View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326_low_8 (Length: 515)
Name: NF1326_low_8
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Complemental strand, 31121900 - 31121431
Alignment:
| Q |
17 |
ttatgtcgtaggaggagaacattgtccgcttcttattttattttggtgcagtaggtagtaagagtaacgataactttttaaaaactcatgtagtttactt |
116 |
Q |
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| T |
31121900 |
ttatgtcgtaggaggagaacattgttcgcttcttattttattttggtgtagtaggtagtaagagtaacgataactttttgaaaactcatgtagtttactt |
31121801 |
T |
|
| Q |
117 |
cttattttcaattattcaatacttttaattttagtgataagtaatacactttaaataaacattgaaagactatagaattagttgacaaaaatatcatttt |
216 |
Q |
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| T |
31121800 |
cttattttcaattattcaatacttttaattttagtgataagtaatacactttaaataaacattgaaagactatagaattagttgacaaaaatataatatt |
31121701 |
T |
|
| Q |
217 |
tcaaaggaagataatttattaattaaattgacactcatggccattttacaaccatcccctactaaaatttgaaacaataccttgaaagtgcaaggctaag |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31121700 |
tcataggaagataatttattaattaaattgacactcatggccattttacaaccatcccctactaaaatttgaaacaataccttgaaagtgcaaggctaag |
31121601 |
T |
|
| Q |
317 |
ctcttgcatccattaattggatatttttattaaaagaacgacactcaccgttcaaacatcctccatctacgtttattttccatgagcaatctctacaacc |
416 |
Q |
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| T |
31121600 |
ctcttgcatccattaattggatatttttattaaaagaacgacactcaccgttcaaacatcctccatctacatttattttccatgagcaatctctacaatc |
31121501 |
T |
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| Q |
417 |
atcattttttgcatcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaag |
486 |
Q |
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| T |
31121500 |
gtcattttttgcatcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaag |
31121431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 6613655 - 6613566
Alignment:
| Q |
231 |
tttattaattaaattgacact-catggccattttacaaccatcccctactaaaatttgaaacaataccttgaaagtgcaaggctaagctc |
319 |
Q |
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|||||||||||||||| || | ||| |||||||||||||| || | |||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
6613655 |
tttattaattaaattggcattacatagccattttacaaccgtcaaatgctaagatttgaaagaataccttgaaagtacaaggctaagctc |
6613566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 6614158 - 6614118
Alignment:
| Q |
177 |
attgaaagactatagaattagttgacaaaaatatcattttt |
217 |
Q |
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| T |
6614158 |
attgaaagactagagaattatttgacaaaaatataattttt |
6614118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 17373706 - 17373743
Alignment:
| Q |
361 |
tcaccgttcaaacatcctccatctacgtttattttcca |
398 |
Q |
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| T |
17373706 |
tcaccgttcaaacatcctccatttaagtttattttcca |
17373743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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