View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326_low_11 (Length: 485)
Name: NF1326_low_11
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 98 - 410
Target Start/End: Original strand, 13867545 - 13867857
Alignment:
| Q |
98 |
gtaagaagggcattataaataaaaacataactgtcctcgttctcatttttt-cttctccatacatccgtttcccnnnnnnnnnnnnnnnnnnnnntggtg |
196 |
Q |
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| T |
13867545 |
gtaagaagggcattataaataaaagcataactgtcctcgttctcatttttttcttctccatacatccgtttcccaaaaagaaaagaaaaataaaatggtg |
13867644 |
T |
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| Q |
197 |
ggcaccgtcgtcgaccgtcagcccaacgtggatcatatcatttacatcgtcaacctgtggggcaccaatatcatcgtcacagttacttccgttgcctccg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13867645 |
ggcaccgtcgtcgaccgtcagcccaacgtggatcatatcatttacatcgtcaacctgtggggcaccaatatcatcgtcacagttacttccgttgcctcc- |
13867743 |
T |
|
| Q |
297 |
tcgtccaaacctggatcgaaaaggcgctccaactccgtagcgatgtctatcccaagtttaccttcatcataggcttcaccattgatccggacataaacac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
13867744 |
tcgtccaaacctggatcgaaaaggcgctccaactccgtagcgatgtctatcccaagtttaccttcatcttaggcttcgccattgatccggacataaacac |
13867843 |
T |
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| Q |
397 |
attgcagttctgtg |
410 |
Q |
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||||||||||||| |
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| T |
13867844 |
gttgcagttctgtg |
13867857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 11876614 - 11876557
Alignment:
| Q |
230 |
catatcatttacatcgtcaacctgtggggcaccaatatcatcgtcacagttacttccg |
287 |
Q |
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|||| ||||||||| || ||||||| | |||||||||||||||||||||||||||| |
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| T |
11876614 |
cataacatttacattgtaaacctgtacgataccaatatcatcgtcacagttacttccg |
11876557 |
T |
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