View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1326_low_43 (Length: 203)

Name: NF1326_low_43
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1326_low_43
NF1326_low_43
[»] chr4 (1 HSPs)
chr4 (1-107)||(56067972-56068078)
[»] chr2 (1 HSPs)
chr2 (11-106)||(9722720-9722815)
[»] chr8 (1 HSPs)
chr8 (1-106)||(38281652-38281757)
[»] chr1 (1 HSPs)
chr1 (1-103)||(39786325-39786427)
[»] chr7 (2 HSPs)
chr7 (56-103)||(22139957-22140004)
chr7 (56-103)||(40539347-40539394)
[»] chr3 (1 HSPs)
chr3 (11-103)||(23569781-23569873)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 56067972 - 56068078
Alignment:
Q  1 agaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56067972 agaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgat 56068071  T
Q  101 gatcttg 107  Q
    |||||||    
T  56068072 gatcttg 56068078  T

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Target: chr2 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 9722720 - 9722815
Alignment:
Q  11 caagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatctt 106  Q
    |||||||||||||||||||| || || |||||||| || ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  9722720 caagagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatctt 9722815  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 38281652 - 38281757
Alignment:
Q  1 agaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgat 100  Q
    ||||||| | ||||| ||||| || |||||||| || ||||| || |||||||| ||||| |||||||||| ||| || ||||| ||||| || ||||||    
T  38281652 agaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaattaatggtgat 38281751  T
Q  101 gatctt 106  Q
    ||||||    
T  38281752 gatctt 38281757  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 39786427 - 39786325
Alignment:
Q  1 agaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgat 100  Q
    |||||| |||||||||||||| ||||||||  | || ||  |||| |||||||||||||| |||||||| || |||||| | |||||| | || ||||||    
T  39786427 agaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgat 39786328  T
Q  101 gat 103  Q
    |||    
T  39786327 gat 39786325  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 22139957 - 22140004
Alignment:
Q  56 tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat 103  Q
    ||||| |||||||||| ||||||||||||||| || ||||||||||||    
T  22139957 tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat 22140004  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 40539347 - 40539394
Alignment:
Q  56 tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat 103  Q
    ||||| |||||||||| ||||||||||||||| || ||||||||||||    
T  40539347 tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat 40539394  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 23569781 - 23569873
Alignment:
Q  11 caagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat 103  Q
    ||||||||||| ||||||||||| |||||||| || || ||||| || || ||||||||    |||||| ||||||| || ||||| ||||||    
T  23569781 caagagtgtgtttcagagttcatcagcttcatcaccggcgaagcctccgataagtgtcaacgtgagaagcggaagacgatcaacggcgatgat 23569873  T

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