View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326_low_20 (Length: 331)

Name: NF1326_low_20
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326_low_20
NF1326_low_20
[»] chr7 (7 HSPs)
chr7 (1-295)||(34529634-34529928)
chr7 (1-295)||(45574708-45575002)
chr7 (13-295)||(17990372-17990654)
chr7 (160-260)||(48513474-48513574)
chr7 (175-260)||(42105292-42105377)
chr7 (160-251)||(48727916-48728007)
chr7 (175-251)||(3718283-3718359)
[»] chr3 (4 HSPs)
chr3 (1-295)||(35028840-35029134)
chr3 (160-260)||(38327733-38327833)
chr3 (160-260)||(46073497-46073597)
chr3 (160-251)||(55488800-55488891)
[»] chr4 (1 HSPs)
chr4 (144-248)||(56288562-56288666)
[»] scaffold0014 (2 HSPs)
scaffold0014 (160-260)||(173660-173760)
scaffold0014 (160-251)||(143875-143966)
[»] chr8 (4 HSPs)
chr8 (160-260)||(44198044-44198144)
chr8 (160-260)||(20793586-20793686)
chr8 (160-260)||(23929007-23929107)
chr8 (178-239)||(35290190-35290251)
[»] chr6 (1 HSPs)
chr6 (160-260)||(29651921-29652021)
[»] chr5 (2 HSPs)
chr5 (160-260)||(36662673-36662773)
chr5 (160-260)||(36679005-36679105)
[»] chr2 (3 HSPs)
chr2 (160-260)||(12504867-12504967)
chr2 (160-260)||(14680959-14681059)
chr2 (175-227)||(3220470-3220522)
[»] chr1 (3 HSPs)
chr1 (160-260)||(52609052-52609152)
chr1 (160-248)||(52887865-52887953)
chr1 (175-248)||(29887111-29887184)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 34529634 - 34529928
Alignment:
Q  1 cgaatgcgagcaataaactcaacaatcgagcgcgttccttttgtaattgttctaagttcagaacgaagttgtcttgacctagtacgcatctgagtgtagc 100  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34529634 cgaatgcgagcgataaactcagcaatcgagcgcgttccttttgtaatagttctaagttcagaacgaagttgtcttgacctagtacgcatctgagtgtagc 34529733  T
Q  101 agtaattgtgaattttgtcccatacctgatgcgaaaacctaagtcgaacaaaacacgatagtagagaagacgagatcgtggaaagaatccacgtacagag 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34529734 agtaattgtgaatttcatcccatacctgatgcgaaaacctaagtcgaacaaaacgcgatagtagagaagacgagatcgtggaaagaatccacgtacagag 34529833  T
Q  201 caacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcgccgcgtcgttgaggaaaactggtgggatctgtggtg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  34529834 caacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcgccgcgtcgttgaggaaaaccggtgggatctgcggtg 34529928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 45574708 - 45575002
Alignment:
Q  1 cgaatgcgagcaataaactcaacaatcgagcgcgttccttttgtaattgttctaagttcagaacgaagttgtcttgacctagtacgcatctgagtgtagc 100  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45574708 cgaatgcgagcgataaactcagcaatcgagcgcgttccttttgtaatagttctaagttcagaacgaagttgtcttgacctagtacgcatctgagtgtagc 45574807  T
Q  101 agtaattgtgaattttgtcccatacctgatgcgaaaacctaagtcgaacaaaacacgatagtagagaagacgagatcgtggaaagaatccacgtacagag 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45574808 agtaattgtgaatttcatcccatacctgatgcgaaaacctaagtcgaacaaaacgcgatagtagagaagacgagatcgtggaaagaatccacgtacagag 45574907  T
Q  201 caacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcgccgcgtcgttgaggaaaactggtgggatctgtggtg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  45574908 caacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcgccgcgtcgttgaggaaaaccggtgggatctgcggtg 45575002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 17990654 - 17990372
Alignment:
Q  13 ataaactcaacaatcgagcgcgttccttttgtaattgttctaagttcagaacgaagttgtcttgacctagtacgcatctgagtgtagcagtaattgtgaa 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17990654 ataaactcagcaatcgagcgcgttccttttgtaattgttctaagttcagaacgaagttgtcttgacctagtatgcatctgagtgtagcagtaattgtgaa 17990555  T
Q  113 ttttgtcccatacctgatgcgaaaacctaagtcgaacaaaacacgatagtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttg 212  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17990554 tttcgtcccatacctgatgcgaaaacctaagtcgaacaaaacgcgatagtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttg 17990455  T
Q  213 ctcttcccattcagtatacgccggattctcagttccagcctcacgcgccgcgtcgttgaggaaaactggtgggatctgtggtg 295  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  17990454 ctcttcccattcggtatacgccggattctcaattccagcctcacgcgccgcgtcgttgaggaaaaccggtgggatctgcggtg 17990372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 48513474 - 48513574
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  48513474 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 48513573  T
Q  260 c 260  Q
    |    
T  48513574 c 48513574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 42105377 - 42105292
Alignment:
Q  175 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcgc 260  Q
    ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || |||||    
T  42105377 atcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctcggttccagcttcgcgcgc 42105292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 48727916 - 48728007
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagc 251  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||| ||| || || |||||||| ||||||||    
T  48727916 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccatttagtgtaagcaggattctccgttccagc 48728007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 3718283 - 3718359
Alignment:
Q  175 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagc 251  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||| || || || |||||||  ||||||||    
T  3718283 atcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcggtgtaagcaggattcttcgttccagc 3718359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 35028840 - 35029134
Alignment:
Q  1 cgaatgcgagcaataaactcaacaatcgagcgcgttccttttgtaattgttctaagttcagaacgaagttgtcttgacctagtacgcatctgagtgtagc 100  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35028840 cgaatgcgagcgataaactcagcaatcgagcgcgttccttttgtaatagttctaagttcagaacgaagttgtcttgacctagtacgcatctgagtgtagc 35028939  T
Q  101 agtaattgtgaattttgtcccatacctgatgcgaaaacctaagtcgaacaaaacacgatagtagagaagacgagatcgtggaaagaatccacgtacagag 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35028940 agtaattgtgaatttcatcccatacctgatgcgaaaacctaagtcgaacaaaacgcgatagtagagaagacgagatcgtggaaagaatccacgtacagag 35029039  T
Q  201 caacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcgccgcgtcgttgaggaaaactggtgggatctgtggtg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  35029040 caacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcgccgcgtcgttgaggaaaaccggtgggatctgcggtg 35029134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 38327733 - 38327833
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  38327733 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 38327832  T
Q  260 c 260  Q
    |    
T  38327833 c 38327833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 46073597 - 46073497
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  46073597 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 46073498  T
Q  260 c 260  Q
    |    
T  46073497 c 46073497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 55488891 - 55488800
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagc 251  Q
    ||||| |||| ||| ||||| ||||||| ||| || |||||||| |||||||| |||||||||||||| || || | |||||| ||||||||    
T  55488891 agtagcgaaggcgaaatcgttgaaagaacccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcagaattctccgttccagc 55488800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 56288562 - 56288666
Alignment:
Q  144 tcgaacaaaacacgatagtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctca 243  Q
    ||||||||| | ||| |||||||| || ||||||||||| |||||||| ||||| ||||  |||||||| ||||||||||| |||||||||||||||||     
T  56288562 tcgaacaaagcgcgagagtagagacgatgagatcgtggagagaatccatgtacacagcagagaatcttgttcttcccattcggtatacgccggattctcc 56288661  T
Q  244 gttcc 248  Q
    |||||    
T  56288662 gttcc 56288666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 173760 - 173660
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  173760 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 173661  T
Q  260 c 260  Q
    |    
T  173660 c 173660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 143966 - 143875
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagc 251  Q
    ||||| |||| ||||||||| ||||||||||| || | |||||| |||||||| |||||||||||||| || || |||||||| ||||||||    
T  143966 agtagcgaaggcgagatcgttgaaagaatccaggtgctgagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagc 143875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 44198144 - 44198044
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  44198144 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 44198045  T
Q  260 c 260  Q
    |    
T  44198044 c 44198044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 20793686 - 20793586
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || ||  ||||||| |||||||| || ||||    
T  20793686 agtagcgaaggcgatatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcatgattctccgttccagcttcgcgcg 20793587  T
Q  260 c 260  Q
    |    
T  20793586 c 20793586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 23929007 - 23929107
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| |||||||| || || |||||||| |||||||| |||||||||||||| || || ||||| || |||||||| || ||||    
T  23929007 agtagcgaaggcgaaatcgttgaaagaattcaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattatccgttccagcttcgcgcg 23929106  T
Q  260 c 260  Q
    |    
T  23929107 c 23929107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 35290251 - 35290190
Alignment:
Q  178 gtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggatt 239  Q
    ||||| |||||||||||||| |||||||| |||||||| ||||| || ||  ||||||||||    
T  35290251 gtggagagaatccacgtacacagcaacgagtcttgctcctcccaatcggtgaacgccggatt 35290190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 29652021 - 29651921
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  29652021 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 29651922  T
Q  260 c 260  Q
    |    
T  29651921 c 29651921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 36662773 - 36662673
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  36662773 agtagcgaagccgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 36662674  T
Q  260 c 260  Q
    |    
T  36662673 c 36662673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 36679005 - 36679105
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  36679005 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 36679104  T
Q  260 c 260  Q
    |    
T  36679105 c 36679105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 12504967 - 12504867
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  12504967 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 12504868  T
Q  260 c 260  Q
    |    
T  12504867 c 12504867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 14680959 - 14681059
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  14680959 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 14681058  T
Q  260 c 260  Q
    |    
T  14681059 c 14681059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 3220522 - 3220470
Alignment:
Q  175 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagt 227  Q
    ||||| ||||||||||| || |||||||| |||||||| ||||||||||||||    
T  3220522 atcgttgaaagaatccaggtgcagagcaaagaatcttgttcttcccattcagt 3220470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 52609052 - 52609152
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttccagcctcacgcg 259  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| || ||||    
T  52609052 agtagcgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttccagcttcgcgcg 52609151  T
Q  260 c 260  Q
    |    
T  52609152 c 52609152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 52887953 - 52887865
Alignment:
Q  160 agtagagaagacgagatcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttcc 248  Q
    ||||| |||| ||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||    
T  52887953 agtagtgaaggcgaaatcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttcc 52887865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 29887184 - 29887111
Alignment:
Q  175 atcgtggaaagaatccacgtacagagcaacgaatcttgctcttcccattcagtatacgccggattctcagttcc 248  Q
    ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| |||||    
T  29887184 atcgttgaaagaatccaggtgcagagcaatgaatcttgttcttcccattcagtgtaagcaggattctccgttcc 29887111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University