View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326_low_25 (Length: 279)

Name: NF1326_low_25
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326_low_25
NF1326_low_25
[»] chr4 (1 HSPs)
chr4 (37-242)||(8438688-8438893)
[»] chr8 (1 HSPs)
chr8 (37-242)||(8746732-8746937)
[»] chr7 (1 HSPs)
chr7 (37-242)||(22827337-22827541)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 8438893 - 8438688
Alignment:
Q  37 agcagagagatatgagttgctgccatcttttgaagttgttttactaaatgttgaatgaaggtaaggtagcttaaagatctatcaagttggttacaaatta 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8438893 agcagagagatatgagttgctgccatcttttgaagttgttttactaaatgttgaatgaaggtaaggtagcttaaagatctatcaagttggttacaaatta 8438794  T
Q  137 tcaagggggtgagttgcagctttgggattaaatttttatgagatagagttttttaattttcgaatttggggataaatttctgggttgtttatgcatgaat 236  Q
    |||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8438793 tcaaagggatgagttgcaactttgggattaaatttctatgagatagagttttttaattttcgaatttggggataaatttctgggttgtttatgcatgaat 8438694  T
Q  237 ctgtgg 242  Q
    ||||||    
T  8438693 ctgtgg 8438688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 8746937 - 8746732
Alignment:
Q  37 agcagagagatatgagttgctgccatcttttgaagttgttttactaaatgttgaatgaaggtaaggtagcttaaagatctatcaagttggttacaaatta 136  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8746937 agcatagagatatgagttgctgccatcttttgaagttgttttactaaatgttgaatgaaggtaaggtagcttaaagatctatcaagttggttacaaatta 8746838  T
Q  137 tcaagggggtgagttgcagctttgggattaaatttttatgagatagagttttttaattttcgaatttggggataaatttctgggttgtttatgcatgaat 236  Q
    |||| ||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8746837 tcaaagggatgagttgcaactttgggattaaatttctatgagatagagttttttaattttcgaatttggggataaatttctgggttatttatgcatgaat 8746738  T
Q  237 ctgtgg 242  Q
    ||||||    
T  8746737 ctgtgg 8746732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 22827541 - 22827337
Alignment:
Q  37 agcagagagatatgagttgctgccatcttttgaagttgttttactaaatgttgaatgaaggtaaggtagcttaaagatctatcaagttggttacaaatta 136  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22827541 agcagagagaaatgagttgctgccatcttttgaagttgttttactaaatgttgaatgaaggtaaggtagcttaaagatctatcaagttggttacaaatta 22827442  T
Q  137 tcaagggggtgagttgcagctttgggattaaatttttatgagatagagttttttaattttcgaatttggggataaatttctgggttgtttatgcatgaat 236  Q
    |||| ||| ||||||||| ||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  22827441 tcaaagggatgagttgcaactttgggattaaa-ttctatgtgatagagttttttaattttcgaatttggtgataaatttctaggttgtttatgcatgaat 22827343  T
Q  237 ctgtgg 242  Q
     |||||    
T  22827342 ttgtgg 22827337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University