View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326_low_30 (Length: 268)

Name: NF1326_low_30
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326_low_30
NF1326_low_30
[»] chr8 (2 HSPs)
chr8 (142-265)||(769807-769930)
chr8 (185-259)||(16396591-16396668)
[»] chr2 (5 HSPs)
chr2 (10-133)||(27985871-27985994)
chr2 (10-133)||(28072402-28072525)
chr2 (44-107)||(28153471-28153534)
chr2 (46-133)||(28179935-28180022)
chr2 (62-133)||(28172184-28172256)
[»] chr3 (1 HSPs)
chr3 (10-133)||(24747413-24747536)
[»] chr1 (3 HSPs)
chr1 (35-133)||(26414750-26414848)
chr1 (214-262)||(52936161-52936210)
chr1 (214-262)||(52943796-52943845)
[»] chr6 (1 HSPs)
chr6 (184-246)||(22391825-22391887)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 769807 - 769930
Alignment:
Q  142 ttttttcattcaattcaatccatgactatttccacttttaagtataataacaaagtttgttacacaattagttaacctttctattctattttggtttagt 241  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  769807 ttttttcgttcaattcaatccatgactatttccactttcaagtataataacgaagtttgttacacaattggttaacctttctattctattttggtttagt 769906  T
Q  242 tttttgattgatattttgtacata 265  Q
    ||||||||||||||| ||||||||    
T  769907 tttttgattgatattctgtacata 769930  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 16396591 - 16396668
Alignment:
Q  185 ataataacaaagtttgttacacaattagttaacctttctattctattttggttta---gttttttgattgatattttg 259  Q
    |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||    |||||||||||||||||||    
T  16396591 ataataacaaagttggttacacaattggttaacctttctcttctattttggtttaatttttttttgattgatattttg 16396668  T

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Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 27985871 - 27985994
Alignment:
Q  10 attatactgatgtgtatatggatagtgctatatttagtgtgattggtcagacaatgtactttaaataatgtataaattatgggctgtagcatatgatgat 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  27985871 attattctgatgtgtatatggatagtgctatatttagtgtgattggtcagacaatgtacttgaaataatgtataaattatgggctaaagcatatgatgat 27985970  T
Q  110 atctcttattaaagattagtttta 133  Q
    |||||||||||||| |||||||||    
T  27985971 atctcttattaaagcttagtttta 27985994  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 28072402 - 28072525
Alignment:
Q  10 attatactgatgtgtatatggatagtgctatatttagtgtgattggtcagacaatgtactttaaataatgtataaattatgggctgtagcatatgatgat 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  28072402 attattctgatgtgtatatggatagtgctatatttagtgtgattggtcagacaatgtacttgaaataatgtataaattatgggctaaagcatatgatgat 28072501  T
Q  110 atctcttattaaagattagtttta 133  Q
    |||||||||||||| |||||||||    
T  28072502 atctcttattaaagcttagtttta 28072525  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 28153534 - 28153471
Alignment:
Q  44 tagtgtgattggtcagacaatgtactttaaataatgtataaattatgggctgtagcatatgatg 107  Q
    ||||||||||||||||||||||||||  ||||||||| | ||||||||||| ||| ||||||||    
T  28153534 tagtgtgattggtcagacaatgtactagaaataatgtgtgaattatgggctatagaatatgatg 28153471  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 28180022 - 28179935
Alignment:
Q  46 gtgtgattggtcagacaatgtactttaaataatgtataaattatgggctgtagcatatgatgatatctcttattaaagattagtttta 133  Q
    ||||||||||||| ||||||||||| ||||||||| | ||||||||||| | |||||||||| ||  ||||||  ||| |||||||||    
T  28180022 gtgtgattggtcatacaatgtacttgaaataatgtgtgaattatgggctattgcatatgatggtaattcttatcgaagcttagtttta 28179935  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 28172256 - 28172184
Alignment:
Q  62 aatgtactttaaataatgtataaattatgg-gctgtagcatatgatgatatctcttattaaagattagtttta 133  Q
    ||||||||| ||||||||| | |||||||| ||| ||||||||||||  ||||||||||||||  ||||||||    
T  28172256 aatgtacttgaaataatgtgtgaattatggagctatagcatatgatggcatctcttattaaagcatagtttta 28172184  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 24747413 - 24747536
Alignment:
Q  10 attatactgatgtgtatatggatagtgctatatttagtgtgattggtcagacaatgtactttaaataatgtataaattatgggctgtagcatatgatgat 109  Q
    ||||| |||||||||||||  | | ||||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||| ||||||||||||||    
T  24747413 attattctgatgtgtatatcaacattgctatatttagtgtgattggtccgacaatgtacttgaaataatgtgtgaattatgggctatagcatatgatgat 24747512  T
Q  110 atctcttattaaagattagtttta 133  Q
    ||||||||| |||| |||||||||    
T  24747513 atctcttatcaaagcttagtttta 24747536  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 26414848 - 26414750
Alignment:
Q  35 tgctatatttagtgtgattggtcagacaatgtactttaaataatgtataaattatgggctgtagcatatgatgatatctcttattaaagattagtttta 133  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||| |||||||| ||| || |||||||||||| |||||||||    
T  26414848 tgctatatttagtgtgattggttagacaatgtacttgaaataatgtgtgaattatgggctctagcatattatggtacctcttattaaagcttagtttta 26414750  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 52936161 - 52936210
Alignment:
Q  214 taacctttctattctattttggtttagttt-tttgattgatattttgtac 262  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  52936161 taacctttctattctattttgatttagtttatttcattgatattttgtac 52936210  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 52943796 - 52943845
Alignment:
Q  214 taacctttctattctattttggtttagttt-tttgattgatattttgtac 262  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  52943796 taacctttctattctattttgatttagtttatttcattgatattttgtac 52943845  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 22391887 - 22391825
Alignment:
Q  184 tataataacaaagtttgttacacaattagttaacctttctattctattttggtttagtttttt 246  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  22391887 tatattaacaaagttggttacacaattggttaacctttctattctattttggtttaatttttt 22391825  T

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