View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_high_10 (Length: 428)
Name: NF13270_high_10
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 6697401 - 6697817
Alignment:
| Q |
1 |
acaaggaaaaataattagtatgttattatattataaaatgcatatataaaattggataaacttttcctaaaacaactaatatcttatatcatggggatgc |
100 |
Q |
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| T |
6697401 |
acaaggaaaaataattagtattttattatattataaaatgcatatataaaattggataaacttttcctaaaacgacttgtatcttatatcatggggatgc |
6697500 |
T |
|
| Q |
101 |
attgggtataactttgcaannnnnnnnattaatattcaaatgttaaaattatctactatagattattactatagtttgcaaataatttaaaatgatcttt |
200 |
Q |
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| T |
6697501 |
attgggtataactttgcaattttttttattaatattcaaatgttaaaattatctactatagattattactatagtttgcaaataatttaaaatgatcttt |
6697600 |
T |
|
| Q |
201 |
ataatcttctaaaatgctacgtaccaaattttgtttgataacttatatctacaaccatcttata--ctctaattatatgacgattttaatgatgtccaac |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
6697601 |
ataatcttctaaaatgctacgtaccaaattttgtttgataacttatatctacaaccatcttatactctctaattatatgacgattttaatgatgttcaac |
6697700 |
T |
|
| Q |
299 |
tcaccgaacatttgttagccatttgtatgaagaggcattacaacgttcacaaaatcaccttgtgaaaattcttcaatac---atctcaatgccnnnnnnn |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6697701 |
tcaccgaacatttgttagccatttgtatgaagaggcattacaacgttcacaaaatcaccttgtgaaaattcttcaatacaatatctcaatgccaaaaaaa |
6697800 |
T |
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| Q |
396 |
catactcattgaataat |
412 |
Q |
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||||||||||||||||| |
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| T |
6697801 |
catactcattgaataat |
6697817 |
T |
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