View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326_low_31 (Length: 264)
Name: NF1326_low_31
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_low_31 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 770115 - 770243
Alignment:
| Q |
1 |
tgataaatttgtgtttcatgttttgaacaatttatatagtattatgtatata-----------------agcaactgtacgtgcgtattgtactgagaac |
83 |
Q |
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| T |
770115 |
tgataaatttgtgtttcatgttttgaacaatttatatagtattatgtatataagcatgtctgtattataagcaactgtatgtgcgtattgtactgagaac |
770214 |
T |
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| Q |
84 |
taatgaaactttgtgcgttacttccttac |
112 |
Q |
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| T |
770215 |
taatgaaactttgtgcgttacttccttac |
770243 |
T |
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Target: scaffold0014 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 33003 - 33072
Alignment:
| Q |
105 |
ttccttacacataattaaagttgacattgggttgtttgggcctattaggaattaaggtatggagatttca |
174 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33003 |
ttccttacacagaactaaagttgacattgggttgtttgggcctattaggaattaaggtatggagatttca |
33072 |
T |
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