View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13270_high_13 (Length: 345)
Name: NF13270_high_13
Description: NF13270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13270_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 30504088 - 30504411
Alignment:
| Q |
18 |
caaattggtccaagtacctacatcacaatattaacaattcaaccnnnnnnntgtaacaacattaggtttcataaatcattttttctctcttgaatatgga |
117 |
Q |
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| T |
30504088 |
caaattggtccaagtacctacatcacaatattaacaattcaaccaaaaaaatgtgacaagattaggtttcataaatcattttttctctcttgaatatgga |
30504187 |
T |
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| Q |
118 |
gaaattttactaacaaaaattgaaccctagatcgatctttcgtat-----taccctaataattagttagnnnnnnnnnnnt--gaaattgtacacttatt |
210 |
Q |
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| T |
30504188 |
gaaattttactagcaaaaattgaaccctagatcgatctttcgtatagacataccctaataattagttagaaaaaaaaagagaggaaattctacacttatt |
30504287 |
T |
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| Q |
211 |
tccttatcaaagaacaagagatgttccaggtttcaggattcaatctctacttctaaatatttctcttccaccaaaacttgtttataaaaaataaagactg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
30504288 |
tccttatcaaagaacaagagatgttccaggtttcaggattcaatctctacttctaaatatttctcttccaccaaaacttgttaataaaaaataaagattg |
30504387 |
T |
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| Q |
311 |
aattagaaactca-ttcatatttt |
333 |
Q |
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||||||| ||||| |||||||||| |
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| T |
30504388 |
aattagagactcatttcatatttt |
30504411 |
T |
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