View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_high_12 (Length: 357)
Name: NF13270_high_12
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 6697383 - 6697034
Alignment:
| Q |
1 |
ttaatgtatcatcttcaattcttacaaataacaaaataaacggtaatttatagagatacatgatgttttttatatttactaatttgtgtaccaaaaaatt |
100 |
Q |
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| T |
6697383 |
ttaatgtatcatcttcaattcttacaaataacaaaataaacgataatttatagagatacatgatgttttttatatttactaatttgtgtaccaaaaaatt |
6697284 |
T |
|
| Q |
101 |
gaactgcttatata--atacgagaccattcagtactttgtttgtgccaagagtttctactttctagttaaactatcattgtaacacaaaaatcagagtca |
198 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6697283 |
gaactgcttatatataatacgagaccattcagtactttgtttgtgccaagagtttctactttctagttaaactatcattgtaacacaaaaatcagagtca |
6697184 |
T |
|
| Q |
199 |
tgtactaggaaggtgtttatgctaatcattgttttccctttgcttgaatgtggtacgaagataacttactaagttggtgggggaaaccaacattggatcc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6697183 |
tgtactaggaaggtgtttatgctaatcattgttttccctttgcttggatgtggtacgaagataacttactaagttggtgggggaaaccaacatcggatcc |
6697084 |
T |
|
| Q |
299 |
catacacaccaaaccagttaatatgtagtactttatattatattattgga |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6697083 |
catacacaccaaaccagttaatatgtagtactttatattatatttttgga |
6697034 |
T |
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