View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1326_low_9 (Length: 512)
Name: NF1326_low_9
Description: NF1326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1326_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 187 - 512
Target Start/End: Original strand, 34431223 - 34431548
Alignment:
| Q |
187 |
gacaacatacacctctggttgatacaaatatagctcagttttcaacattagatcaaaatagtaaagagtagtattatttttcaaaggagtagataacaga |
286 |
Q |
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| T |
34431223 |
gacaacatacacctctggttgatacaaatatagctcagttttcaacattagatcaaaatagtaaagagtagtattatttttcaaaggagtagataacaga |
34431322 |
T |
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| Q |
287 |
tgtagacagagatgcctctggacaaagaattattgttggccacgtggtttgtaactcaattacttccgtccatcatgtacatttgtttctccaatcccag |
386 |
Q |
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| T |
34431323 |
tgtagacagagatgcctctggacaaagaattattgttggccacgtggtttgtaactcaattacttccgtccatcatgtacatttgtttctccaatcccag |
34431422 |
T |
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| Q |
387 |
ttgttgctaactcctatatacctttttggccccacaccccacttaactgattaccagaatcacggtgtcatcataattttatcaaaaactattgaacaaa |
486 |
Q |
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| T |
34431423 |
ctgttgctaactcctatatacctttttggccccacaccccacttaattgtttaacagaatcacggtgtcatcataattttatcaaaaactataaaacaaa |
34431522 |
T |
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| Q |
487 |
attataatgttatcgtgattctgtca |
512 |
Q |
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| T |
34431523 |
attataatgttatcgtgattttgtca |
34431548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 34431057 - 34431167
Alignment:
| Q |
21 |
acatcatcaccaaacactcgtcctcacttcccgggacaccaactctcattcacatgcatgaactttacattatatggccaaatacagacattcagttcag |
120 |
Q |
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| T |
34431057 |
acatcatcaccaaacactcgtcctcacttcccgggacaccaactctcattcacatgcatgaactttatattatatggccaaatacagacattcagttcag |
34431156 |
T |
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| Q |
121 |
taatctcttgt |
131 |
Q |
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| T |
34431157 |
taatctcttgt |
34431167 |
T |
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