View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326_low_27 (Length: 275)
Name: NF1326_low_27
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 15379645 - 15379875
Alignment:
| Q |
16 |
atgttgtgaagtactagtaatagtgaatttgtgttgtattgtactttaacttttcttcaatttgtgaatatatttttgcagaggccagcattcttgcata |
115 |
Q |
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| T |
15379645 |
atgttgtgaagtactagtaatagtgaatttgtgttgtattgtactttaacttttcttcaatttgtgaatatatttttgcagaggccagcattcttgcata |
15379744 |
T |
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| Q |
116 |
ttggccctcatgcattgctgccgcggctatactctatgcagctaacgaaattcctaattggtctctcgttgagcccgagcatgccgagtcgtggtgcgag |
215 |
Q |
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| T |
15379745 |
ttggccctcatgcattgctgccgcggctatactctatgcagctaacgaaattcctaattggtctctcgttgagcccgagcatgccgagtcgtggtgcgag |
15379844 |
T |
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| Q |
216 |
gggctaagaaaagtaagtgaatgtttggaat |
246 |
Q |
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| T |
15379845 |
gggctaagaaaagtaagtgaatgtttggaat |
15379875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 7706669 - 7706544
Alignment:
| Q |
27 |
tactagtaatagtgaatttgtgttgtattgtactttaacttttcttcaatttgtgaatatatttttgcagaggccagcattcttgcatattggccctcat |
126 |
Q |
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| T |
7706669 |
tactagtactagttaacttgtgttgtaatatactttaactttatttcagcttgtgaatatatttttgcagaggccagaattattggatgttggccctcat |
7706570 |
T |
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| Q |
127 |
gcattgctgccgcggctatactctat |
152 |
Q |
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| T |
7706569 |
gcattactgccgcggctataccctat |
7706544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 26436223 - 26436109
Alignment:
| Q |
118 |
ggccctcatgcattgctgccgcggctatactctatgcagctaacgaaattcctaattggtctctcgttgagcccgagcatgccgagtcgtggtgcgaggg |
217 |
Q |
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|||| |||||||||||||| || || ||||||| ||||||||| |||||||||||||||||| | ||| | || |||||||| || || ||||| || || |
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| T |
26436223 |
ggccatcatgcattgctgcagctgccatactctctgcagctaatgaaattcctaattggtcttttgttaatcctgagcatgctgaatcatggtgtgaagg |
26436124 |
T |
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| Q |
218 |
gctaagaaaagtaag |
232 |
Q |
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||||| |||||||| |
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| T |
26436123 |
actaagcaaagtaag |
26436109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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