View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326_low_19 (Length: 403)
Name: NF1326_low_19
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 130 - 397
Target Start/End: Original strand, 9867821 - 9868088
Alignment:
| Q |
130 |
acattcgcaaaagactagtcgattgtggtttgcctttagtagcgatcttagtggtaattggatcacactgtctagaaaagttttattcacgtggaattta |
229 |
Q |
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| T |
9867821 |
acattcgcaaaagactagtcgactgtggtttgcctttagtagcgatcgtagtggtaattggatcacaccatctagaaaagttttattaacgtggaattta |
9867920 |
T |
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| Q |
230 |
gtcatgcatggctaaacaaatatgactcaatcatcatattcacgatgcatgacgaaatcatgatcaaagagagactggcgtcgcttctttatatttcacc |
329 |
Q |
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| T |
9867921 |
gtcatgcatggctaaacaaatatgattcaatcatcatattcacgatgcatggcgaaatcatgatcaaagagagactggcgtcgcttccttatatttcacc |
9868020 |
T |
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| Q |
330 |
aatgttccaaagcaatttttgtatgttgaattaaggatagggtttgatgtgtgtggtatattattcga |
397 |
Q |
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| T |
9868021 |
aatgttccaaagcaatttttgtatgttgaattaaggaaagggtttgatgtgtgtggtatattgttcga |
9868088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 9867663 - 9867765
Alignment:
| Q |
31 |
ggatatgggtcatgggaggatgatcgacgacatgccaagtttcagagtttctcgcggcaagggggagaatcaacagtaatcaaagggttgaagacttcaa |
130 |
Q |
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| T |
9867663 |
ggatatgggtcatgggaggatgatcgaggacatgccaagtttcagagtttctcgcggcaagggggagaatcaatagtcatcaaagggttgaagacttcaa |
9867762 |
T |
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| Q |
131 |
cat |
133 |
Q |
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| T |
9867763 |
cat |
9867765 |
T |
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