View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1326_low_35 (Length: 251)
Name: NF1326_low_35
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 22536409 - 22536184
Alignment:
| Q |
17 |
accacgtatcattcatccaactccttaaatggagtaaatggaacatacttaaactcactaattttgttctaacaactagttccactctccactctcaact |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
22536409 |
accacgtatcattcatccaacatcttaaatgaagtaaatggagcatacttaaactcactaattttgttctaacaactagttccactctccgctatcaact |
22536310 |
T |
|
| Q |
117 |
acttgaacaaaatacaaatacatcagaacggtaacatatgtcatttaaacagtagtatctattaactttaacatcaaaatagaattggactgccaatact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22536309 |
acttgaacaaaatacaaatacatcagaacggtaacatatgtcatttaaacagtagtatttgttaactttaacatcaaaatagaattggactgcccatact |
22536210 |
T |
|
| Q |
217 |
cacgtatggacccactagccctatgc |
242 |
Q |
| |
|
||| || ||||||||||||||||||| |
|
|
| T |
22536209 |
cacataaggacccactagccctatgc |
22536184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University