaaaaataactta 12713188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 35813509 - 35813578
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttatga-caaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||||||| | |  |||||||||||  | |||||||||||||||||||| |||||||||||||    
T  35813509 ttaaatgacttatgtatgagcaaaataacttaaaaacaaatctgttacaaacctcacacttaaaggactt 35813578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 40980793 - 40980710
Alignment:
Q  402 ttacaaactttaaatttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||||| || ||| |||||  |||||||||| || |||||||||||  |||  ||||| ||||||||||||||||||||||||    
T  40980793 ttacaaatttcaaacttaaagtacttatgtgtgatcaaaataacttaaatgatcaatctattacaaacctcaaacttaaaggac 40980710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 5746302 - 5746369
Alignment:
Q  342 aaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    |||||| |||||||| |||   |||||||| |||||||||||| |||||| |||||| ||||||||||    
T  5746302 aaaacgtttacaaacttaaatgacttatgtatgaccaaaataatttaaaagattaatttgttacaaac 5746369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 485
Target Start/End: Complemental strand, 14604153 - 14604122
Alignment:
Q  454 aatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||||||||||||||||||||||||    
T  14604153 aatctgttacaaacctcaaacttaaaggactt 14604122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 405
Target Start/End: Original strand, 14604349 - 14604384
Alignment:
Q  370 gtgtgaccaaaataacttaaaacattaatctgttac 405  Q
    |||||||||||||||||||||| |||||||||||||    
T  14604349 gtgtgaccaaaataacttaaaagattaatctgttac 14604384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 485
Target Start/End: Original strand, 16327348 - 16327379
Alignment:
Q  454 aatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||||||||||||||||||||||||    
T  16327348 aatctgttacaaacctcaaacttaaaggactt 16327379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 480
Target Start/End: Complemental strand, 19550219 - 19550101
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    |||||||||| ||||||||||||||||  || ||  ||||| |||  | ||| ||||| |||||||||||||  ||||||||||  |  |  ||||| ||    
T  19550219 acttatgtgtaaccaaaataacttaaatgatcaaaatgttaaaaatctcaaacttaaaagacttatgtgtcaccaaaataacttaaagaatcaatctatt 19550120  T
Q  462 acaaacctcaaacttaaag 480  Q
    |||||||||||||||||||    
T  19550119 acaaacctcaaacttaaag 19550101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 485
Target Start/End: Complemental strand, 25456363 - 25456332
Alignment:
Q  454 aatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||||||||||||||||||||||||    
T  25456363 aatctgttacaaacctcaaacttaaaggactt 25456332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 426
Target Start/End: Original strand, 35812193 - 35812255
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgact 426  Q
    ||||||| ||||||||||||| |||||  |  ||||| |||||||||||||||||||| ||||    
T  35812193 acttatgcgtgaccaaaataatttaaaggaccaatctattacaaactttaaatttaaaggact 35812255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 483
Target Start/End: Original strand, 19550376 - 19550405
Alignment:
Q  454 aatctgttacaaacctcaaacttaaaggac 483  Q
    ||||||||||||||||||||||||||||||    
T  19550376 aatctgttacaaacctcaaacttaaaggac 19550405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 390
Target Start/End: Original strand, 4943237 - 4943265
Alignment:
Q  362 gaacttatgtgtgaccaaaataacttaaa 390  Q
    |||||||||||||||||||||||||||||    
T  4943237 gaacttatgtgtgaccaaaataacttaaa 4943265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 390
Target Start/End: Complemental strand, 5746157 - 5746129
Alignment:
Q  362 gaacttatgtgtgaccaaaataacttaaa 390  Q
    |||||||||||||||||||||||||||||    
T  5746157 gaacttatgtgtgaccaaaataacttaaa 5746129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 18904147 - 18904199
Alignment:
Q  160 gaccataacatagattaatagtcatatgttttttaatatacaagatcctcatt 212  Q
    ||||| ||||| |||||||||||| |||||| || | ||||||||||||||||    
T  18904147 gaccacaacatggattaatagtcaaatgtttattgacatacaagatcctcatt 18904199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 485
Target Start/End: Original strand, 28559441 - 28559516
Alignment:
Q  412 taaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    |||| ||||| ||||||||||| |  ||||||| |||   ||| ||||||||| ||||||||||||||||||||||    
T  28559441 taaacttaaaggacttatgtgtgactaaaataatttaaaggaccaatctgttataaacctcaaacttaaaggactt 28559516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 392
Target Start/End: Original strand, 37032975 - 37033003
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaac 392  Q
    |||||||||||||||||||||||||||||    
T  37032975 acttatgtgtgaccaaaataacttaaaac 37033003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 433
Target Start/End: Complemental strand, 37642937 - 37642845
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgt 433  Q
    ||||||| |||||||| ||| | | |||| || |||||||||||||||||  |  ||  |||||||||||| ||| ||||| |||||||||||    
T  37642937 gaaaacgtttacaaacttaaaggatttatttgagaccaaaataacttaaatgagcaacatgttacaaacttaaaacttaaacgacttatgtgt 37642845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 341 - 480
Target Start/End: Complemental strand, 252189 - 252048
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaa 440  Q
    ||||||| |||||||| ||| | |||||| ||||||||||||||||||||| | | ||||||||||||| ||||| ||||| |||||| |||| |  |||    
T  252189 gaaaacgtttacaaacttaaaggacttatttgtgaccaaaataacttaaaagactgatctgttacaaaccttaaacttaaaggacttacgtgtgaccaaa 252090  T
Q  441 ataactt--atgacaaatctgttacaaacctcaaacttaaag 480  Q
    |||||||  ||||| ||||| ||| |||||||||||||||||    
T  252089 ataacttaaatgaccaatctattataaacctcaaacttaaag 252048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 433
Target Start/End: Original strand, 32186665 - 32186759
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgt 433  Q
    ||||||||| |||||||| ||| ||| |||||||| |||||||||||||||||||| ||| |||||||||| | ||| ||||| |||||||||||    
T  32186665 ttgaaaacgtttacaaacttaaagaatttatgtgtaaccaaaataacttaaaacatcaatatgttacaaacctcaaacttaaaggacttatgtgt 32186759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 339 - 485
Target Start/End: Original strand, 25848490 - 25848638
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||| ||| | || ||||||||||||||||||||||||  |  ||| |||||||||| | ||||||||| ||||||||||| || |    
T  25848490 ttgaaaacatttacaaacttaaaggacatatgtgtgaccaaaataacttaaaggaccaatgtgttacaaacctaaaatttaaaggacttatgtgtgatta 25848589  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    |||||||||  | ||  ||| | ||||||||||||||||| ||||||||    
T  25848590 aaataacttaaaagatcaatttattacaaacctcaaactttaaggactt 25848638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 483
Target Start/End: Original strand, 18020039 - 18020160
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta--tgacaaatctgtt 461  Q
    |||||||||| ||||||||||||||||  |  ||||||||| |||| ||||| ||||| ||||||||| | |  |||||||||||  | |  ||||| ||    
T  18020039 acttatgtgtaaccaaaataacttaaacgaccaatctgttataaaccttaaacttaaaggacttatgtttgaccaaaataacttaaataatcaatctatt 18020138  T
Q  462 acaaacctcaaacttaaaggac 483  Q
    ||||||||||||||||||||||    
T  18020139 acaaacctcaaacttaaaggac 18020160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 483
Target Start/End: Complemental strand, 47573803 - 47573694
Alignment:
Q  376 ccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaacctcaaa 473  Q
    ||||||||| |||||  || ||| |||||||||| | ||| ||||| ||||||||||| |||||||||| ||  | ||| ||| ||||||||||||||||    
T  47573803 ccaaaataatttaaaggatcaatatgttacaaacctcaaacttaaaagacttatgtgtgataaaaataatttaaaggactaatatgttacaaacctcaaa 47573704  T
Q  474 cttaaaggac 483  Q
    ||||||||||    
T  47573703 cttaaaggac 47573694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 483
Target Start/End: Original strand, 26724227 - 26724348
Alignment:
Q  362 gaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctg 459  Q
    |||||| ||| ||||||||||||||||||||  |||||||||| | || | ||||||||| ||||||||||| |  ||||||||||  |  |  |||||     
T  26724227 gaacttgtgtatgaccaaaataacttaaaac--taatctgttagagacctcaaatttaaaggacttatgtgtgacgaaaataacttaaagaatcaatcta 26724324  T
Q  460 ttacaaacctcaaacttaaaggac 483  Q
    ||||||||||||||||||||||||    
T  26724325 ttacaaacctcaaacttaaaggac 26724348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 448
Target Start/End: Complemental strand, 40209819 - 40209712
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| ||| || ||||||||||| ||||| ||||||||| || ||||| ||| |||| | |||||||||| |||||||||| || |    
T  40209819 ttgaaaacgtttacaaacttaaaga-cttatgtgtgaacaaaacaacttaaaagatcaatctattagaaacctcaaatttaaat-acttatgtgtgatca 40209722  T
Q  439 aaataactta 448  Q
    ||||||||||    
T  40209721 aaataactta 40209712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 479
Target Start/End: Complemental strand, 46337637 - 46337505
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | | |||| ||||||||||||||||||||  |||||| |||||||||||| ||| ||||| ||||||||||| |  ||||||| ||     
T  46337637 ttacaaacttaaaggatttatctgtgaccaaaataacttaaagaattaatatgttacaaacttcaaacttaaaggacttatgtgtgaccaaaataattta 46337538  T
Q  448 -atgacaaatctgttacaaacctcaaacttaaa 479  Q
     |  |  ||| ||||||||||||||||||||||    
T  46337537 aagaatcaatatgttacaaacctcaaacttaaa 46337505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 483
Target Start/End: Original strand, 40286441 - 40286585
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||| | |||||||| ||| |||||||||||  || ||||||||| |||| |  |||||||||||||| | ||| ||||| ||||||||||  ||||    
T  40286441 ttgaaaatgtttacaaacttaaagaacttatgtg--actaaaataactcaaaagaccaatctgttacaaacctcaaacttaaaggacttatgtgcgataa 40286538  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||  | ||  || | ||||||||||||||| |||||||||    
T  40286539 aaataacttaaaggatcaaacggttacaaacctcaaatttaaaggac 40286585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 485
Target Start/End: Complemental strand, 40286373 - 40286235
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | |||| ||||||||||||||||||||||  |  ||| ||||| |||| | ||| ||||| ||||||||||| || ||||||||||     
T  40286373 ttacaaacttaaaggacttctgtgtgaccaaaataacttaaaggaacaatatgttataaacctcaaacttaaaggacttatgtgtgatcaaaataacttg 40286274  T
Q  448 -atgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
     | ||| ||| |||||||||| |||||||| || |||||    
T  40286273 aaggactaatttgttacaaacatcaaactttaaagactt 40286235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 47069673 - 47069527
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||| |||  || | ||||||||||||||||||||||| |||  |  ||| |||||||||  | ||| |||||  |||||||||| || |    
T  47069673 ttgaaaacgtttacgaactcaaaggacttatgtgtgaccaaaataactaaaagaaccaatttgttacaaaactcaaacttaaagaacttatgtgtgatca 47069574  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||  | ||| ||| |||||||||||||||| |||||||||    
T  47069573 aaataacttaaaggaccaatatgttacaaacctcaaatttaaaggac 47069527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 483
Target Start/End: Original strand, 47891312 - 47891458
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| |||   |||||||||||||||||||||||||||  |  ||| |||| ||||| | ||| | ||| ||||||||||| || |    
T  47891312 ttgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaaggaccaatatgttgcaaacctcaaactcaaaggacttatgtgtgatca 47891411  T
Q  439 aaataacttat--gacaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||||||||   ||  ||| |||||||||  |||||||||||||||    
T  47891412 aaataacttaaaggatcaatttgttacaaatttcaaacttaaaggac 47891458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 12366352 - 12366282
Alignment:
Q  216 ctcatttctaaggtgagtggagcgcatacttgcatctctatagagaaattaatgatatgagcataataact 286  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||  | | ||||||||| ||||||||||    
T  12366352 ctcatttctaaggcgagtgtagagcatacttgcatctctatagagggacttatgatatgaacataataact 12366282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 480
Target Start/End: Complemental strand, 27768448 - 27768308
Alignment:
Q  342 aaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaa 441  Q
    |||||| |||||||| ||| | | |||||||||| ||||||||| ||||  |||||||| |||||||| | | | ||||| || |||||||| || ||||    
T  27768448 aaaacgtttacaaacttaaaggatttatgtgtgatcaaaataacataaatgattaatcttttacaaacatcatacttaaaagatttatgtgtaatcaaaa 27768349  T
Q  442 taactt--atgacaaatctgttacaaacctcaaacttaaag 480  Q
    ||||||  ||||  || || |||||||| ||||||||||||    
T  27768348 taacttaaatgatcaacctattacaaacttcaaacttaaag 27768308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 428
Target Start/End: Original strand, 36667297 - 36667361
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgactta 428  Q
    |||||||||||||||||||||||||||  |  |||||||||||||| ||||| ||||| ||||||    
T  36667297 acttatgtgtgaccaaaataacttaaaggacaaatctgttacaaaccttaaacttaaaggactta 36667361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 12346195 - 12346124
Alignment:
Q  143 catctcgtaatagagaggaccataacatagattaatagtcatatgttttttaatatacaagatcctcatttc 214  Q
    |||||| ||||||||||||||||| ||| ||| | |||||| ||||||| | ||| ||||||||||||||||    
T  12346195 catctcataatagagaggaccatagcatggatcactagtcagatgttttctgatacacaagatcctcatttc 12346124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 14964974 - 14964903
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaact 410  Q
    ||||||||  |||||||| ||| | |||||||||||||||||||||||||||  |  |||||||||||||||    
T  14964974 ttgaaaacctttacaaacttaaaggacttatgtgtgaccaaaataacttaaatgaccaatctgttacaaact 14964903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 36667290 - 36667360
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||| ||||||||||| |  |||||||||||   |||||||||||||||||||| |||||||||||||||    
T  36667290 ttaaaagacttatgtgtgaccaaaataacttaaaggacaaatctgttacaaaccttaaacttaaaggactt 36667360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 433
Target Start/End: Original strand, 47573888 - 47573981
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgt 433  Q
    ||||||||| |||| ||| ||| || ||||| ||||||||||||||||||||  || ||||| |||||||| | ||| ||||| |||||||||||    
T  47573888 ttgaaaacgtttacgaacttaaaga-cttatatgtgaccaaaataacttaaaggatcaatctattacaaacctcaaacttaaaagacttatgtgt 47573981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 7607703 - 7607767
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttat 429  Q
    ||||||| |||||||||||||||||||| || ||| |||||||||| | ||| |||||||||||||    
T  7607703 acttatgcgtgaccaaaataacttaaaa-atcaatatgttacaaacatcaaacttaaatgacttat 7607767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 444
Target Start/End: Original strand, 14624239 - 14624342
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||| |||   ||||||||||||||| ||||||||||||   |||||| |||||||| ||||| ||||| ||||||||| | || |    
T  14624239 ttgaaaacgtttacaaacttaaaagacttatgtgtgaccagaataacttaaaa-tctaatctattacaaacattaaacttaaa-gacttatgtatgatca 14624336  T
Q  439 aaataa 444  Q
    ||||||    
T  14624337 aaataa 14624342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 28814063 - 28814132
Alignment:
Q  352 caaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    ||||| ||| |||||||||| ||| ||||||||||||||| | |||||| |||||||| | |||||||||    
T  28814063 caaacttaaagaacttatgtctgatcaaaataacttaaaagactaatctattacaaacctcaaatttaaa 28814132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 30955011 - 30955067
Alignment:
Q  352 caaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    ||||||||| | |||||||||||||||||||||||| ||||| |||||| ||||||||    
T  30955011 caaacataaaggacttatgtgtgaccaaaataactt-aaacactaatctattacaaac 30955067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 30970823 - 30970879
Alignment:
Q  352 caaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    ||||||||| | |||||||||||||||||||||||| ||||| |||||| ||||||||    
T  30970823 caaacataaaggacttatgtgtgaccaaaataactt-aaacactaatctattacaaac 30970879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 45131506 - 45131438
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||| ||||||| ||| | ||||||||||||  |||  ||||||||||||||||||||||||||||||    
T  45131506 ttaaaagacttatatgttacaaaaataacttaaatgatcaatctgttacaaacctcaaacttaaaggac 45131438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 480
Target Start/End: Original strand, 13902996 - 13903139
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| |||||||  ||| | |||||| ||| ||||||||||||||||| | |||| |||||||||| | | | ||||| || |||||||  |  |    
T  13902996 ttgaaaacgtttacaaatttaaaggacttatatgtaaccaaaataacttaaaagactaatatgttacaaacctcagacttaaaggatttatgtgcaacca 13903095  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaag 480  Q
    |||||||||  | ||  ||| |||||||||||||||| ||||||    
T  13903096 aaataacttaaaggattaatatgttacaaacctcaaatttaaag 13903139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 483
Target Start/End: Original strand, 25848575 - 25848697
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttat---gacaaatctgt 460  Q
    ||||||||||||  |||||||||||||| || ||| | |||||||| | ||| || || ||||||||||| |  |||||||||||    ||| ||| | |    
T  25848575 acttatgtgtgattaaaataacttaaaagatcaatttattacaaacctcaaactttaaggacttatgtgttaccaaaataacttaaaaggaccaatttat 25848674  T
Q  461 tacaaacctcaaacttaaaggac 483  Q
    || ||||||||||||||||||||    
T  25848675 tataaacctcaaacttaaaggac 25848697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 483
Target Start/End: Original strand, 28814021 - 28814136
Alignment:
Q  370 gtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaac 467  Q
    ||||||||||| |||||||||  |  ||||| |||||||| | ||| |||||  |||||||| | || ||||||||||  | ||| ||||| ||||||||    
T  28814021 gtgtgaccaaattaacttaaatgaccaatctattacaaacctcaaacttaaagaacttatgtctgatcaaaataacttaaaagactaatctattacaaac 28814120  T
Q  468 ctcaaacttaaaggac 483  Q
    |||||| |||||||||    
T  28814121 ctcaaatttaaaggac 28814136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 480
Target Start/End: Original strand, 36900066 - 36900209
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||| | |||||||| ||| | | ||||||| ||  |||||||||||||  || ||||| |||||||| ||||| ||||| ||| ||||||| |  |    
T  36900066 ttgaaaatgtttacaaacttaaaggatttatgtgagattaaaataacttaaacgatcaatctcttacaaaccttaaacttaaaggacctatgtgtaacca 36900165  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaag 480  Q
    |||||||||  | ||| ||||| ||| ||| |||||||||||||    
T  36900166 aaataacttaaaggaccaatctattataaatctcaaacttaaag 36900209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 14964956 - 14964887
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||| ||||||||||| |  |||||||||||  |||| |||||||||||||| |||||||||||||||||    
T  14964956 ttaaaggacttatgtgtgaccaaaataacttaaatgaccaatctgttacaaac-tcaaacttaaaggactt 14964887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 28813982 - 28813931
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaa 390  Q
    ||||||||| |||||||| | | | |||||||||||||||||||||||||||    
T  28813982 ttgaaaacgtttacaaacttgaaggacttatgtgtgaccaaaataacttaaa 28813931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 485
Target Start/End: Original strand, 40286496 - 40286527
Alignment:
Q  454 aatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||||||||||||||||||||||||    
T  40286496 aatctgttacaaacctcaaacttaaaggactt 40286527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 483
Target Start/End: Original strand, 47069772 - 47069807
Alignment:
Q  448 atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||| ||||||||||||||||||||||||||||||    
T  47069772 atgaccaatctgttacaaacctcaaacttaaaggac 47069807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 425
Target Start/End: Complemental strand, 46337562 - 46337501
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgac 425  Q
    ||||||||||||||||||||| |||||  || ||| |||||||||| | ||| |||||||||    
T  46337562 acttatgtgtgaccaaaataatttaaagaatcaatatgttacaaacctcaaacttaaatgac 46337501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 47891169 - 47891124
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    ||||| ||||||||||||||| |||||| || ||||||||||||||    
T  47891169 acttaggtgtgaccaaaataatttaaaagatcaatctgttacaaac 47891124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 483
Target Start/End: Complemental strand, 26976403 - 26976375
Alignment:
Q  455 atctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||||||||||||||||||||||    
T  26976403 atctgttacaaacctcaaacttaaaggac 26976375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 42866021 - 42865981
Alignment:
Q  368 atgtgtgaccaaaataacttaaaacattaatctgttacaaa 408  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  42866021 atgtgtgaccaaaataacataaatgattaatctgttacaaa 42865981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 482
Target Start/End: Complemental strand, 43650111 - 43650044
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaagga 482  Q
    ||||| || |||||||| || |||||||||||  |||| ||||| |||||| ||||||||||||||||    
T  43650111 ttaaaagatttatgtgtgatcaaaataacttaaatgaccaatctcttacaatcctcaaacttaaagga 43650044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 41151550 - 41151404
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||||||| | |||||||||||||||||||||||||||  |  |||||||||| ||  | ||| ||||| ||||||||||| || |    
T  41151550 ttgaaaacatttacaaacataaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttactaaactcaaacttaaaggacttatgtgtgatca 41151451  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||  | ||| ||| ||||||||| ||||||||||||||||    
T  41151450 aaataacttaaaggaccaatatgttacaaaactcaaacttaaaggac 41151404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 27128019 - 27127877
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||| ||| | |||||||||||||||||||||||||||  || |||||||||||||| | ||| |||||  |||||||||| || |    
T  27128019 ttgaaaacatttacaaacttaaaggacttatgtgtgaccaaaataacttaaagaatcaatctgttacaaac-tcaaacttaaa--acttatgtgtgatca 27127923  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||||  || || ||||||||||||| ||||||||||||||||    
T  27127922 aaataacttaaataaccaatctgttacaaa-ctcaaacttaaaggac 27127877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 480
Target Start/End: Original strand, 36053039 - 36053181
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||| ||| ||||||||||||||| |||||||||||||  || ||| | |||||||| | ||||||||||||||||| ||| |  |    
T  36053039 ttgaaaacttttacaaacttaaagaacttatgtgtgactaaaataacttaaaggatcaatattttacaaacctcaaatttaaatgacttatatgtgacta 36053138  T
Q  439 aaataactt-atgacaaatctgttacaaacctcaaacttaaag 480  Q
    ||||||||| |  |||||| | |||||||| ||||||||||||    
T  36053139 aaataacttaaaaacaaatttattacaaacgtcaaacttaaag 36053181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 364 - 488
Target Start/End: Complemental strand, 27052528 - 27052402
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta--tgacaaatctgtt 461  Q
    |||||||||||||| ||||||||||||  |  ||| |||||||||| ||||| ||||||||||||| ||| |  |||||||||||   ||| ||||| ||    
T  27052528 acttatgtgtgaccgaaataacttaaaggaccaatgtgttacaaaccttaaacttaaatgacttatatgtgactaaaataacttaagggaccaatctatt 27052429  T
Q  462 acaaacctcaaacttaaaggactttag 488  Q
    |||||| ||||||||||||||| ||||    
T  27052428 acaaacatcaaacttaaaggaccttag 27052402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 483
Target Start/End: Complemental strand, 24827477 - 24827356
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta--tgacaaatctgtt 461  Q
    ||||||||||||| |||||||||||||  |  ||||| |||||||| | ||| ||||| ||||||  ||| || || ||||||||  |||| ||||||||    
T  24827477 acttatgtgtgactaaaataacttaaatgacaaatctattacaaacatcaaacttaaaggacttagttgtgatcaatataacttaaatgaccaatctgtt 24827378  T
Q  462 acaaacctcaaacttaaaggac 483  Q
    ||||||||||||||||||||||    
T  24827377 acaaacctcaaacttaaaggac 24827356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 483
Target Start/End: Original strand, 27128091 - 27128213
Alignment:
Q  363 aacttatgtgtgaccaaaataactt-aaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataa-cttatgacaaatctgt 460  Q
    ||||||||||||||||||||||||| |||| || ||| ||||| |||| ||||| ||||| ||||| ||||| || ||||||| || |  || ||||| |    
T  27128091 aacttatgtgtgaccaaaataacttaaaaagatcaatttgttagaaaccttaaacttaaaggacttgtgtgtgatcaaaataacctaaaaaccaatctat 27128190  T
Q  461 tacaaacctcaaacttaaaggac 483  Q
    |||||||||||||||||||||||    
T  27128191 tacaaacctcaaacttaaaggac 27128213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 20209462 - 20209598
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | |||||| ||||||||||||||||||||  || |||||||||||||| | |||  |||| ||||||||||| |  ||||||| ||     
T  20209462 ttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaaagacttatgtgtgaccaaaataattta 20209561  T
Q  448 -atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
     | ||| ||| |||||||||||||||| |||||||||    
T  20209562 aaggactaatatgttacaaacctcaaatttaaaggac 20209598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 20229170 - 20229306
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | |||||| ||||||||||||||||||||  || |||||||||||||| | |||  |||| ||||||||||| |  ||||||| ||     
T  20229170 ttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaaagacttatgtgtgaccaaaataattta 20229269  T
Q  448 -atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
     | ||| ||| |||||||||||||||| |||||||||    
T  20229270 aaggactaatatgttacaaacctcaaatttaaaggac 20229306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 24909606 - 24909742
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | ||||||| ||||||||||||| |||||  |  |||||| ||||||| | ||| ||||| ||||||||||| || ||||||||||     
T  24909606 ttacaaacttaaaggacttatgcgtgaccaaaataatttaaaggaccaatctgctacaaacctcaaacttaaaggacttatgtgtgatcaaaataactta 24909705  T
Q  448 -atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
     | ||| ||| ||||||||| ||||||||||||||||    
T  24909706 aaggaccaatttgttacaaatctcaaacttaaaggac 24909742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 339 - 483
Target Start/End: Original strand, 6220376 - 6220521
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| ||| |||| ||| | ||||||||||||||| |||||||||||  |  |||||||||||||  | ||| |||||  |||||||||| | ||    
T  6220376 ttgaaaacgttta-aaacttaaaggacttatgtgtgaccacaataacttaaagtaccaatctgttacaaatctcaaacttaaagaacttatgtgtgacaa 6220474  T
Q  439 aaataacttatg--acaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||||||||    || ||| ||||||||||||||||||||||||||    
T  6220475 aaataacttaaagaaccaatttgttacaaacctcaaacttaaaggac 6220521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 15563904 - 15563848
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||    
T  15563904 acttatgtgtgactaaaataacttaaaa-attaatctgttacaaaccttaaatttaaa 15563848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 485
Target Start/End: Complemental strand, 24827488 - 24827414
Alignment:
Q  413 aaatttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||| ||||||||||| |  |||||||||||  |||||||||| |||||||| |||||||||||||||||    
T  24827488 aaatttaaaagacttatgtgtgactaaaataacttaaatgacaaatctattacaaacatcaaacttaaaggactt 24827414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 483
Target Start/End: Complemental strand, 6220303 - 6220182
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    ||||||||||||| ||||| |||||||  |  |||| ||||||||| | ||| ||||| ||||||| ||| | |||||||||||  | ||| ||| ||||    
T  6220303 acttatgtgtgacaaaaattacttaaatgaccaatcagttacaaacctcaaacttaaaggacttatctgttacaaaaataacttaaaggaccaatttgtt 6220204  T
Q  462 acaaacctcaaacttaaaggac 483  Q
     |||||||||||||||||||||    
T  6220203 tcaaacctcaaacttaaaggac 6220182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 349 - 479
Target Start/End: Original strand, 41151608 - 41151741
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaa-ctttaaatttaaatgacttatgtgtcataaaaataactt 447  Q
    |||||||| ||| | |||||||||||||||||| ||||||||  |  ||||||||||||| |   || || ||| ||||||||||| |  ||||||||||    
T  41151608 ttacaaacttaaaggacttatgtgtgaccaaaagaacttaaaggaccaatctgttacaaaccacgaacttaaaaggacttatgtgtgaccaaaataactt 41151707  T
Q  448 --atgacaaatctgttacaaacctcaaacttaaa 479  Q
      | ||| ||||||||||||||||||||||||||    
T  41151708 aaaggactaatctgttacaaacctcaaacttaaa 41151741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 483
Target Start/End: Complemental strand, 9399935 - 9399815
Alignment:
Q  365 cttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtta 462  Q
    ||||||||||||||||||||||||||   | | ||| |||||||| ||||| ||||| |||||| |||| |  ||| ||||||  |  || ||| |||||    
T  9399935 cttatgtgtgaccaaaataacttaaagagtcactctattacaaaccttaaacttaaaggacttacgtgtgaccaaagtaacttaaagaaccaatatgtta 9399836  T
Q  463 caaacctcaaacttaaaggac 483  Q
    |||||||||||||||||||||    
T  9399835 caaacctcaaacttaaaggac 9399815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 479
Target Start/End: Original strand, 24083256 - 24083365
Alignment:
Q  371 tgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaacc 468  Q
    ||||| ||||||||||||||| || |||||||||||||| | ||| ||||| | ||||||||| || ||||||||||  || || ||||| |||||| |     
T  24083256 tgtgatcaaaataacttaaaa-atcaatctgttacaaacctcaaacttaaaagccttatgtgtgatcaaaataacttaaataaccaatctattacaacct 24083354  T
Q  469 tcaaacttaaa 479  Q
    |||||||||||    
T  24083355 tcaaacttaaa 24083365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 41151684 - 41151742
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaat 422  Q
    |||||||||||||||||||||||||||  | ||||||||||||||| | ||| ||||||    
T  41151684 acttatgtgtgaccaaaataacttaaaggactaatctgttacaaacctcaaacttaaat 41151742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 485
Target Start/End: Complemental strand, 6220304 - 6220240
Alignment:
Q  423 gacttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||| | |||||| |||||  |||| |||| |||||||||||||||||||||||||||    
T  6220304 gacttatgtgtgacaaaaattacttaaatgaccaatcagttacaaacctcaaacttaaaggactt 6220240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 480
Target Start/End: Original strand, 27052613 - 27052729
Alignment:
Q  366 ttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttac 463  Q
    |||||||||| ||||||||||||||  |  ||||||||| |||| | ||| ||||| ||||||||||  | |||||||||||  |  |  ||||| ||||    
T  27052613 ttatgtgtgatcaaaataacttaaaggaccaatctgttataaacctcaaacttaaaggacttatgtgcgacaaaaataacttaaagaatcaatctattac 27052712  T
Q  464 aaacctcaaacttaaag 480  Q
    |||||||||||||||||    
T  27052713 aaacctcaaacttaaag 27052729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 448
Target Start/End: Complemental strand, 15563964 - 15563880
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta 448  Q
    |||||||| ||||||||||||||| ||  |||||| |||||||| | | ||| ||||| ||||||||||| |  |||||||||||    
T  15563964 acttatgtatgaccaaaataactttaagtattaatatgttacaaccctcaaacttaaaagacttatgtgtgactaaaataactta 15563880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 38414699 - 38414597
Alignment:
Q  378 aaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgttacaaacctcaaact 475  Q
    |||| |||||||||||| |||||||||||||| | ||| |||||  | |||||||| || ||||||| ||  |||| |||| |||||||||||||||| |    
T  38414699 aaaaaaacttaaaacatcaatctgttacaaacctcaaacttaaa-aatttatgtgtgatcaaaataaattaaatgataaatatgttacaaacctcaaatt 38414601  T
Q  476 taaa 479  Q
    ||||    
T  38414600 taaa 38414597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 485
Target Start/End: Original strand, 27052613 - 27052674
Alignment:
Q  426 ttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    |||||||| || |||||||||||   ||| ||||||||| ||||||||||||||||||||||    
T  27052613 ttatgtgtgatcaaaataacttaaaggaccaatctgttataaacctcaaacttaaaggactt 27052674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 15564058 - 15564115
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    |||||||||| || ||||||||||| || || ||||| |||||||||| |||||||||    
T  15564058 acttatgtgtaacaaaaataacttagaagatcaatctattacaaacttcaaatttaaa 15564115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 445
Target Start/End: Complemental strand, 36052970 - 36052874
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataac 445  Q
    |||||||| |||  |||||| |||||||||||||||| ||||  || ||||||||  |||||| ||| ||||| ||||  ||||| || ||||||||    
T  36052970 ttacaaacttaaacaacttacgtgtgaccaaaataacataaatgatcaatctgttgtaaacttcaaacttaaaggactcgtgtgtgatcaaaataac 36052874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 484
Target Start/End: Original strand, 1127 - 1274
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||| ||| | |||||||||||||||||||||| ||||  |  |||| ||||||||  | ||| ||||||||||||||||| |  |    
T  1127 ttgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataacctaaaggaccaatcagttacaaatatcaaacttaaatgacttatgtgtgacca 1226  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggact 484  Q
    |||||||||  | ||| |||||||||||||| ||||||||||||||||    
T  1227 aaataacttaaaggaccaatctgttacaaacgtcaaacttaaaggact 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 484
Target Start/End: Original strand, 27576523 - 27576670
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||| ||| | |||||||||||||||||||||| ||||  |  |||| ||||||||  | ||| ||||||||||||||||| |  |    
T  27576523 ttgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataacctaaaggaccaatcagttacaaatatcaaacttaaatgacttatgtgtgacca 27576622  T
Q  439 aaataactt--atgacaaatctgttacaaacctcaaacttaaaggact 484  Q
    |||||||||  | ||| |||||||||||||| ||||||||||||||||    
T  27576623 aaataacttaaaggaccaatctgttacaaacgtcaaacttaaaggact 27576670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 6222198 - 6222078
Alignment:
Q  365 cttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtta 462  Q
    ||||||||||||||||||||||||||  | |||||||||||||| |||||| ||||| ||||||||||| |  ||||||||||  | ||| ||| | |||    
T  6222198 cttatgtgtgaccaaaataacttaaataactaatctgttacaaattttaaacttaaa-gacttatgtgtgactaaaataacttaaaagaccaatatatta 6222100  T
Q  463 caaacctcaaacttaaaggact 484  Q
    ||||||| ||||||||||||||    
T  6222099 caaaccttaaacttaaaggact 6222078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 479
Target Start/End: Complemental strand, 11975592 - 11975451
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| ||| |||| ||| | ||||||||||||||| |||||||||||  || ||| |||||||||| | ||| ||||| |||||||||||   ||    
T  11975592 ttgaaaacgtttaaaaacttaaaggacttatgtgtgaccacaataacttaaaggatcaatatgttacaaacctcaaacttaaaggacttatgtgtgtcaa 11975493  T
Q  439 aaataacttatga-caaatctgttacaaacctcaaacttaaa 479  Q
    ||||||||||  | | ||| | ||||||||||||||||||||    
T  11975492 aaataacttaaaaactaatttattacaaacctcaaacttaaa 11975451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 44293974 - 44294110
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | |||||| ||||||||||||||||||||  || |||||||||||||| | |||  |||| ||||||||||| |  ||||||| ||     
T  44293974 ttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaaagacttatgtgtgaccaaaataattta 44294073  T
Q  448 -atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
     | ||| ||| |||||||||||||||| |||||||||    
T  44294074 aaggactaatatgttacaaacctcaaatttaaaggac 44294110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 364 - 484
Target Start/End: Original strand, 29710537 - 29710659
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    ||||||||||||| |||||||||||||  |  |||| ||||||||  | ||| ||||||||||||||||| |  |||||||| |  | ||| ||||||||    
T  29710537 acttatgtgtgacgaaaataacttaaaggaccaatccgttacaaatctcaaacttaaatgacttatgtgttaccaaaataacctaaaagaccaatctgtt 29710636  T
Q  462 acaaacctcaaacttaaaggact 484  Q
    |||||| ||||||||||||||||    
T  29710637 acaaacgtcaaacttaaaggact 29710659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 483
Target Start/End: Original strand, 11975658 - 11975779
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    ||||||||||||| |||||||||||||  |  |||| ||||||||| | ||| ||||| ||||||| ||| | |||||||||||  | ||| ||||||||    
T  11975658 acttatgtgtgacaaaaataacttaaaggaccaatcagttacaaacctcaaacttaaaggacttatctgttacaaaaataacttaaaggaccaatctgtt 11975757  T
Q  462 acaaacctcaaacttaaaggac 483  Q
     |||| ||||||||||||||||    
T  11975758 tcaaatctcaaacttaaaggac 11975779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 483
Target Start/End: Complemental strand, 27280757 - 27280613
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaa 440  Q
    ||||||| |||||||| ||| | ||||| |||| |||||||||||||||   |||||||| |||| ||| | ||| |||||||||||||||||    |||    
T  27280757 gaaaacgtttacaaacttaaaggacttacgtgttaccaaaataacttaagtgattaatctcttacgaacctcaaacttaaatgacttatgtgtggctaaa 27280658  T
Q  441 ataactt--atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||||||  | ||| ||| ||| |||||| |||||||||||||||    
T  27280657 ataacttaaaggaccaatttgtaacaaacttcaaacttaaaggac 27280613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 448
Target Start/End: Original strand, 4048415 - 4048514
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta 448  Q
    |||||||| ||| | |||||||||| ||||||||||||||||  || |||||||||||||  |||||  |||| || ||||||||||  |||||||||||    
T  4048415 ttacaaacttaaaggacttatgtgtaaccaaaataacttaaatgatcaatctgttacaaatcttaaacctaaaagatttatgtgtcaccaaaataactta 4048514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 30662215 - 30662158
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    |||||||||| | ||||||||||||||| | ||||||||||| |||||||||||||||    
T  30662215 acttatgtgtaatcaaaataacttaaaagactaatctgttacgaactttaaatttaaa 30662158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 483
Target Start/End: Original strand, 31453052 - 31453120
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||| ||||||||||| | ||||||||||||  | || ||||||||||||||||||||||||||||||    
T  31453052 ttaaaggacttatgtgtgacaaaaataacttaaataactaatctgttacaaacctcaaacttaaaggac 31453120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 481
Target Start/End: Complemental strand, 41666285 - 41666145
Alignment:
Q  343 aaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaat 442  Q
    ||||| |||||||| |||   |||||||||| ||||||||| || |||| || ||| |||||||||| | ||| ||||| ||||||| | | | ||||||    
T  41666285 aaacgtttacaaacttaaactacttatgtgtaaccaaaatagctaaaaaaatcaatatgttacaaacctcaaacttaaaggacttatatataacaaaaat 41666186  T
Q  443 aactt--atgacaaatctgttacaaacctcaaacttaaagg 481  Q
    |||||  ||||  ||| ||||| ||||||||||||||||||    
T  41666185 aacttaaatgatcaatttgttataaacctcaaacttaaagg 41666145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 29019393 - 29019342
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaa 390  Q
    ||||||||| |||||||| ||| | |||||||||||||||||||||||||||    
T  29019393 ttgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 29019342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 483
Target Start/End: Original strand, 41666360 - 41666422
Alignment:
Q  423 gacttatgtgtcataaaaataacttatg--acaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||||||||| ||  |||||||||| |  |||||||||||||||||||||||||||||||||    
T  41666360 gacttatgtgtgatcgaaataacttaagggacaaatctgttacaaacctcaaacttaaaggac 41666422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 42312904 - 42312758
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||  ||| | ||||||||||||| |||||||  ||||  |  ||||| |||||||  | ||| ||||| ||||||||||| |  |    
T  42312904 ttgaaaacttttacaaatttaaaggacttatgtgtgacaaaaataaactaaatgaccaatctattacaaatctcaaacttaaaggacttatgtgtgacca 42312805  T
Q  439 aaataactta--tgacaaatctgttacaaacctcaaacttaaaggac 483  Q
    ||||||||||  |||| ||| | ||||||||||||||||||||||||    
T  42312804 aaataacttaaatgaccaatatattacaaacctcaaacttaaaggac 42312758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 433
Target Start/End: Complemental strand, 3198356 - 3198262
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgt 433  Q
    ||||||| | |||||||| | | ||||||||||| |||||||||||||||||| |  ||| |||||||||| | ||| |||||  ||||||||||    
T  3198356 ttgaaaatgtttacaaactttaagaacttatgtgggaccaaaataacttaaaagaccaatttgttacaaacctcaaacttaaagaacttatgtgt 3198262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 483
Target Start/End: Complemental strand, 29710440 - 29710319
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgtt 461  Q
    ||||| |||||||||||||||||||||  |  ||| |||||||||  | ||| ||||| ||||||| ||| |  |||||||||||   ||  ||||||||    
T  29710440 acttaagtgtgaccaaaataacttaaaggaccaatatgttacaaatatcaaacttaaaggacttatatgtgaccaaaataacttaaaggattaatctgtt 29710341  T
Q  462 acaaacctcaaacttaaaggac 483  Q
    |||||| |||||||||||||||    
T  29710340 acaaacgtcaaacttaaaggac 29710319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 11975657 - 11975721
Alignment:
Q  423 gacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||||| | ||||||||||||   ||| |||| |||||||||||||||||||||||||||    
T  11975657 gacttatgtgtgacaaaaataacttaaaggaccaatcagttacaaacctcaaacttaaaggactt 11975721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 22750376 - 22750319
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    |||||||||||||||||||||||||||  | |||  |||||||||||| |||||||||    
T  22750376 acttatgtgtgaccaaaataacttaaacaactaacatgttacaaacttcaaatttaaa 22750319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 43258364 - 43258299
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttat 429  Q
    ||||||||||||| |||||||||||||  || ||||| |||||||||| || |||||| |||||||    
T  43258364 acttatgtgtgacaaaaataacttaaatgatcaatctattacaaacttcaattttaaaggacttat 43258299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 480
Target Start/End: Complemental strand, 6694675 - 6694533
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||| || ||||| ||| | |||||||||| || |||||||||||||  || ||||| ||||||||   ||| ||||| ||||||||||  |  |    
T  6694675 ttgaaaacgtttgcaaacttaaaggacttatgtgtaac-aaaataacttaaaggatcaatctattacaaaccacaaacttaaaggacttatgtgggaaca 6694577  T
Q  439 aaataacttat--gacaaatctgttacaaacctcaaacttaaag 480  Q
    ||||||||||   ||| ||| | |||||||||||||||||||||    
T  6694576 aaataacttaaaagaccaatttattacaaacctcaaacttaaag 6694533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 448
Target Start/End: Original strand, 42313008 - 42313092
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactta 448  Q
    ||||||||||||||||||||| |||||  |  ||| |||||||||  | ||||||||| ||||||||||| |  |||||||||||    
T  42313008 acttatgtgtgaccaaaataatttaaaggaccaatttgttacaaatatcaaatttaaaggacttatgtgtgaccaaaataactta 42313092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Complemental strand, 4048264 - 4048217
Alignment:
Q  362 gaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    |||||||||||||||||||||||||||||  |||| ||| ||||||||    
T  4048264 gaacttatgtgtgaccaaaataacttaaagaattagtctattacaaac 4048217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 30869610 - 30869680
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||| |||||| | || ||||||||||||||   ||| ||||||||||||||||||||||||||| ||||    
T  30869610 ttaaaggacttacgcgtgataaaaataacttaaaggaccaatctgttacaaacctcaaacttaaagaactt 30869680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 485
Target Start/End: Complemental strand, 42312890 - 42312816
Alignment:
Q  413 aaatttaaatgacttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||||||| ||||||||||| | ||||||||  ||  |||| ||||| ||||||| ||||||||||||||||||    
T  42312890 aaatttaaaggacttatgtgtgacaaaaataaactaaatgaccaatctattacaaatctcaaacttaaaggactt 42312816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 483
Target Start/End: Original strand, 6694735 - 6694808
Alignment:
Q  412 taaatttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggac 483  Q
    |||| ||||| ||||||||||| |  |||||||||||   ||| ||| ||||||||||||||||||||||||||    
T  6694735 taaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaacctcaaacttaaaggac 6694808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 482
Target Start/End: Original strand, 30869592 - 30869737
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||| | |||||||| ||| | ||||| | ||||  |||||||||||||  |  |||||||||||||| | ||| |||||  |||||||| | |  |    
T  30869592 ttgaaaatgtttacaaacttaaaggacttacgcgtgataaaaataacttaaaggaccaatctgttacaaacctcaaacttaaagaacttatgtatgacca 30869691  T
Q  439 aaataacttat--gacaaatctgttacaaacctcaaacttaaagga 482  Q
    ||||||||||   ||| ||||  |||||||||||||||||||||||    
T  30869692 aaataacttaaaggaccaatcaattacaaacctcaaacttaaagga 30869737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 6069278 - 6069338
Alignment:
Q  424 acttatgtgtcataaaaataactta--tgacaaatctgttacaaacctcaaacttaaagga 482  Q
    |||||||| | || |||||||||||  ||||| || |||||||||||||||||||||||||    
T  6069278 acttatgtttgatcaaaataacttaaatgacatatatgttacaaacctcaaacttaaagga 6069338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 6694724 - 6694773
Alignment:
Q  341 gaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaa 390  Q
    ||||||| ||| |||| ||| | |||||||||||||||||||||||||||    
T  6694724 gaaaacgtttataaacttaaaggacttatgtgtgaccaaaataacttaaa 6694773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 31453059 - 31453104
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaac 409  Q
    ||||||||||||| |||||||||||||  | |||||||||||||||    
T  31453059 acttatgtgtgacaaaaataacttaaataactaatctgttacaaac 31453104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 46713271 - 46713214
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaa 421  Q
    |||||||| ||||||||||||||||||  | |||||| |||||||| | |||||||||    
T  46713271 acttatgtatgaccaaaataacttaaataactaatctattacaaacctcaaatttaaa 46713214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 364 - 484
Target Start/End: Complemental strand, 21640 - 21518
Alignment:
Q  364 acttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt--atgacaaatctgtt 461  Q
    |||||||||||||| |||||| |||||  |||| |||||||||||  | ||| ||||| ||||||||||| || ||||||||||  ||||  ||||| ||    
T  21640 acttatgtgtgaccgaaataatttaaaggattagtctgttacaaatctcaaacttaaaggacttatgtgtgattaaaataacttaaatgatcaatctatt 21541  T
Q  462 acaaacctcaaacttaaaggact 484  Q
    |||||||||||||||||||||||    
T  21540 acaaacctcaaacttaaaggact 21518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 21722 - 21859
Alignment:
Q  349 ttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt- 447  Q
    |||||||| ||| | | |||||||||||||||||||||||||| || ||| | || ||||| ||||| ||||| ||||||||||| | |||||||||||     
T  21722 ttacaaacttaaaggatttatgtgtgaccaaaataacttaaaagatcaatatattgcaaaccttaaacttaaaagacttatgtgtgacaaaaataactta 21821  T
Q  448 --atgacaaatctgttacaaacctcaaacttaaaggac 483  Q
      | ||| ||||| |||||||||||||| |||| ||||    
T  21822 aaaggaccaatctattacaaacctcaaatttaatggac 21859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 339 - 484
Target Start/End: Original strand, 161597 - 161744
Alignment:
Q  339 ttgaaaacgcttacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataa 438  Q
    ||||||||  |||||||| ||| | |||||||||||||||||||||| ||||  |  |||||||||||||  | ||||||||| ||||||||||| |  |    
T  161597 ttgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataacctaaaggaccaatctgttacaaatatcaaatttaaaggacttatgtgtgacca 161696  T
Q  439 aaataacttat--gacaaatctgttacaaacctcaaacttaaaggact 484  Q
    ||||||||||   ||  ||||| |||||||| ||||||||||||||||    
T  161697 aaataacttaaaggatcaatctattacaaacatcaaacttaaaggact 161744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 483
Target Start/End: Complemental strand, 161538 - 161403
Alignment:
Q  350 tacaaacataaggaacttatgtgtgaccaaaataacttaaaacattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttat 449  Q
    ||||||| ||| | ||||||||||||| ||||||| |||||  |  |||||||||||||  | ||| ||||| ||||||||||| |  ||||||| |||     
T  161538 tacaaacttaaaggacttatgtgtgacaaaaataagttaaaggaccaatctgttacaaatctcaaacttaaaggacttatgtgtgaccaaaataagttaa 161439  T
Q  450 --gacaaatctgttacaaacctcaaacttaaaggac 483  Q
      ||| ||||||||||||||||||||||||||||||    
T  161438 aggaccaatctgttacaaacctcaaacttaaaggac 161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 161531 - 161461
Alignment:
Q  417 ttaaatgacttatgtgtcataaaaataacttat--gacaaatctgttacaaacctcaaacttaaaggactt 485  Q
    ||||| ||||||||||| | |||||||| |||   ||| ||||||||||||| ||||||||||||||||||    
T  161531 ttaaaggacttatgtgtgacaaaaataagttaaaggaccaatctgttacaaatctcaaacttaaaggactt 161461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 370 - 480
Target Start/End: Original strand, 2400 - 2517
Alignment:
Q  370 gtgtgaccaaaataacttaaa----acattaatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataactt---atgacaaatctgtta 462  Q
    |||||| ||||||||||||||    | |||||||||||||||||   ||| ||||||||||||||||| |  ||||||||||   | ||| ||||| |||    
T  2400 gtgtgatcaaaataacttaaatgacaaattaatctgttacaaaccacaaacttaaatgacttatgtgtgaacaaaataacttaaaaggaccaatctatta 2499  T
Q  463 caaacctcaaacttaaag 480  Q
    ||||||||||||||||||    
T  2500 caaacctcaaacttaaag 2517  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 479
Target Start/End: Original strand, 12294 - 12377
Alignment:
Q  396 aatctgttacaaactttaaatttaaatgacttatgtgtcataaaaataacttatgacaaatctgttacaaacctcaaacttaaa 479  Q
    |||||||||||||| | ||| |||| |||||||| ||| || |||||||||||  |  ||||| ||||||||||||||||||||    
T  12294 aatctgttacaaacctcaaacttaattgacttatatgtgatcaaaataacttaaaatcaatctattacaaacctcaaacttaaa 12377  T

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